SOLTUB.AGRIA.G00000038842

Description : elongation factor family protein

Gene families : OG_02_0023427 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000038842
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_62

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	IEA	AHRD
BP	GO:0010468	regulation of gene expression	IEA	AHRD
MF	GO:0016787	hydrolase activity	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0030154	cell differentiation	IEA	AHRD
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0030587	sorocarp development	IEA	AHRD
CC	GO:0031012	extracellular matrix	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	IEA	AHRD
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043229	intracellular organelle	IEA	AHRD
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	IEA	AHRD
MF	GO:0044877	protein-containing complex binding	IEA	AHRD
BP	GO:0048731	system development	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
CC	GO:0062039	biofilm matrix	None	Extended
CC	GO:0062040	fungal biofilm matrix	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099120	socially cooperative development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	IEA	AHRD
BP	GO:1901700	response to oxygen-containing compound	IEA	AHRD
CC	GO:1990904	ribonucleoprotein complex	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
CC	GO:0000329	fungal-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0001403	invasive growth in response to glucose limitation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002679	respiratory burst involved in defense response	IEP	Predict GO terms from Neighborhoods
MF	GO:0003861	3-isopropylmalate dehydratase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004529	exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005313	L-glutamate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005385	zinc ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005887	integral component of plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006775	fat-soluble vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006824	cobalt ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006828	manganese ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006829	zinc ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006875	cellular metal ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006877	cellular cobalt ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006878	cellular copper ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007035	vacuolar acidification	IEP	Predict GO terms from Neighborhoods
BP	GO:0007042	lysosomal lumen acidification	IEP	Predict GO terms from Neighborhoods
BP	GO:0007124	pseudohyphal growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0007605	sensory perception of sound	IEP	Predict GO terms from Neighborhoods
MF	GO:0008296	3'-5'-exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009739	response to gibberellin	IEP	Predict GO terms from Neighborhoods
MF	GO:0009975	cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010155	regulation of proton transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010259	multicellular organism aging	IEP	Predict GO terms from Neighborhoods
MF	GO:0015172	acidic amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015174	basic amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015189	L-lysine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015802	basic amino acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016151	nickel cation binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0016289	CoA hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016829	lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016895	exodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
BP	GO:0031589	cell-substrate adhesion	IEP	Predict GO terms from Neighborhoods
CC	GO:0032009	early phagosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0032119	sequestering of zinc ion	IEP	Predict GO terms from Neighborhoods
CC	GO:0032420	stereocilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0033299	secretion of lysosomal enzymes	IEP	Predict GO terms from Neighborhoods
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034214	protein hexamerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0035315	hair cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035751	regulation of lysosomal lumen pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0036267	invasive filamentous growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0040009	regulation of growth rate	IEP	Predict GO terms from Neighborhoods
BP	GO:0042362	fat-soluble vitamin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042371	vitamin K biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042372	phylloquinone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042373	vitamin K metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042374	phylloquinone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042490	mechanoreceptor differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042491	inner ear auditory receptor cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042592	homeostatic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042753	positive regulation of circadian rhythm	IEP	Predict GO terms from Neighborhoods
BP	GO:0044182	filamentous growth of a population of unicellular organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0044806	G-quadruplex DNA unwinding	IEP	Predict GO terms from Neighborhoods
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0046967	cytosol to endoplasmic reticulum transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0048563	post-embryonic animal organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048878	chemical homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050954	sensory perception of mechanical stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051238	sequestering of metal ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051259	protein complex oligomerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0051377	mannose-ethanolamine phosphotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051865	protein autoubiquitination	IEP	Predict GO terms from Neighborhoods
MF	GO:0051880	G-quadruplex DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0055065	metal ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055068	cobalt ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055070	copper ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055076	transition metal ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055080	cation homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0060091	kinocilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0060113	inner ear receptor cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060118	vestibular receptor cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060119	inner ear receptor cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060122	inner ear receptor cell stereocilium organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0061462	protein localization to lysosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0061522	1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061687	detoxification of inorganic compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0062111	zinc ion import into organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070070	proton-transporting V-type ATPase complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070783	growth of unicellular organism as a thread of attached cells	IEP	Predict GO terms from Neighborhoods
BP	GO:0070861	regulation of protein exit from endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0070863	positive regulation of protein exit from endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0071577	zinc ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071585	detoxification of cadmium ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0090399	replicative senescence	IEP	Predict GO terms from Neighborhoods
BP	GO:0097421	liver regeneration	IEP	Predict GO terms from Neighborhoods
CC	GO:0097730	non-motile cilium	IEP	Predict GO terms from Neighborhoods
CC	GO:0097732	9+2 non-motile cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0098771	inorganic ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0098849	cellular detoxification of cadmium ion	IEP	Predict GO terms from Neighborhoods
CC	GO:0098852	lytic vacuole membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098858	actin-based cell projection	IEP	Predict GO terms from Neighborhoods
MF	GO:0106099	2-keto-3-deoxy-L-rhamnonate aldolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140209	zinc ion import into endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0140820	cytosol to Golgi apparatus transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901661	quinone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901663	quinone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902022	L-lysine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903401	L-lysine transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904257	zinc ion import into Golgi lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:1990822	basic amino acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:2000008	regulation of protein localization to cell surface	IEP	Predict GO terms from Neighborhoods
BP	GO:2000010	positive regulation of protein localization to cell surface	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR035647	EFG_III/V	884	981
IPR000795	T_Tr_GTP-bd_dom	8	350
IPR000640	EFG_V-like	881	966
IPR020568	Ribosomal_S5_D2-typ_fold	604	883
IPR027417	P-loop_NTPase	7	350
IPR041095	EFG_II	530	595
IPR035647	EFG_III/V	527	602
IPR009000	Transl_B-barrel_sf	395	524
IPR004161	EFTu-like_2	434	512

External Links

No external refs found!

SOLTUB.AGRIA.G00000038842

Expression Profile

Co-expression Networks

Functional Annotation