SOLTUB.AGRIA.G00000039084


Description : RNA exonuclease 4


Gene families : OG_02_0005183 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000039084
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_37


Type GO Term Name Evidence Source
BP GO:0000027 ribosomal large subunit assembly IEA AHRD
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA AHRD
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA AHRD
BP GO:0000737 DNA catabolic process, endonucleolytic IEA AHRD
BP GO:0000738 DNA catabolic process, exonucleolytic IEA AHRD
MF GO:0003690 double-stranded DNA binding IEA AHRD
MF GO:0003697 single-stranded DNA binding IEA AHRD
MF GO:0004519 endonuclease activity IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
BP GO:0006281 DNA repair IEA AHRD
BP GO:0006355 regulation of DNA-templated transcription IEA AHRD
MF GO:0008408 3'-5' exonuclease activity IEA AHRD
BP GO:0010212 response to ionizing radiation IEA AHRD
CC GO:0016607 nuclear speck IEA AHRD
CC GO:0031965 nuclear membrane IEA AHRD
BP GO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000307 cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
CC GO:0000315 organellar large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0000380 alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000460 maturation of 5.8S rRNA IEP Predict GO terms from Neighborhoods
BP GO:0000470 maturation of LSU-rRNA IEP Predict GO terms from Neighborhoods
MF GO:0001221 transcription coregulator binding IEP Predict GO terms from Neighborhoods
MF GO:0001223 transcription coactivator binding IEP Predict GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Predict GO terms from Neighborhoods
CC GO:0002945 cyclin K-CDK13 complex IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003724 RNA helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0003880 protein C-terminal carboxyl O-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004177 aminopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0004831 tyrosine-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0004857 enzyme inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0004864 protein phosphatase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0005244 voltage-gated ion channel activity IEP Predict GO terms from Neighborhoods
MF GO:0005253 anion channel activity IEP Predict GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Predict GO terms from Neighborhoods
CC GO:0005762 mitochondrial large ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0005930 axoneme IEP Predict GO terms from Neighborhoods
BP GO:0006352 DNA-templated transcription initiation IEP Predict GO terms from Neighborhoods
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predict GO terms from Neighborhoods
BP GO:0006437 tyrosyl-tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0006481 C-terminal protein methylation IEP Predict GO terms from Neighborhoods
BP GO:0006954 inflammatory response IEP Predict GO terms from Neighborhoods
BP GO:0007088 regulation of mitotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0007346 regulation of mitotic cell cycle IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
CC GO:0008024 cyclin/CDK positive transcription elongation factor complex IEP Predict GO terms from Neighborhoods
BP GO:0008033 tRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0008168 methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008175 tRNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008235 metalloexopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008238 exopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008308 voltage-gated anion channel activity IEP Predict GO terms from Neighborhoods
MF GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0008625 extrinsic apoptotic signaling pathway via death domain receptors IEP Predict GO terms from Neighborhoods
BP GO:0009060 aerobic respiration IEP Predict GO terms from Neighborhoods
BP GO:0009451 RNA modification IEP Predict GO terms from Neighborhoods
MF GO:0010340 carboxyl-O-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0010564 regulation of cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0010611 regulation of cardiac muscle hypertrophy IEP Predict GO terms from Neighborhoods
BP GO:0010613 positive regulation of cardiac muscle hypertrophy IEP Predict GO terms from Neighborhoods
BP GO:0010824 regulation of centrosome duplication IEP Predict GO terms from Neighborhoods
BP GO:0010826 negative regulation of centrosome duplication IEP Predict GO terms from Neighborhoods
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Predict GO terms from Neighborhoods
BP GO:0014742 positive regulation of muscle hypertrophy IEP Predict GO terms from Neighborhoods
BP GO:0014743 regulation of muscle hypertrophy IEP Predict GO terms from Neighborhoods
BP GO:0016485 protein processing IEP Predict GO terms from Neighborhoods
CC GO:0016592 mediator complex IEP Predict GO terms from Neighborhoods
MF GO:0016597 amino acid binding IEP Predict GO terms from Neighborhoods
CC GO:0016605 PML body IEP Predict GO terms from Neighborhoods
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predict GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predict GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0018206 peptidyl-methionine modification IEP Predict GO terms from Neighborhoods
BP GO:0018410 C-terminal protein amino acid modification IEP Predict GO terms from Neighborhoods
MF GO:0019208 phosphatase regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0019212 phosphatase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0019888 protein phosphatase regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
MF GO:0022832 voltage-gated channel activity IEP Predict GO terms from Neighborhoods
MF GO:0022836 gated channel activity IEP Predict GO terms from Neighborhoods
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Predict GO terms from Neighborhoods
BP GO:0030097 hemopoiesis IEP Predict GO terms from Neighborhoods
MF GO:0030234 enzyme regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0030332 cyclin binding IEP Predict GO terms from Neighborhoods
BP GO:0030488 tRNA methylation IEP Predict GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0030599 pectinesterase activity IEP Predict GO terms from Neighborhoods
CC GO:0030687 preribosome, large subunit precursor IEP Predict GO terms from Neighborhoods
BP GO:0031297 replication fork processing IEP Predict GO terms from Neighborhoods
CC GO:0031306 intrinsic component of mitochondrial outer membrane IEP Predict GO terms from Neighborhoods
CC GO:0031307 integral component of mitochondrial outer membrane IEP Predict GO terms from Neighborhoods
BP GO:0031333 negative regulation of protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0031365 N-terminal protein amino acid modification IEP Predict GO terms from Neighborhoods
BP GO:0031398 positive regulation of protein ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0031440 regulation of mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031441 negative regulation of mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0032259 methylation IEP Predict GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Predict GO terms from Neighborhoods
