Coexpression cluster: Cluster_128 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003735 structural constituent of ribosome 21.43% (21/98) 4.37 0.0 0.0
GO:0044391 ribosomal subunit 20.41% (20/98) 4.34 0.0 0.0
GO:0005198 structural molecule activity 21.43% (21/98) 3.84 0.0 0.0
GO:0032991 protein-containing complex 47.96% (47/98) 1.96 0.0 0.0
GO:1990904 ribonucleoprotein complex 25.51% (25/98) 3.16 0.0 0.0
GO:0002181 cytoplasmic translation 15.31% (15/98) 4.61 0.0 0.0
GO:0042788 polysomal ribosome 14.29% (14/98) 4.59 0.0 0.0
GO:0006412 translation 17.35% (17/98) 3.87 0.0 0.0
GO:0043043 peptide biosynthetic process 17.35% (17/98) 3.78 0.0 0.0
GO:0015934 large ribosomal subunit 13.27% (13/98) 4.42 0.0 0.0
GO:0009059 macromolecule biosynthetic process 24.49% (24/98) 2.64 0.0 0.0
GO:0005840 ribosome 15.31% (15/98) 3.68 0.0 0.0
GO:0043604 amide biosynthetic process 17.35% (17/98) 3.36 0.0 0.0
GO:0006518 peptide metabolic process 17.35% (17/98) 3.28 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 19.39% (19/98) 3.01 0.0 0.0
GO:0022625 cytosolic large ribosomal subunit 11.22% (11/98) 4.43 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 24.49% (24/98) 2.3 0.0 0.0
GO:0098798 mitochondrial protein-containing complex 10.2% (10/98) 4.04 0.0 0.0
GO:0022618 ribonucleoprotein complex assembly 11.22% (11/98) 3.71 0.0 0.0
GO:0043603 cellular amide metabolic process 17.35% (17/98) 2.69 0.0 0.0
GO:0065003 protein-containing complex assembly 19.39% (19/98) 2.48 0.0 0.0
GO:0043933 protein-containing complex organization 20.41% (20/98) 2.35 0.0 0.0
GO:0071826 ribonucleoprotein complex subunit organization 11.22% (11/98) 3.63 0.0 0.0
GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane 7.14% (7/98) 5.02 0.0 0.0
GO:0098554 cytoplasmic side of endoplasmic reticulum membrane 7.14% (7/98) 4.99 0.0 0.0
GO:0071840 cellular component organization or biogenesis 42.86% (42/98) 1.3 0.0 0.0
GO:0015935 small ribosomal subunit 8.16% (8/98) 4.29 0.0 1e-06
GO:0003723 RNA binding 24.49% (24/98) 1.91 0.0 1e-06
GO:0043228 non-membrane-bounded organelle 28.57% (28/98) 1.69 0.0 1e-06
GO:0043232 intracellular non-membrane-bounded organelle 28.57% (28/98) 1.69 0.0 1e-06
GO:0003729 mRNA binding 19.39% (19/98) 2.18 0.0 2e-06
GO:1901566 organonitrogen compound biosynthetic process 22.45% (22/98) 1.96 0.0 2e-06
GO:0044260 cellular macromolecule metabolic process 27.55% (27/98) 1.65 0.0 3e-06
GO:0022627 cytosolic small ribosomal subunit 7.14% (7/98) 4.32 0.0 4e-06
GO:0016043 cellular component organization 38.78% (38/98) 1.25 0.0 4e-06
GO:0098800 inner mitochondrial membrane protein complex 7.14% (7/98) 4.15 0.0 8e-06
GO:0022607 cellular component assembly 22.45% (22/98) 1.82 0.0 8e-06
GO:0098562 cytoplasmic side of membrane 7.14% (7/98) 4.12 0.0 9e-06
GO:0005730 nucleolus 16.33% (16/98) 2.23 0.0 1.3e-05
GO:0014069 postsynaptic density 7.14% (7/98) 3.99 0.0 1.4e-05
GO:0099572 postsynaptic specialization 7.14% (7/98) 3.99 0.0 1.4e-05
GO:0005685 U1 snRNP 4.08% (4/98) 6.0 0.0 2e-05
GO:0044249 cellular biosynthetic process 33.67% (33/98) 1.26 1e-06 2.9e-05
GO:1901576 organic substance biosynthetic process 34.69% (34/98) 1.22 1e-06 3.5e-05
GO:0009058 biosynthetic process 35.71% (35/98) 1.19 1e-06 3.9e-05
