SOLTUB.AGRIA.G00000039307

Description : Eukaryotic peptide chain release factor subunit 1-1

Gene families : OG_02_0000589 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000039307
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_262

Type	GO Term	Name	Evidence	Source
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEA	AHRD
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
BP	GO:0002184	cytoplasmic translational termination	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	None	Extended
MF	GO:0003747	translation release factor activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006415	translational termination	None	Extended
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006449	regulation of translational termination	IEA	AHRD
BP	GO:0006479	protein methylation	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008079	translation termination factor activity	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016149	translation release factor activity, codon specific	IEA	AHRD
CC	GO:0018444	translation release factor complex	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032984	protein-containing complex disassembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040008	regulation of growth	IEA	AHRD
MF	GO:0043021	ribonucleoprotein complex binding	None	Extended
MF	GO:0043022	ribosome binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043244	regulation of protein-containing complex disassembly	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
MF	GO:1990825	sequence-specific mRNA binding	IEA	AHRD
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000910	cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0000911	cytokinesis by cell plate formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0001671	ATPase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002376	immune system process	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004620	phospholipase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004630	phospholipase D activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005096	GTPase activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006458	'de novo' protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006643	membrane lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006892	post-Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006896	Golgi to vacuole transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006897	endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006898	receptor-mediated endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006986	response to unfolded protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0007005	mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007281	germ cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007292	female gamete generation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007611	learning or memory	IEP	Predict GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008289	lipid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009395	phospholipid catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009504	cell plate	IEP	Predict GO terms from Neighborhoods
CC	GO:0009524	phragmoplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0009789	positive regulation of abscisic acid-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009790	embryo development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009873	ethylene-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010036	response to boron-containing substance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010044	response to aluminum ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010243	response to organonitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0010358	leaf shaping	IEP	Predict GO terms from Neighborhoods
BP	GO:0010498	proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016298	lipase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0022626	cytosolic ribosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0030100	regulation of endocytosis	IEP	Predict GO terms from Neighborhoods
CC	GO:0030135	coated vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030136	clathrin-coated vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030139	endocytic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0030163	protein catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0030276	clathrin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030433	ubiquitin-dependent ERAD pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0030544	Hsp70 protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030695	GTPase regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0031072	heat shock protein binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031410	cytoplasmic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0032878	regulation of establishment or maintenance of cell polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034638	phosphatidylcholine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0035091	phosphatidylinositol binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035966	response to topologically incorrect protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0035967	cellular response to topologically incorrect protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0036503	ERAD pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0045334	clathrin-coated endocytic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0046434	organophosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046466	membrane lipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046470	phosphatidylcholine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046475	glycerophospholipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046503	glycerolipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048285	organelle fission	IEP	Predict GO terms from Neighborhoods
BP	GO:0048488	synaptic vesicle endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048532	anatomical structure arrangement	IEP	Predict GO terms from Neighborhoods
BP	GO:0048766	root hair initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050890	cognition	IEP	Predict GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051084	'de novo' post-translational protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051085	chaperone cofactor-dependent protein refolding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051087	chaperone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051788	response to misfolded protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0060429	epithelium development	IEP	Predict GO terms from Neighborhoods
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061077	chaperone-mediated protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0061640	cytoskeleton-dependent cytokinesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0070290	N-acylphosphatidylethanolamine-specific phospholipase D activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071218	cellular response to misfolded protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0072583	clathrin-dependent endocytosis	IEP	Predict GO terms from Neighborhoods
CC	GO:0097708	intracellular vesicle	IEP	Predict GO terms from Neighborhoods
MF	GO:0098772	molecular function regulator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0098794	postsynapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0099003	vesicle-mediated transport in synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0140238	presynaptic endocytosis	IEP	Predict GO terms from Neighborhoods
MF	GO:0140677	molecular function activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901698	response to nitrogen compound	IEP	Predict GO terms from Neighborhoods
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	Predict GO terms from Neighborhoods
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000114	regulation of establishment of cell polarity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR024049	eRF1_1_sf	6	140
IPR005140	eRF1_1_Pelota	17	138
IPR029064	L30e-like	278	420
IPR005141	eRF1_2	144	277
IPR004403	Peptide_chain-rel_eRF1/aRF1	12	417
IPR005142	eRF1_3	281	418

External Links

No external refs found!

SOLTUB.AGRIA.G00000039307

Expression Profile

Co-expression Networks

Functional Annotation