SOLTUB.AGRIA.G00000035910

Description : DNA-directed RNA polymerase subunit beta

Gene families : OG_02_0001459 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000035910
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_165

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
CC	GO:0000781	chromosome, telomeric region	IEA	AHRD
CC	GO:0000785	chromatin	IEA	AHRD
MF	GO:0001056	RNA polymerase III activity	IEA	AHRD
BP	GO:0001817	regulation of cytokine production	None	Extended
BP	GO:0001819	positive regulation of cytokine production	None	Extended
MF	GO:0001882	nucleoside binding	None	Extended
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002684	positive regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
BP	GO:0002833	positive regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005665	RNA polymerase II, core complex	IEA	AHRD
CC	GO:0005666	RNA polymerase III complex	IEA	AHRD
CC	GO:0005736	RNA polymerase I complex	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	None	Extended
BP	GO:0006353	DNA-templated transcription termination	None	Extended
BP	GO:0006360	transcription by RNA polymerase I	IEA	AHRD
BP	GO:0006366	transcription by RNA polymerase II	IEA	AHRD
BP	GO:0006383	transcription by RNA polymerase III	None	Extended
BP	GO:0006386	termination of RNA polymerase III transcription	IEA	AHRD
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009304	tRNA transcription	None	Extended
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009561	megagametogenesis	IEA	AHRD
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031349	positive regulation of defense response	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032103	positive regulation of response to external stimulus	None	Extended
BP	GO:0032479	regulation of type I interferon production	None	Extended
BP	GO:0032481	positive regulation of type I interferon production	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
MF	GO:0032549	ribonucleoside binding	IEA	AHRD
BP	GO:0032648	regulation of interferon-beta production	None	Extended
BP	GO:0032728	positive regulation of interferon-beta production	IEA	AHRD
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0035196	miRNA processing	IEA	AHRD
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042797	tRNA transcription by RNA polymerase III	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045089	positive regulation of innate immune response	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050778	positive regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070918	small regulatory ncRNA processing	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
CC	GO:0098687	chromosomal region	None	Extended
BP	GO:0098781	ncRNA transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000014	single-stranded DNA endodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000019	regulation of mitotic recombination	IEP	Predict GO terms from Neighborhoods
MF	GO:0000049	tRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000054	ribosomal subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0000055	ribosomal large subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0000075	cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
CC	GO:0000178	exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000244	spliceosomal tri-snRNP complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	Predict GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predict GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0000380	alternative mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0000387	spliceosomal snRNP assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000389	mRNA 3'-splice site recognition	IEP	Predict GO terms from Neighborhoods
BP	GO:0000395	mRNA 5'-splice site recognition	IEP	Predict GO terms from Neighborhoods
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000464	endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000469	cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000472	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000480	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000722	telomere maintenance via recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0000966	RNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000967	rRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000972	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	IEP	Predict GO terms from Neighborhoods
BP	GO:0000973	post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery	IEP	Predict GO terms from Neighborhoods
CC	GO:0000974	Prp19 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001555	oocyte growth	IEP	Predict GO terms from Neighborhoods
CC	GO:0001669	acrosomal vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0001674	female germ cell nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0002097	tRNA wobble base modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0002101	tRNA wobble cytosine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0002127	tRNA wobble base cytosine methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0002199	zona pellucida receptor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0002200	somatic diversification of immune receptors	IEP	Predict GO terms from Neighborhoods
BP	GO:0002244	hematopoietic progenitor cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002718	regulation of cytokine production involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002720	positive regulation of cytokine production involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002730	regulation of dendritic cell cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002732	positive regulation of dendritic cell cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002733	regulation of myeloid dendritic cell cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002735	positive regulation of myeloid dendritic cell cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002886	regulation of myeloid leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002888	positive regulation of myeloid leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002931	response to ischemia	IEP	Predict GO terms from Neighborhoods
BP	GO:0002946	tRNA C5-cytosine methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0003008	system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0003009	skeletal muscle contraction	IEP	Predict GO terms from Neighborhoods
MF	GO:0003691	double-stranded telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004822	isoleucine-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004860	protein kinase inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004930	G protein-coupled receptor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005198	structural molecule activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005622	intracellular anatomical structure	IEP	Predict GO terms from Neighborhoods
CC	GO:0005654	nucleoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005682	U5 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005684	U2-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005697	telomerase holoenzyme complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005832	chaperonin-containing T-complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006278	RNA-templated DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006312	mitotic recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006378	mRNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006379	mRNA cleavage	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006405	RNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006406	mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006417	regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006428	isoleucyl-tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006606	protein import into nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006941	striated muscle contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0007004	telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