GO:0005683 U7 snRNP 3.06% (3/98) 6.77 2e-06 9.8e-05
GO:0090150 establishment of protein localization to membrane 7.14% (7/98) 3.53 3e-06 0.000106
GO:0019843 rRNA binding 7.14% (7/98) 3.52 3e-06 0.000109
GO:0005686 U2 snRNP 4.08% (4/98) 5.21 4e-06 0.000158
GO:0098552 side of membrane 7.14% (7/98) 3.33 7e-06 0.000241
GO:0034719 SMN-Sm protein complex 3.06% (3/98) 6.32 7e-06 0.000242
GO:0005687 U4 snRNP 3.06% (3/98) 6.14 1e-05 0.000354
GO:0034641 cellular nitrogen compound metabolic process 30.61% (30/98) 1.17 1.1e-05 0.000371
GO:0003676 nucleic acid binding 31.63% (31/98) 1.12 1.4e-05 0.000467
GO:0034709 methylosome 3.06% (3/98) 5.98 1.4e-05 0.000475
GO:0005747 mitochondrial respiratory chain complex I 4.08% (4/98) 4.76 1.5e-05 0.000476
GO:0030964 NADH dehydrogenase complex 4.08% (4/98) 4.76 1.5e-05 0.000476
GO:0045271 respiratory chain complex I 4.08% (4/98) 4.76 1.5e-05 0.000476
GO:0071007 U2-type catalytic step 2 spliceosome 4.08% (4/98) 4.73 1.6e-05 0.0005
GO:0000121 glycerol-1-phosphatase activity 2.04% (2/98) 8.05 1.9e-05 0.000564
GO:1990351 transporter complex 5.1% (5/98) 3.77 3.5e-05 0.00102
GO:0046907 intracellular transport 13.27% (13/98) 1.94 3.4e-05 0.001024
GO:0043726 5-amino-6-(5-phosphoribitylamino)uracil phosphatase activity 2.04% (2/98) 7.64 3.7e-05 0.001072
GO:0055105 ubiquitin-protein transferase inhibitor activity 3.06% (3/98) 5.47 4.3e-05 0.001159
GO:1990948 ubiquitin ligase inhibitor activity 3.06% (3/98) 5.47 4.3e-05 0.001159
GO:0005682 U5 snRNP 3.06% (3/98) 5.47 4.3e-05 0.001159
GO:0051649 establishment of localization in cell 14.29% (14/98) 1.82 4.1e-05 0.001164
GO:0051641 cellular localization 17.35% (17/98) 1.55 5.8e-05 0.001492
GO:0071005 U2-type precatalytic spliceosome 4.08% (4/98) 4.28 5.6e-05 0.001493
GO:0045202 synapse 8.16% (8/98) 2.6 5.7e-05 0.001502
GO:0072657 protein localization to membrane 7.14% (7/98) 2.79 7.5e-05 0.001916
GO:0006364 rRNA processing 7.14% (7/98) 2.75 8.7e-05 0.002199
GO:0045039 protein insertion into mitochondrial inner membrane 2.04% (2/98) 7.05 9.3e-05 0.002305
GO:0071011 precatalytic spliceosome 4.08% (4/98) 4.09 9.5e-05 0.002337
GO:0098803 respiratory chain complex 4.08% (4/98) 4.05 0.000103 0.002469
GO:0000028 ribosomal small subunit assembly 3.06% (3/98) 5.05 0.000103 0.002486
GO:0000387 spliceosomal snRNP assembly 3.06% (3/98) 5.02 0.000112 0.002631
GO:0005689 U12-type spliceosomal complex 3.06% (3/98) 4.98 0.000121 0.002815
GO:0097525 spliceosomal snRNP complex 4.08% (4/98) 3.98 0.000126 0.002892
GO:0043136 glycerol-3-phosphatase activity 2.04% (2/98) 6.83 0.00013 0.00294
GO:0098796 membrane protein complex 9.18% (9/98) 2.23 0.000132 0.002948
GO:1901798 positive regulation of signal transduction by p53 class mediator 3.06% (3/98) 4.87 0.000152 0.003365
GO:0016072 rRNA metabolic process 7.14% (7/98) 2.61 0.00016 0.003502
GO:0001872 (1->3)-beta-D-glucan binding 2.04% (2/98) 6.64 0.000173 0.003641
GO:0034715 pICln-Sm protein complex 2.04% (2/98) 6.64 0.000173 0.003641
GO:0006114 glycerol biosynthetic process 2.04% (2/98) 6.64 0.000173 0.003641
GO:0055106 ubiquitin-protein transferase regulator activity 3.06% (3/98) 4.8 0.000175 0.003658
