SOLTUB.AGRIA.G00000003507

Description : Small nuclear ribonucleoprotein-associated protein

Gene families : OG_02_0018293 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000003507
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_255

Type	GO Term	Name	Evidence	Source
BP	GO:0000387	spliceosomal snRNP assembly	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	None	Extended
CC	GO:0005682	U5 snRNP	IEA	AHRD
CC	GO:0005683	U7 snRNP	IEA	AHRD
CC	GO:0005684	U2-type spliceosomal complex	None	Extended
CC	GO:0005685	U1 snRNP	IEA	AHRD
CC	GO:0005686	U2 snRNP	IEA	AHRD
CC	GO:0005687	U4 snRNP	IEA	AHRD
CC	GO:0005689	U12-type spliceosomal complex	IEA	AHRD
CC	GO:0005697	telomerase holoenzyme complex	IEA	AHRD
CC	GO:0005737	cytoplasm	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006479	protein methylation	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007276	gamete generation	None	Extended
BP	GO:0007281	germ cell development	IEA	AHRD
BP	GO:0007283	spermatogenesis	IEA	AHRD
BP	GO:0007420	brain development	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0008406	gonad development	IEA	AHRD
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
CC	GO:0015030	Cajal body	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0016604	nuclear body	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
CC	GO:0030532	small nuclear ribonucleoprotein complex	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034708	methyltransferase complex	None	Extended
CC	GO:0034709	methylosome	IEA	AHRD
CC	GO:0034719	SMN-Sm protein complex	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043021	ribonucleoprotein complex binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
CC	GO:0045495	pole plasm	IEA	AHRD
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEA	AHRD
BP	GO:0048232	male gamete generation	None	Extended
BP	GO:0048468	cell development	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
MF	GO:0070034	telomerase RNA binding	IEA	AHRD
MF	GO:0070990	snRNP binding	None	Extended
CC	GO:0071004	U2-type prespliceosome	IEA	AHRD
CC	GO:0071005	U2-type precatalytic spliceosome	IEA	AHRD
CC	GO:0071007	U2-type catalytic step 2 spliceosome	IEA	AHRD
CC	GO:0071010	prespliceosome	None	Extended
CC	GO:0071011	precatalytic spliceosome	None	Extended
CC	GO:0071013	catalytic step 2 spliceosome	None	Extended
CC	GO:0071204	histone pre-mRNA 3'end processing complex	IEA	AHRD
MF	GO:0071208	histone pre-mRNA DCP binding	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0097525	spliceosomal snRNP complex	None	Extended
CC	GO:0097526	spliceosomal tri-snRNP complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120114	Sm-like protein family complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended
MF	GO:1990446	U1 snRNP binding	IEA	AHRD
MF	GO:1990447	U2 snRNP binding	IEA	AHRD
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000109	nucleotide-excision repair complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000315	organellar large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0000408	EKC/KEOPS complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000715	nucleotide-excision repair, DNA damage recognition	IEP	Predict GO terms from Neighborhoods
CC	GO:0000791	euchromatin	IEP	Predict GO terms from Neighborhoods
MF	GO:0000976	transcription cis-regulatory region binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001067	transcription regulatory region nucleic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0002252	immune effector process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002949	tRNA threonylcarbamoyladenosine modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003690	double-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005762	mitochondrial large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006355	regulation of DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006366	transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0006376	mRNA splice site selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006446	regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006509	membrane protein ectodomain proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	IEP	Predict GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006521	regulation of cellular amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009756	carbohydrate mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009880	embryonic pattern specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009889	regulation of biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010030	positive regulation of seed germination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010104	regulation of ethylene-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010105	negative regulation of ethylene-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010182	sugar mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0015935	small ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0016592	mediator complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0016607	nuclear speck	IEP	Predict GO terms from Neighborhoods
BP	GO:0019222	regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0030139	endocytic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0030435	sporulation resulting in formation of a cellular spore	IEP	Predict GO terms from Neighborhoods
BP	GO:0031099	regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031593	polyubiquitin modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032182	ubiquitin-like protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032543	mitochondrial translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033119	negative regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0033238	regulation of cellular amine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033619	membrane protein proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0034097	response to cytokine	IEP	Predict GO terms from Neighborhoods
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043130	ubiquitin binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043230	extracellular organelle	IEP	Predict GO terms from Neighborhoods
MF	GO:0043565	sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043603	cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043604	amide biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0044391	ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0044530	supraspliceosomal complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045948	positive regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048025	negative regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048568	embryonic organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050686	negative regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0061574	ASAP complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0061711	N(6)-L-threonylcarbamoyladenine synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0062211	root regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:0065001	specification of axis polarity	IEP	Predict GO terms from Neighborhoods
CC	GO:0065010	extracellular membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0070062	extracellular exosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0070297	regulation of phosphorelay signal transduction system	IEP	Predict GO terms from Neighborhoods
BP	GO:0070298	negative regulation of phosphorelay signal transduction system	IEP	Predict GO terms from Neighborhoods
BP	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070555	response to interleukin-1	IEP	Predict GO terms from Neighborhoods
MF	GO:0070628	proteasome binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071345	cellular response to cytokine stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071347	cellular response to interleukin-1	IEP	Predict GO terms from Neighborhoods
BP	GO:0071629	cytoplasm protein quality control by the ubiquitin-proteasome system	IEP	Predict GO terms from Neighborhoods
CC	GO:0071942	XPC complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0080090	regulation of primary metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090357	regulation of tryptophan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090708	specification of plant organ axis polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0098760	response to interleukin-7	IEP	Predict GO terms from Neighborhoods
BP	GO:0098761	cellular response to interleukin-7	IEP	Predict GO terms from Neighborhoods
MF	GO:0140030	modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0140455	cytoplasm protein quality control	IEP	Predict GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903312	negative regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
CC	GO:1903561	extracellular vesicle	IEP	Predict GO terms from Neighborhoods
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001163	LSM_dom_euk/arc	9	81
IPR010920	LSM_dom_sf	4	88

External Links

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SOLTUB.AGRIA.G00000003507

Expression Profile

Co-expression Networks

Functional Annotation