CC GO:0032592 integral component of mitochondrial membrane IEP Predict GO terms from Neighborhoods
BP GO:0032784 regulation of DNA-templated transcription elongation IEP Predict GO terms from Neighborhoods
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Predict GO terms from Neighborhoods
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP Predict GO terms from Neighborhoods
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Predict GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Predict GO terms from Neighborhoods
BP GO:0033045 regulation of sister chromatid segregation IEP Predict GO terms from Neighborhoods
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Predict GO terms from Neighborhoods
BP GO:0033129 obsolete positive regulation of histone phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0033182 regulation of histone ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0033184 positive regulation of histone ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0034121 regulation of toll-like receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0035551 protein initiator methionine removal involved in protein maturation IEP Predict GO terms from Neighborhoods
BP GO:0042246 tissue regeneration IEP Predict GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Predict GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0043414 macromolecule methylation IEP Predict GO terms from Neighborhoods
BP GO:0043502 regulation of muscle adaptation IEP Predict GO terms from Neighborhoods
BP GO:0043687 post-translational protein modification IEP Predict GO terms from Neighborhoods
BP GO:0044087 regulation of cellular component biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0045005 DNA-templated DNA replication maintenance of fidelity IEP Predict GO terms from Neighborhoods
BP GO:0045840 positive regulation of mitotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0045842 positive regulation of mitotic metaphase/anaphase transition IEP Predict GO terms from Neighborhoods
BP GO:0046599 regulation of centriole replication IEP Predict GO terms from Neighborhoods
BP GO:0046600 negative regulation of centriole replication IEP Predict GO terms from Neighborhoods
BP GO:0046605 regulation of centrosome cycle IEP Predict GO terms from Neighborhoods
BP GO:0046606 negative regulation of centrosome cycle IEP Predict GO terms from Neighborhoods
BP GO:0046620 regulation of organ growth IEP Predict GO terms from Neighborhoods
MF GO:0046910 pectinesterase inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:0048440 carpel development IEP Predict GO terms from Neighborhoods
BP GO:0050686 negative regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050792 regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0051129 negative regulation of cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0051147 regulation of muscle cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0051494 negative regulation of cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051783 regulation of nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0051785 positive regulation of nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0051983 regulation of chromosome segregation IEP Predict GO terms from Neighborhoods
MF GO:0051998 protein carboxyl O-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0055021 regulation of cardiac muscle tissue growth IEP Predict GO terms from Neighborhoods
BP GO:0060043 regulation of cardiac muscle cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0060420 regulation of heart growth IEP Predict GO terms from Neighborhoods
BP GO:0061026 cardiac muscle tissue regeneration IEP Predict GO terms from Neighborhoods
BP GO:0062207 regulation of pattern recognition receptor signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0070006 metalloaminopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0070084 protein initiator methionine removal IEP Predict GO terms from Neighborhoods
CC GO:0070691 P-TEFb complex IEP Predict GO terms from Neighborhoods
BP GO:0070816 phosphorylation of RNA polymerase II C-terminal domain IEP Predict GO terms from Neighborhoods
MF GO:0072545 tyrosine binding IEP Predict GO terms from Neighborhoods
BP GO:0090231 regulation of spindle checkpoint IEP Predict GO terms from Neighborhoods
BP GO:0090257 regulation of muscle system process IEP Predict GO terms from Neighborhoods
BP GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint IEP Predict GO terms from Neighborhoods
BP GO:0090594 inflammatory response to wounding IEP Predict GO terms from Neighborhoods
BP GO:0097191 extrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0097322 7SK snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0097472 cyclin-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0098573 intrinsic component of mitochondrial membrane IEP Predict GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Predict GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predict GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Predict GO terms from Neighborhoods
BP GO:1900363 regulation of mRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:1900364 negative regulation of mRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:1900458 negative regulation of brassinosteroid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1901970 positive regulation of mitotic sister chromatid separation IEP Predict GO terms from Neighborhoods
BP GO:1901976 regulation of cell cycle checkpoint IEP Predict GO terms from Neighborhoods
BP GO:1901987 regulation of cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902101 positive regulation of metaphase/anaphase transition of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902116 negative regulation of organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1902415 regulation of mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:1902416 positive regulation of mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903504 regulation of mitotic spindle checkpoint IEP Predict GO terms from Neighborhoods
BP GO:1903837 regulation of mRNA 3'-UTR binding IEP Predict GO terms from Neighborhoods
BP GO:1903839 positive regulation of mRNA 3'-UTR binding IEP Predict GO terms from Neighborhoods
CC GO:1904813 ficolin-1-rich granule lumen IEP Predict GO terms from Neighborhoods
BP GO:1905214 regulation of RNA binding IEP Predict GO terms from Neighborhoods
BP GO:1905216 positive regulation of RNA binding IEP Predict GO terms from Neighborhoods
BP GO:1905818 regulation of chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905820 positive regulation of chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:2000736 regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2000737 negative regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2001166 regulation of histone H2B ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:2001168 positive regulation of histone H2B ubiquitination IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR012337 RNaseH-like_sf 78 235
IPR013520 Exonuclease_RNaseT/DNA_pol3 80 227
No external refs found!