GO:0071004 U2-type prespliceosome 3.06% (3/98) 4.77 0.000188 0.003706
GO:0071010 prespliceosome 3.06% (3/98) 4.77 0.000188 0.003706
GO:0030532 small nuclear ribonucleoprotein complex 4.08% (4/98) 3.85 0.000181 0.003736
GO:0009987 cellular process 70.41% (69/98) 0.43 0.000184 0.003755
GO:1902495 transmembrane transporter complex 4.08% (4/98) 3.83 0.000187 0.003781
GO:0120114 Sm-like protein family complex 4.08% (4/98) 3.81 0.000201 0.003916
GO:0019401 alditol biosynthetic process 2.04% (2/98) 6.47 0.000221 0.004276
GO:0051668 localization within membrane 7.14% (7/98) 2.48 0.000273 0.005214
GO:0006407 rRNA export from nucleus 2.04% (2/98) 6.32 0.000276 0.005225
GO:0000027 ribosomal large subunit assembly 3.06% (3/98) 4.52 0.000309 0.00578
GO:0046540 U4/U6 x U5 tri-snRNP complex 3.06% (3/98) 4.5 0.000327 0.006053
GO:0051029 rRNA transport 2.04% (2/98) 6.18 0.000337 0.006182
GO:0097526 spliceosomal tri-snRNP complex 3.06% (3/98) 4.47 0.000345 0.00627
GO:0043170 macromolecule metabolic process 37.76% (37/98) 0.76 0.000406 0.007085
GO:0000105 histidine biosynthetic process 2.04% (2/98) 6.05 0.000404 0.007119
GO:0006771 riboflavin metabolic process 2.04% (2/98) 6.05 0.000404 0.007119
GO:0009231 riboflavin biosynthetic process 2.04% (2/98) 6.05 0.000404 0.007119
GO:0006547 histidine metabolic process 2.04% (2/98) 5.94 0.000477 0.008085
GO:1990935 splicing factor binding 2.04% (2/98) 5.94 0.000477 0.008085
GO:0042727 flavin-containing compound biosynthetic process 2.04% (2/98) 5.94 0.000477 0.008085
GO:0071013 catalytic step 2 spliceosome 4.08% (4/98) 3.47 0.000488 0.008198
GO:0015031 protein transport 10.2% (10/98) 1.81 0.000581 0.009682
GO:0005684 U2-type spliceosomal complex 4.08% (4/98) 3.36 0.000643 0.010423
GO:0044238 primary metabolic process 47.96% (47/98) 0.59 0.000642 0.010505
GO:0097064 ncRNA export from nucleus 2.04% (2/98) 5.73 0.00064 0.010552
GO:0002182 cytoplasmic translational elongation 2.04% (2/98) 5.64 0.00073 0.011721
GO:0070727 cellular macromolecule localization 13.27% (13/98) 1.48 0.000749 0.011928
GO:0000395 mRNA 5'-splice site recognition 2.04% (2/98) 5.55 0.000826 0.012919
GO:0051204 protein insertion into mitochondrial membrane 2.04% (2/98) 5.55 0.000826 0.012919
GO:1902494 catalytic complex 13.27% (13/98) 1.45 0.000929 0.014285
GO:0045184 establishment of protein localization 10.2% (10/98) 1.72 0.00094 0.014338
GO:1990204 oxidoreductase complex 4.08% (4/98) 3.22 0.000928 0.014389
GO:0140318 protein transporter activity 3.06% (3/98) 3.96 0.000977 0.01478
GO:0061951 establishment of protein localization to plasma membrane 3.06% (3/98) 3.94 0.001014 0.015216
GO:1904799 regulation of neuron remodeling 2.04% (2/98) 5.39 0.001035 0.015269
GO:1904801 positive regulation of neuron remodeling 2.04% (2/98) 5.39 0.001035 0.015269
GO:0061024 membrane organization 7.14% (7/98) 2.15 0.001077 0.015634
GO:0005774 vacuolar membrane 13.27% (13/98) 1.42 0.001076 0.015747
GO:0071705 nitrogen compound transport 13.27% (13/98) 1.42 0.001096 0.015791
GO:0006886 intracellular protein transport 8.16% (8/98) 1.95 0.001137 0.016247
GO:0090151 establishment of protein localization to mitochondrial membrane 2.04% (2/98) 5.32 0.001148 0.016276
