SOLTUB.AGRIA.G00000041039

Description : ATP-dependent Clp protease ATP-binding subunit ClpA homolog, chloroplastic

Gene families : OG_02_0003839 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download) GO:0000725

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041039
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_27

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009570	chloroplast stroma	IEA	AHRD
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031969	chloroplast membrane	IEA	AHRD
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	IEA	AHRD
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045036	protein targeting to chloroplast	None	Extended
BP	GO:0045037	protein import into chloroplast stroma	IEA	AHRD
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0065002	intracellular protein transmembrane transport	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071806	protein transmembrane transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072596	establishment of protein localization to chloroplast	None	Extended
BP	GO:0072598	protein localization to chloroplast	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0004175	endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004222	metalloendopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004564	beta-fructofuranosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004575	sucrose alpha-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004930	G protein-coupled receptor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005324	long-chain fatty acid transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005745	m-AAA complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005778	peroxisomal membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005887	integral component of plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0005987	sucrose catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006448	regulation of translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006635	fatty acid beta-oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006879	cellular iron ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006995	cellular response to nitrogen starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007005	mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007031	peroxisome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0008203	cholesterol metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008320	protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009056	catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009313	oligosaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009526	plastid envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009643	photosynthetic acclimation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009668	plastid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009767	photosynthetic electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0009822	alkaloid catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009842	cyanelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0009941	chloroplast envelope	IEP	Predict GO terms from Neighborhoods
MF	GO:0009977	proton motive force dependent protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010019	chloroplast-nucleus signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010027	thylakoid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010109	regulation of photosynthesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0010287	plastoglobule	IEP	Predict GO terms from Neighborhoods
BP	GO:0010304	PSII associated light-harvesting complex II catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010528	regulation of transposition	IEP	Predict GO terms from Neighborhoods
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015450	protein-transporting ATPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015462	ABC-type protein transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015909	long-chain fatty acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015910	long-chain fatty acid import into peroxisome	IEP	Predict GO terms from Neighborhoods
BP	GO:0015919	peroxisomal membrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015996	chlorophyll catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016021	integral component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016042	lipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0016464	chloroplast protein-transporting ATPase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016485	protein processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0016656	monodehydroascorbate reductase (NADH) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	Predict GO terms from Neighborhoods
MF	GO:0016730	oxidoreductase activity, acting on iron-sulfur proteins as donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016731	oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0017038	protein import	IEP	Predict GO terms from Neighborhoods
CC	GO:0019866	organelle inner membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0022804	active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0030488	tRNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0031224	intrinsic component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031279	regulation of cyclase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031360	intrinsic component of thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031361	integral component of thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031522	cell envelope Sec protein transport complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031903	microbody membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031930	mitochondria-nucleus signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0031942	i-AAA complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031967	organelle envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0031975	envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0032365	intracellular lipid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0032977	membrane insertase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0033015	tetrapyrrole catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0033281	TAT protein transport complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0033926	glycopeptide alpha-N-acetylgalactosaminidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034214	protein hexamerization	IEP	Predict GO terms from Neighborhoods
CC	GO:0034357	photosynthetic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034982	mitochondrial protein processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035694	mitochondrial protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0042549	photosystem II stabilization	IEP	Predict GO terms from Neighborhoods
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0042651	thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0042760	very long-chain fatty acid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043024	ribosomal small subunit binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043235	receptor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0043574	peroxisomal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043952	protein transport by the Sec complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0043953	protein transport by the Tat complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0044248	cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045038	protein import into chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0045041	protein import into mitochondrial intermembrane space	IEP	Predict GO terms from Neighborhoods
BP	GO:0045900	negative regulation of translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046149	pigment catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046352	disaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048255	mRNA stabilization	IEP	Predict GO terms from Neighborhoods
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051117	ATPase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051205	protein insertion into membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0051259	protein complex oligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051291	protein heterooligomerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0051536	iron-sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051540	metal cluster binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051604	protein maturation	IEP	Predict GO terms from Neighborhoods
CC	GO:0055035	plastid thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0055072	iron ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055076	transition metal ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0061024	membrane organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0061927	TOC-TIC supercomplex I	IEP	Predict GO terms from Neighborhoods
BP	GO:0070206	protein trimerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070208	protein heterotrimerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070894	regulation of transposon integration	IEP	Predict GO terms from Neighborhoods
BP	GO:0072657	protein localization to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0080177	plastoglobule organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0080183	response to photooxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0090150	establishment of protein localization to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0090342	obsolete regulation of cell aging	IEP	Predict GO terms from Neighborhoods
MF	GO:0090599	alpha-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0106310	protein serine kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Predict GO terms from Neighborhoods
MF	GO:0140104	molecular carrier activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140318	protein transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140359	ABC-type transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140597	protein carrier chaperone	IEP	Predict GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901031	regulation of response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
BP	GO:1901403	positive regulation of tetrapyrrole metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901465	positive regulation of tetrapyrrole biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901562	response to paraquat	IEP	Predict GO terms from Neighborhoods
BP	GO:1902001	fatty acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902171	regulation of tocopherol cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902326	positive regulation of chlorophyll biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904143	positive regulation of carotenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1990229	iron-sulfur cluster assembly complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR041546	ClpA/ClpB_AAA_lid	537	631
IPR003959	ATPase_AAA_core	729	903
IPR027417	P-loop_NTPase	354	634
IPR036628	Clp_N_dom_sf	210	320
IPR003959	ATPase_AAA_core	399	515
IPR004176	Clp_R_dom	299	340
IPR004176	Clp_R_dom	223	275
IPR027417	P-loop_NTPase	679	996
IPR019489	Clp_ATPase_C	910	990

External Links

No external refs found!

SOLTUB.AGRIA.G00000041039

Expression Profile

Co-expression Networks

Functional Annotation