BP	GO:0007275	multicellular organism development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007295	growth of a germarium-derived egg chamber	IEP	Predict GO terms from Neighborhoods
BP	GO:0007339	binding of sperm to zona pellucida	IEP	Predict GO terms from Neighborhoods
BP	GO:0007534	gene conversion at mating-type locus	IEP	Predict GO terms from Neighborhoods
BP	GO:0007611	learning or memory	IEP	Predict GO terms from Neighborhoods
BP	GO:0007613	memory	IEP	Predict GO terms from Neighborhoods
BP	GO:0007614	short-term memory	IEP	Predict GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008174	mRNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0009303	rRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0009533	chloroplast stromal thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009790	embryo development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009794	regulation of mitotic cell cycle, embryonic	IEP	Predict GO terms from Neighborhoods
BP	GO:0009988	cell-cell recognition	IEP	Predict GO terms from Neighborhoods
BP	GO:0010206	photosystem II repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0010520	regulation of reciprocal meiotic recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010639	negative regulation of organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010824	regulation of centrosome duplication	IEP	Predict GO terms from Neighborhoods
BP	GO:0010833	telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:0010948	negative regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0014009	glial cell proliferation	IEP	Predict GO terms from Neighborhoods
CC	GO:0015030	Cajal body	IEP	Predict GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016234	inclusion body	IEP	Predict GO terms from Neighborhoods
MF	GO:0016427	tRNA (cytosine) methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016428	tRNA (cytosine-5-)-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016445	somatic diversification of immunoglobulins	IEP	Predict GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016556	mRNA modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0016604	nuclear body	IEP	Predict GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predict GO terms from Neighborhoods
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
MF	GO:0017056	structural constituent of nuclear pore	IEP	Predict GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0017070	U6 snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0017101	aminoacyl-tRNA synthetase multienzyme complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019210	kinase inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0022404	molting cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022405	hair cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0022616	DNA strand elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0030091	protein repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0030488	tRNA methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030619	U1 snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030620	U2 snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030623	U5 snRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0030686	90S preribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0030687	preribosome, large subunit precursor	IEP	Predict GO terms from Neighborhoods
CC	GO:0030870	Mre11 complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031080	nuclear pore outer ring	IEP	Predict GO terms from Neighborhoods
BP	GO:0031123	RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031124	mRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031573	mitotic intra-S DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0031860	telomeric 3' overhang formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031952	regulation of protein autophosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031954	positive regulation of protein autophosphorylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0031981	nuclear lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032204	regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032205	negative regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032206	positive regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032210	regulation of telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
BP	GO:0032211	negative regulation of telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
BP	GO:0032212	positive regulation of telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032880	regulation of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033044	regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033313	meiotic cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0033365	protein localization to organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0033391	chromatoid body	IEP	Predict GO terms from Neighborhoods
BP	GO:0033750	ribosome localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0034098	VCP-NPL4-UFD1 AAA ATPase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034214	protein hexamerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0034357	photosynthetic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034463	90S preribosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0034471	ncRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034504	protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
MF	GO:0034511	U3 snoRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0034512	box C/D RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034599	cellular response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0034614	cellular response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
BP	GO:0034698	response to gonadotropin	IEP	Predict GO terms from Neighborhoods
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0035036	sperm-egg recognition	IEP	Predict GO terms from Neighborhoods
MF	GO:0035198	miRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035822	gene conversion	IEP	Predict GO terms from Neighborhoods
BP	GO:0035914	skeletal muscle cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0036228	protein localization to nuclear inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0036260	RNA capping	IEP	Predict GO terms from Neighborhoods
BP	GO:0036415	regulation of tRNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0036416	tRNA stabilization	IEP	Predict GO terms from Neighborhoods
MF	GO:0042134	rRNA primary transcript binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042138	meiotic DNA double-strand break formation	IEP	Predict GO terms from Neighborhoods
CC	GO:0042170	plastid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0042273	ribosomal large subunit biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042542	response to hydrogen peroxide	IEP	Predict GO terms from Neighborhoods
CC	GO:0042651	thylakoid membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043024	ribosomal small subunit binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043073	germ cell nucleus	IEP	Predict GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0043330	response to exogenous dsRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0043331	response to dsRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0043631	RNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0044611	nuclear pore inner ring	IEP	Predict GO terms from Neighborhoods
BP	GO:0044752	response to human chorionic gonadotropin	IEP	Predict GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0045027	DNA end binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0045037	protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0045120	pronucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0045694	regulation of embryo sac egg cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045727	positive regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045977	positive regulation of mitotic cell cycle, embryonic	IEP	Predict GO terms from Neighborhoods
