SOLTUB.AGRIA.G00000036926


Description : Polynucleotidyl transferase, ribonuclease H-like superfamily protein


Gene families : OG_02_0006967 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000036926
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_62


Type GO Term Name Evidence Source
MF GO:0000217 DNA secondary structure binding IEA AHRD
BP GO:0000723 telomere maintenance IEA AHRD
CC GO:0000781 chromosome, telomeric region IEA AHRD
MF GO:0003678 DNA helicase activity IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005657 replication fork IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
CC GO:0005856 cytoskeleton IEA AHRD
BP GO:0006302 double-strand break repair IEA AHRD
BP GO:0006310 DNA recombination IEA AHRD
MF GO:0008296 3'-5'-exodeoxyribonuclease activity IEA AHRD
BP GO:0009314 response to radiation IEA AHRD
BP GO:0010259 multicellular organism aging IEA AHRD
BP GO:0010604 positive regulation of macromolecule metabolic process IEA AHRD
CC GO:0016020 membrane IEA AHRD
BP GO:0031325 positive regulation of cellular metabolic process IEA AHRD
BP GO:0032508 DNA duplex unwinding IEA AHRD
BP GO:0040009 regulation of growth rate IEA AHRD
BP GO:0044806 G-quadruplex DNA unwinding IEA AHRD
MF GO:0044877 protein-containing complex binding IEA AHRD
BP GO:0045005 DNA-templated DNA replication maintenance of fidelity IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
BP GO:0051052 regulation of DNA metabolic process IEA AHRD
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEA AHRD
MF GO:0051880 G-quadruplex DNA binding IEA AHRD
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEA AHRD
BP GO:0090399 replicative senescence IEA AHRD
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEA AHRD
Type GO Term Name Evidence Source
MF GO:0003861 3-isopropylmalate dehydratase activity IEP Predict GO terms from Neighborhoods
MF GO:0004121 cystathionine beta-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0004123 cystathionine gamma-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0005313 L-glutamate transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0005385 zinc ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0005784 Sec61 translocon complex IEP Predict GO terms from Neighborhoods
BP GO:0006520 cellular amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006534 cysteine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006555 methionine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation IEP Predict GO terms from Neighborhoods
BP GO:0006766 vitamin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006775 fat-soluble vitamin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006824 cobalt ion transport IEP Predict GO terms from Neighborhoods
BP GO:0006828 manganese ion transport IEP Predict GO terms from Neighborhoods
BP GO:0006829 zinc ion transport IEP Predict GO terms from Neighborhoods
BP GO:0006877 cellular cobalt ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0007368 determination of left/right symmetry IEP Predict GO terms from Neighborhoods
BP GO:0007605 sensory perception of sound IEP Predict GO terms from Neighborhoods
MF GO:0008320 protein transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0008614 pyridoxine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0008615 pyridoxine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0008652 cellular amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009086 methionine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009092 homoserine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009110 vitamin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009739 response to gibberellin IEP Predict GO terms from Neighborhoods
BP GO:0010029 regulation of seed germination IEP Predict GO terms from Neighborhoods
BP GO:0010155 regulation of proton transport IEP Predict GO terms from Neighborhoods
MF GO:0015172 acidic amino acid transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015174 basic amino acid transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015189 L-lysine transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015450 protein-transporting ATPase activity IEP Predict GO terms from Neighborhoods
BP GO:0015802 basic amino acid transport IEP Predict GO terms from Neighborhoods
MF GO:0016151 nickel cation binding IEP Predict GO terms from Neighborhoods
MF GO:0016289 CoA hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predict GO terms from Neighborhoods
MF GO:0016829 lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016832 aldehyde-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016840 carbon-nitrogen lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016843 amine-lyase activity IEP Predict GO terms from Neighborhoods
BP GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine IEP Predict GO terms from Neighborhoods
BP GO:0019343 cysteine biosynthetic process via cystathionine IEP Predict GO terms from Neighborhoods
BP GO:0019344 cysteine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019346 transsulfuration IEP Predict GO terms from Neighborhoods
MF GO:0019838 growth factor binding IEP Predict GO terms from Neighborhoods
MF GO:0022884 macromolecule transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0030970 retrograde protein transport, ER to cytosol IEP Predict GO terms from Neighborhoods
BP GO:0031204 post-translational protein targeting to membrane, translocation IEP Predict GO terms from Neighborhoods
CC GO:0031205 endoplasmic reticulum Sec complex IEP Predict GO terms from Neighborhoods
