SOLTUB.AGRIA.G00000040135

Description : RING/FYVE/PHD zinc finger superfamily protein

Gene families : OG_02_0021450 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000040135
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_36

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003712	transcription coregulator activity	None	Extended
MF	GO:0003713	transcription coactivator activity	IEA	AHRD
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005654	nucleoplasm	IEA	AHRD
BP	GO:0006325	chromatin organization	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007338	single fertilization	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	AHRD
MF	GO:0008170	N-methyltransferase activity	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
MF	GO:0008276	protein methyltransferase activity	None	Extended
BP	GO:0008284	positive regulation of cell population proliferation	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009566	fertilization	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	IEA	AHRD
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016278	lysine N-methyltransferase activity	None	Extended
MF	GO:0016279	protein-lysine N-methyltransferase activity	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	IEA	AHRD
MF	GO:0016740	transferase activity	IEA	AHRD
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0016746	acyltransferase activity	IEA	AHRD
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEA	AHRD
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032259	methylation	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034708	methyltransferase complex	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
CC	GO:0035097	histone methyltransferase complex	IEA	AHRD
BP	GO:0035264	multicellular organism growth	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040007	growth	None	Extended
MF	GO:0042054	histone methyltransferase activity	IEA	AHRD
BP	GO:0042127	regulation of cell population proliferation	None	Extended
MF	GO:0042393	histone binding	IEA	AHRD
MF	GO:0042800	histone methyltransferase activity (H3-K4 specific)	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044666	MLL3/4 complex	IEA	AHRD
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEA	AHRD
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0048145	regulation of fibroblast proliferation	None	Extended
BP	GO:0048146	positive regulation of fibroblast proliferation	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051568	histone H3-K4 methylation	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061029	eyelid development in camera-type eye	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097692	histone H3-K4 monomethylation	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000109	nucleotide-excision repair complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0000182	rDNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000209	protein polyubiquitination	IEP	Predict GO terms from Neighborhoods
MF	GO:0000979	RNA polymerase II core promoter sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000993	RNA polymerase II complex binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001046	core promoter sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001173	DNA-templated transcriptional start site selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0001174	transcriptional start site selection at RNA polymerase II promoter	IEP	Predict GO terms from Neighborhoods
BP	GO:0001501	skeletal system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001654	eye development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001745	compound eye morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005658	alpha DNA polymerase:primase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005669	transcription factor TFIID complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005671	obsolete Ada2/Gcn5/Ada3 transcription activator complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005776	autophagosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006111	regulation of gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Predict GO terms from Neighborhoods
BP	GO:0006289	nucleotide-excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006378	mRNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006473	protein acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007482	haltere development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007507	heart development	IEP	Predict GO terms from Neighborhoods
MF	GO:0008143	poly(A) binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009299	mRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0010070	zygote asymmetric cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0010225	response to UV-C	IEP	Predict GO terms from Neighborhoods
BP	GO:0010676	positive regulation of cellular carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010907	positive regulation of glucose metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016251	RNA polymerase II general transcription initiation factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016567	protein ubiquitination	IEP	Predict GO terms from Neighborhoods
CC	GO:0016604	nuclear body	IEP	Predict GO terms from Neighborhoods
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
MF	GO:0017025	TBP-class protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019083	viral transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031056	regulation of histone modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0031057	negative regulation of histone modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0031061	negative regulation of histone methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031400	negative regulation of protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032446	protein modification by small protein conjugation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0034657	GID complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0035064	methylated histone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035067	negative regulation of histone acetylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0042575	DNA polymerase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0043175	RNA polymerase core enzyme binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043388	positive regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043543	protein acylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043631	RNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043981	histone H4-K5 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043982	histone H4-K8 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043984	histone H4-K16 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044093	positive regulation of molecular function	IEP	Predict GO terms from Neighborhoods
CC	GO:0044545	NSL complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0044665	MLL1/2 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0045722	positive regulation of gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045913	positive regulation of carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046966	nuclear thyroid hormone receptor binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0048188	Set1C/COMPASS complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0048577	negative regulation of short-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0048579	negative regulation of long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0048586	regulation of long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0048592	eye morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048736	appendage development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048737	imaginal disc-derived appendage development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051123	RNA polymerase II preinitiation complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051347	positive regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051571	positive regulation of histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051572	negative regulation of histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070063	RNA polymerase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Predict GO terms from Neighborhoods
BP	GO:0070897	transcription preinitiation complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0071222	cellular response to lipopolysaccharide	IEP	Predict GO terms from Neighborhoods
CC	GO:0071339	MLL1 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071396	cellular response to lipid	IEP	Predict GO terms from Neighborhoods
MF	GO:0071667	DNA/RNA hybrid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090596	sensory organ morphogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0097550	transcription preinitiation complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0140030	modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0140034	methylation-dependent protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0140223	general transcription initiation factor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1902562	H4 histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1903932	regulation of DNA primase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1903934	positive regulation of DNA primase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904245	regulation of polynucleotide adenylyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904247	positive regulation of polynucleotide adenylyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904796	regulation of core promoter binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1904798	positive regulation of core promoter binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1905037	autophagosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1990114	RNA polymerase II core complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:2000242	negative regulation of reproductive process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000677	regulation of transcription regulatory region DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000679	positive regulation of transcription regulatory region DNA binding	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011011	Znf_FYVE_PHD	373	436
IPR019787	Znf_PHD-finger	381	428

External Links

No external refs found!

SOLTUB.AGRIA.G00000040135

Expression Profile

Co-expression Networks

Functional Annotation