GO:0007007 inner mitochondrial membrane organization 2.04% (2/98) 5.25 0.001267 0.017821
GO:0050657 nucleic acid transport 4.08% (4/98) 3.09 0.001291 0.017882
GO:0050658 RNA transport 4.08% (4/98) 3.09 0.001291 0.017882
GO:0051236 establishment of RNA localization 4.08% (4/98) 3.09 0.001316 0.018098
GO:0005762 mitochondrial large ribosomal subunit 2.04% (2/98) 5.18 0.001391 0.018982
GO:0030054 cell junction 19.39% (19/98) 1.06 0.001525 0.02066
GO:0014042 positive regulation of neuron maturation 2.04% (2/98) 5.05 0.001657 0.022108
GO:0050308 sugar-phosphatase activity 2.04% (2/98) 5.05 0.001657 0.022108
GO:0043229 intracellular organelle 55.1% (54/98) 0.46 0.001685 0.022157
GO:0034470 ncRNA processing 8.16% (8/98) 1.86 0.001682 0.022282
GO:0005575 cellular_component 75.51% (74/98) 0.31 0.001768 0.023083
GO:0000418 RNA polymerase IV complex 2.04% (2/98) 5.0 0.001798 0.02314
GO:0003968 RNA-directed 5'-3' RNA polymerase activity 2.04% (2/98) 5.0 0.001798 0.02314
GO:0043226 organelle 55.1% (54/98) 0.46 0.001956 0.025006
GO:0033036 macromolecule localization 13.27% (13/98) 1.32 0.001999 0.02537
GO:0006405 RNA export from nucleus 3.06% (3/98) 3.6 0.002014 0.025379
GO:0071702 organic substance transport 14.29% (14/98) 1.26 0.002028 0.02538
GO:0014041 regulation of neuron maturation 2.04% (2/98) 4.88 0.002096 0.025537
GO:0051444 negative regulation of ubiquitin-protein transferase activity 2.04% (2/98) 4.88 0.002096 0.025537
GO:1904667 negative regulation of ubiquitin protein ligase activity 2.04% (2/98) 4.88 0.002096 0.025537
GO:0016236 macroautophagy 3.06% (3/98) 3.58 0.002072 0.025759
GO:0008266 poly(U) RNA binding 3.06% (3/98) 3.57 0.002132 0.025793
GO:0000315 organellar large ribosomal subunit 2.04% (2/98) 4.83 0.002254 0.026565
GO:0018230 peptidyl-L-cysteine S-palmitoylation 2.04% (2/98) 4.83 0.002254 0.026565
GO:0018231 peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine 2.04% (2/98) 4.83 0.002254 0.026565
GO:0042726 flavin-containing compound metabolic process 2.04% (2/98) 4.83 0.002254 0.026565
GO:1901796 regulation of signal transduction by p53 class mediator 3.06% (3/98) 3.52 0.002317 0.027128
GO:0008187 poly-pyrimidine tract binding 3.06% (3/98) 3.51 0.002381 0.02752
GO:0030490 maturation of SSU-rRNA 3.06% (3/98) 3.51 0.002381 0.02752
GO:0008150 biological_process 75.51% (74/98) 0.3 0.002427 0.027876
GO:0008564 protein-exporting ATPase activity 1.02% (1/98) 8.64 0.002507 0.02809
GO:0044860 protein localization to plasma membrane raft 1.02% (1/98) 8.64 0.002507 0.02809
GO:0044861 protein transport into plasma membrane raft 1.02% (1/98) 8.64 0.002507 0.02809
GO:0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity 1.02% (1/98) 8.64 0.002507 0.02809
GO:1990778 protein localization to cell periphery 4.08% (4/98) 2.83 0.00253 0.028175
GO:0006914 autophagy 4.08% (4/98) 2.81 0.002654 0.02937
GO:0044237 cellular metabolic process 47.96% (47/98) 0.5 0.002737 0.03011
GO:1903431 positive regulation of cell maturation 2.04% (2/98) 4.69 0.002759 0.030169
GO:0008152 metabolic process 54.08% (53/98) 0.44 0.002782 0.030238
GO:0061919 process utilizing autophagic mechanism 4.08% (4/98) 2.78 0.002825 0.030518
GO:0005665 RNA polymerase II, core complex 2.04% (2/98) 4.64 0.002938 0.031557