BP GO:0032119 sequestering of zinc ion IEP Predict GO terms from Neighborhoods
CC GO:0032420 stereocilium IEP Predict GO terms from Neighborhoods
BP GO:0032527 protein exit from endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0034214 protein hexamerization IEP Predict GO terms from Neighborhoods
BP GO:0035315 hair cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:0036381 pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity IEP Predict GO terms from Neighborhoods
BP GO:0042023 DNA endoreduplication IEP Predict GO terms from Neighborhoods
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042371 vitamin K biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042372 phylloquinone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042373 vitamin K metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042374 phylloquinone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042490 mechanoreceptor differentiation IEP Predict GO terms from Neighborhoods
BP GO:0042491 inner ear auditory receptor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0042753 positive regulation of circadian rhythm IEP Predict GO terms from Neighborhoods
BP GO:0042816 vitamin B6 metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042819 vitamin B6 biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042822 pyridoxal phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044283 small molecule biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0044322 endoplasmic reticulum quality control compartment IEP Predict GO terms from Neighborhoods
BP GO:0045048 protein insertion into ER membrane IEP Predict GO terms from Neighborhoods
BP GO:0046967 cytosol to endoplasmic reticulum transport IEP Predict GO terms from Neighborhoods
MF GO:0048408 epidermal growth factor binding IEP Predict GO terms from Neighborhoods
BP GO:0048563 post-embryonic animal organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050667 homocysteine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0050954 sensory perception of mechanical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0051205 protein insertion into membrane IEP Predict GO terms from Neighborhoods
BP GO:0051238 sequestering of metal ion IEP Predict GO terms from Neighborhoods
BP GO:0051259 protein complex oligomerization IEP Predict GO terms from Neighborhoods
MF GO:0051377 mannose-ethanolamine phosphotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0055068 cobalt ion homeostasis IEP Predict GO terms from Neighborhoods
CC GO:0060091 kinocilium IEP Predict GO terms from Neighborhoods
BP GO:0060113 inner ear receptor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0060118 vestibular receptor cell development IEP Predict GO terms from Neighborhoods
BP GO:0060119 inner ear receptor cell development IEP Predict GO terms from Neighborhoods
BP GO:0060122 inner ear receptor cell stereocilium organization IEP Predict GO terms from Neighborhoods
MF GO:0061522 1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity IEP Predict GO terms from Neighborhoods
BP GO:0061687 detoxification of inorganic compound IEP Predict GO terms from Neighborhoods
CC GO:0062039 biofilm matrix IEP Predict GO terms from Neighborhoods
CC GO:0062040 fungal biofilm matrix IEP Predict GO terms from Neighborhoods
BP GO:0062111 zinc ion import into organelle IEP Predict GO terms from Neighborhoods
CC GO:0071256 translocon complex IEP Predict GO terms from Neighborhoods
BP GO:0071265 L-methionine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0071266 'de novo' L-methionine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0071577 zinc ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0071585 detoxification of cadmium ion IEP Predict GO terms from Neighborhoods
BP GO:0071816 tail-anchored membrane protein insertion into ER membrane IEP Predict GO terms from Neighborhoods
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0080144 amino acid homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0089718 amino acid import across plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0090090 negative regulation of canonical Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0097421 liver regeneration IEP Predict GO terms from Neighborhoods
CC GO:0097730 non-motile cilium IEP Predict GO terms from Neighborhoods
CC GO:0097732 9+2 non-motile cilium IEP Predict GO terms from Neighborhoods
BP GO:0098849 cellular detoxification of cadmium ion IEP Predict GO terms from Neighborhoods
CC GO:0098858 actin-based cell projection IEP Predict GO terms from Neighborhoods
MF GO:0106099 2-keto-3-deoxy-L-rhamnonate aldolase activity IEP Predict GO terms from Neighborhoods
BP GO:0140209 zinc ion import into endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0140820 cytosol to Golgi apparatus transport IEP Predict GO terms from Neighborhoods
BP GO:1900140 regulation of seedling development IEP Predict GO terms from Neighborhoods
BP GO:1901661 quinone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901663 quinone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902022 L-lysine transport IEP Predict GO terms from Neighborhoods
BP GO:1903401 L-lysine transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1903513 endoplasmic reticulum to cytosol transport IEP Predict GO terms from Neighborhoods
BP GO:1904257 zinc ion import into Golgi lumen IEP Predict GO terms from Neighborhoods
BP GO:1990822 basic amino acid transmembrane transport IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR012337 RNaseH-like_sf 39 209
IPR002562 3'-5'_exonuclease_dom 57 208
No external refs found!