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0046596	regulation of viral entry into host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0046597	negative regulation of viral entry into host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0046605	regulation of centrosome cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0048254	snoRNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0048525	negative regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048820	hair follicle maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050657	nucleic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050658	RNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050890	cognition	IEP	Predict GO terms from Neighborhoods
BP	GO:0051028	mRNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051054	positive regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Predict GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051170	import into nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051236	establishment of RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051347	positive regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051391	tRNA acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051593	response to folic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
MF	GO:0051880	G-quadruplex DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051972	regulation of telomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051973	positive regulation of telomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0052372	modulation by symbiont of entry into host	IEP	Predict GO terms from Neighborhoods
CC	GO:0055035	plastid thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0060322	head development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060341	regulation of cellular localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0061081	positive regulation of myeloid leukocyte cytokine production involved in immune response	IEP	Predict GO terms from Neighborhoods
CC	GO:0061927	TOC-TIC supercomplex I	IEP	Predict GO terms from Neighborhoods
MF	GO:0062152	mRNA (cytidine-5-)-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0062176	R-loop disassembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0070122	obsolete isopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070182	DNA polymerase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070202	regulation of establishment of protein localization to chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0070203	regulation of establishment of protein localization to telomere	IEP	Predict GO terms from Neighborhoods
BP	GO:0070301	cellular response to hydrogen peroxide	IEP	Predict GO terms from Neighborhoods
MF	GO:0070530	K63-linked polyubiquitin modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0071005	U2-type precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071006	U2-type catalytic step 1 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071007	U2-type catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071011	precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071012	catalytic step 1 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0071025	RNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071027	nuclear RNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071028	nuclear mRNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071356	cellular response to tumor necrosis factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0071426	obsolete ribonucleoprotein complex export from nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0071601	sphere organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0071712	ER-associated misfolded protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0072594	establishment of protein localization to organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0080009	mRNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090435	protein localization to nuclear envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	Predict GO terms from Neighborhoods
BP	GO:0097065	anterior head development	IEP	Predict GO terms from Neighborhoods
MF	GO:0097157	pre-mRNA intronic binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0097322	7SK snRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0098787	mRNA cleavage involved in mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0098789	pre-mRNA cleavage required for polyadenylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0106162	mRNA N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0110025	DNA strand resection involved in replication fork processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0120290	stalled replication fork localization to nuclear periphery	IEP	Predict GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900180	regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902370	regulation of tRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902371	negative regulation of tRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903046	meiotic cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903326	regulation of tRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903327	negative regulation of tRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903829	positive regulation of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1903901	negative regulation of viral life cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1904353	regulation of telomere capping	IEP	Predict GO terms from Neighborhoods
BP	GO:1904354	negative regulation of telomere capping	IEP	Predict GO terms from Neighborhoods
BP	GO:1904356	regulation of telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:1904357	negative regulation of telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:1904358	positive regulation of telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:1904749	regulation of protein localization to nucleolus	IEP	Predict GO terms from Neighborhoods
BP	GO:1904812	rRNA acetylation involved in maturation of SSU-rRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:1904814	regulation of protein localization to chromosome, telomeric region	IEP	Predict GO terms from Neighborhoods
BP	GO:1904816	positive regulation of protein localization to chromosome, telomeric region	IEP	Predict GO terms from Neighborhoods
BP	GO:1904851	positive regulation of establishment of protein localization to telomere	IEP	Predict GO terms from Neighborhoods
CC	GO:1905354	exoribonuclease complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1905634	regulation of protein localization to chromatin	IEP	Predict GO terms from Neighborhoods
MF	GO:1990275	preribosome binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1990416	cellular response to brain-derived neurotrophic factor stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:1990882	rRNA acetylation	IEP	Predict GO terms from Neighborhoods
MF	GO:1990883	rRNA cytidine N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1990884	RNA acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1990898	meiotic DNA double-strand break clipping	IEP	Predict GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1990918	double-strand break repair involved in meiotic recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000278	regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000279	negative regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000573	positive regulation of DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000765	regulation of cytoplasmic translation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000767	positive regulation of cytoplasmic translation	IEP	Predict GO terms from Neighborhoods
BP	GO:2001251	negative regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:2001252	positive regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007645	RNA_pol_Rpb2_3	450	514
IPR007644	RNA_pol_bsu_protrusion	45	407
IPR007120	DNA-dir_RNAP_su2_dom	680	1057
IPR007641	RNA_pol_Rpb2_7	1059	1149
IPR007647	RNA_pol_Rpb2_5	633	668
IPR007646	RNA_pol_Rpb2_4	552	610
IPR007642	RNA_pol_Rpb2_2	196	374

External Links

No external refs found!

SOLTUB.AGRIA.G00000035910

Expression Profile

Co-expression Networks

Functional Annotation