Description : VPS35 endosomal protein-sorting factor-like
Gene families : OG_02_0017633 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000040118 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_269 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005737 | cytoplasm | IEA | AHRD |
| CC | GO:0012505 | endomembrane system | IEA | AHRD |
| CC | GO:0016020 | membrane | IEA | AHRD |
| BP | GO:0016192 | vesicle-mediated transport | IEA | AHRD |
| BP | GO:0051641 | cellular localization | IEA | AHRD |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000182 | rDNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000350 | generation of catalytic spliceosome for second transesterification step | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000386 | second spliceosomal transesterification activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000390 | spliceosomal complex disassembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000819 | sister chromatid segregation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000959 | mitochondrial RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000993 | RNA polymerase II complex binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001098 | basal transcription machinery binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001099 | basal RNA polymerase II transcription machinery binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001825 | blastocyst formation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003725 | double-stranded RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003995 | acyl-CoA dehydrogenase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005048 | signal sequence binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005933 | cellular bud | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006354 | DNA-templated transcription elongation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006356 | regulation of transcription by RNA polymerase I | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006378 | mRNA polyadenylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006397 | mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006405 | RNA export from nucleus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006406 | mRNA export from nucleus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006413 | translational initiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006606 | protein import into nucleus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006635 | fatty acid beta-oxidation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007032 | endosome organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007530 | sex determination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007632 | visual behavior | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007634 | optokinetic behavior | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0008023 | transcription elongation factor complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008139 | nuclear localization sequence binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008143 | poly(A) binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008333 | endosome to lysosome transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009062 | fatty acid catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010171 | body morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010172 | embryonic body morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0015721 | bile acid and bile salt transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016073 | snRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016074 | sno(s)RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016077 | sno(s)RNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016078 | tRNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016180 | snRNA processing | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016604 | nuclear body | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016926 | protein desumoylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016973 | poly(A)+ mRNA export from nucleus | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0017099 | very-long-chain-acyl-CoA dehydrogenase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018992 | germ-line sex determination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019395 | fatty acid oxidation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022406 | membrane docking | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030422 | siRNA processing | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030897 | HOPS complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031126 | sno(s)RNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031401 | positive regulation of protein modification process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032479 | regulation of type I interferon production | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032481 | positive regulation of type I interferon production | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032988 | ribonucleoprotein complex disassembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033182 | regulation of histone ubiquitination | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0033263 | CORVET complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033539 | fatty acid beta-oxidation using acyl-CoA dehydrogenase | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034470 | ncRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034472 | snRNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034661 | ncRNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035196 | miRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0040021 | hermaphrodite germ-line sex determination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0040022 | feminization of hermaphroditic germ-line | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043144 | sno(s)RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043175 | RNA polymerase core enzyme binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043485 | endosome to pigment granule transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043628 | small regulatory ncRNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043629 | ncRNA polyadenylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043630 | ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043631 | RNA polyadenylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043633 | polyadenylation-dependent RNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043634 | polyadenylation-dependent ncRNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045176 | apical protein localization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045943 | positive regulation of transcription by RNA polymerase I | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046907 | intracellular transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048066 | developmental pigmentation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048069 | eye pigmentation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048278 | vesicle docking | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0050779 | RNA destabilization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051092 | positive regulation of NF-kappaB transcription factor activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051147 | regulation of muscle cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051148 | negative regulation of muscle cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051169 | nuclear transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051247 | positive regulation of protein metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051276 | chromosome organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051569 | regulation of histone H3-K4 methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051649 | establishment of localization in cell | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0052890 | oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060036 | notochord cell vacuolation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060194 | regulation of antisense RNA transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060195 | negative regulation of antisense RNA transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060211 | regulation of nuclear-transcribed mRNA poly(A) tail shortening | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060212 | negative regulation of nuclear-transcribed mRNA poly(A) tail shortening | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0061157 | mRNA destabilization | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0061608 | nuclear import signal receptor activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0061702 | inflammasome complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070063 | RNA polymerase binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070137 | ubiquitin-like protein-specific endopeptidase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070139 | SUMO-specific endopeptidase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070566 | adenylyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070568 | guanylyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070717 | poly-purine tract binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070878 | primary miRNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070883 | pre-miRNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070991 | medium-chain-acyl-CoA dehydrogenase activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071005 | U2-type precatalytic spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071007 | U2-type catalytic step 2 spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071011 | precatalytic spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071014 | post-mRNA release spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071020 | post-spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071021 | U2-type post-spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071025 | RNA surveillance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071027 | nuclear RNA surveillance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071029 | nuclear ncRNA surveillance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071046 | nuclear polyadenylation-dependent ncRNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071047 | polyadenylation-dependent mRNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071076 | RNA 3' uridylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071219 | cellular response to molecule of bacterial origin | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071222 | cellular response to lipopolysaccharide | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0072559 | NLRP3 inflammasome complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090057 | root radial pattern formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090615 | mitochondrial mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098813 | nuclear chromosome segregation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140014 | mitotic nuclear division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140029 | exocytic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140056 | organelle localization by membrane tethering | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140104 | molecular carrier activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140747 | regulation of ncRNA transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900151 | regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900152 | negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900225 | regulation of NLRP3 inflammasome complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900227 | positive regulation of NLRP3 inflammasome complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902373 | negative regulation of mRNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904245 | regulation of polynucleotide adenylyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904247 | positive regulation of polynucleotide adenylyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1905868 | regulation of 3'-UTR-mediated mRNA stabilization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1905870 | positive regulation of 3'-UTR-mediated mRNA stabilization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2001166 | regulation of histone H2B ubiquitination | IEP | Predict GO terms from Neighborhoods |
No InterPro domains available for this sequence
| No external refs found! |