GO:0043001 Golgi to plasma membrane protein transport 2.04% (2/98) 4.55 0.003313 0.035367
GO:0036464 cytoplasmic ribonucleoprotein granule 5.1% (5/98) 2.32 0.003378 0.035858
GO:0070180 large ribosomal subunit rRNA binding 2.04% (2/98) 4.51 0.003508 0.036589
GO:0006071 glycerol metabolic process 2.04% (2/98) 4.51 0.003508 0.036589
GO:0010970 transport along microtubule 3.06% (3/98) 3.32 0.003471 0.036629
GO:0035770 ribonucleoprotein granule 5.1% (5/98) 2.3 0.003599 0.037328
GO:1903429 regulation of cell maturation 2.04% (2/98) 4.47 0.003708 0.037809
GO:0018345 protein palmitoylation 2.04% (2/98) 4.47 0.003708 0.037809
GO:0006076 (1->3)-beta-D-glucan catabolic process 2.04% (2/98) 4.47 0.003708 0.037809
GO:0000419 RNA polymerase V complex 2.04% (2/98) 4.43 0.003914 0.039682
GO:0019400 alditol metabolic process 2.04% (2/98) 4.39 0.004124 0.041586
GO:0099080 supramolecular complex 8.16% (8/98) 1.64 0.004343 0.043312
GO:0042273 ribosomal large subunit biogenesis 2.04% (2/98) 4.35 0.00434 0.043521
GO:0099024 plasma membrane invagination 2.04% (2/98) 4.32 0.004561 0.045237
GO:0099111 microtubule-based transport 3.06% (3/98) 3.17 0.004628 0.045651
GO:0032981 mitochondrial respiratory chain complex I assembly 2.04% (2/98) 4.25 0.005018 0.046235
GO:0031522 cell envelope Sec protein transport complex 1.02% (1/98) 7.64 0.005008 0.046376
GO:0043952 protein transport by the Sec complex 1.02% (1/98) 7.64 0.005008 0.046376
GO:1900006 positive regulation of dendrite development 1.02% (1/98) 7.64 0.005008 0.046376
GO:1901588 dendritic microtubule 1.02% (1/98) 7.64 0.005008 0.046376
GO:0102043 isopentenyl phosphate kinase activity 1.02% (1/98) 7.64 0.005008 0.046376
GO:0071433 cell wall repair 1.02% (1/98) 7.64 0.005008 0.046376
GO:0002227 innate immune response in mucosa 1.02% (1/98) 7.64 0.005008 0.046376
GO:0019731 antibacterial humoral response 1.02% (1/98) 7.64 0.005008 0.046376
GO:0042719 mitochondrial intermembrane space protein transporter complex 1.02% (1/98) 7.64 0.005008 0.046376
GO:0004635 phosphoribosyl-AMP cyclohydrolase activity 1.02% (1/98) 7.64 0.005008 0.046376
GO:0004636 phosphoribosyl-ATP diphosphatase activity 1.02% (1/98) 7.64 0.005008 0.046376
GO:0018198 peptidyl-cysteine modification 2.04% (2/98) 4.21 0.005255 0.048167
GO:0019538 protein metabolic process 23.47% (23/98) 0.8 0.004924 0.048311
GO:0034660 ncRNA metabolic process 8.16% (8/98) 1.58 0.005353 0.048819
GO:0045444 fat cell differentiation 2.04% (2/98) 4.18 0.005496 0.049875
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_151 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_162 0.028 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_167 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_179 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_181 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_209 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_222 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_261 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_37 0.027 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_58 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (98) (download table)

InterPro Domains

GO Terms

Family Terms