SOLTUB.AGRIA.G00000003870

Description : Pentatricopeptide repeat-containing protein, putative

Gene families : OG_02_0012316 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000003870
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_176

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005851	eukaryotic translation initiation factor 2B complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006862	nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007275	multicellular organism development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007417	central nervous system development	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009100	glycoprotein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009101	glycoprotein biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009793	embryo development ending in seed dormancy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010073	meristem maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010422	regulation of brassinosteroid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010449	root meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010467	gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010893	positive regulation of steroid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015748	organophosphate ester transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015865	purine nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015868	purine ribonucleotide transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019218	regulation of steroid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022008	neurogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0030173	integral component of Golgi membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030176	integral component of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031228	intrinsic component of Golgi membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032352	positive regulation of hormone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035266	meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045824	negative regulation of innate immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0045940	positive regulation of steroid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046886	positive regulation of hormone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046963	3'-phosphoadenosine 5'-phosphosulfate transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0046964	3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048444	floral organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048446	petal morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048468	cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048869	cellular developmental process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050789	regulation of biological process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050810	regulation of steroid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051503	adenine nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072348	sulfur compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072530	purine-containing compound transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0080147	root hair cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090030	regulation of steroid hormone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901679	nucleotide transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902446	regulation of shade avoidance	IEP	Predict GO terms from Neighborhoods
BP	GO:1902448	positive regulation of shade avoidance	IEP	Predict GO terms from Neighborhoods
BP	GO:1902559	3'-phospho-5'-adenylyl sulfate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:2000488	positive regulation of brassinosteroid biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	448	476
IPR002885	Pentatricopeptide_repeat	344	372
IPR002885	Pentatricopeptide_repeat	307	340
IPR002885	Pentatricopeptide_repeat	412	445
IPR002885	Pentatricopeptide_repeat	344	376
IPR002885	Pentatricopeptide_repeat	273	305
IPR002885	Pentatricopeptide_repeat	168	197
IPR002885	Pentatricopeptide_repeat	377	411
IPR002885	Pentatricopeptide_repeat	269	316
IPR002885	Pentatricopeptide_repeat	374	422

External Links

No external refs found!

SOLTUB.AGRIA.G00000003870

Expression Profile

Co-expression Networks

Functional Annotation