SOLTUB.AGRIA.G00000041742


Description : Cyclin-D3-1-like protein


Gene families : OG_02_0007142 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041742
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_187


Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEA AHRD
BP GO:0000082 G1/S transition of mitotic cell cycle IEA AHRD
CC GO:0000307 cyclin-dependent protein kinase holoenzyme complex IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005634 nucleus IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
BP GO:0009735 response to cytokinin IEA AHRD
BP GO:0009744 response to sucrose IEA AHRD
BP GO:0010444 guard mother cell differentiation IEA AHRD
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEA AHRD
BP GO:0042023 DNA endoreduplication IEA AHRD
BP GO:0048316 seed development IEA AHRD
BP GO:1901371 regulation of leaf morphogenesis IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000027 ribosomal large subunit assembly IEP Predict GO terms from Neighborhoods
BP GO:0000041 transition metal ion transport IEP Predict GO terms from Neighborhoods
CC GO:0000228 nuclear chromosome IEP Predict GO terms from Neighborhoods
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000387 spliceosomal snRNP assembly IEP Predict GO terms from Neighborhoods
BP GO:0000395 mRNA 5'-splice site recognition IEP Predict GO terms from Neighborhoods
CC GO:0000786 nucleosome IEP Predict GO terms from Neighborhoods
BP GO:0001503 ossification IEP Predict GO terms from Neighborhoods
BP GO:0001881 receptor recycling IEP Predict GO terms from Neighborhoods
BP GO:0002790 peptide secretion IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0004623 phospholipase A2 activity IEP Predict GO terms from Neighborhoods
MF GO:0004746 riboflavin synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0005102 signaling receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0005179 hormone activity IEP Predict GO terms from Neighborhoods
MF GO:0005375 copper ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005682 U5 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005683 U7 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005685 U1 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005686 U2 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005687 U4 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005689 U12-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005700 polytene chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
CC GO:0005795 Golgi stack IEP Predict GO terms from Neighborhoods
CC GO:0005798 Golgi-associated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0005829 cytosol IEP Predict GO terms from Neighborhoods
BP GO:0006144 purine nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0006335 DNA replication-dependent chromatin assembly IEP Predict GO terms from Neighborhoods
BP GO:0006352 DNA-templated transcription initiation IEP Predict GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006376 mRNA splice site selection IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006771 riboflavin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006825 copper ion transport IEP Predict GO terms from Neighborhoods
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predict GO terms from Neighborhoods
MF GO:0008097 5S rRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008266 poly(U) RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predict GO terms from Neighborhoods
BP GO:0009112 nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009231 riboflavin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009268 response to pH IEP Predict GO terms from Neighborhoods
BP GO:0009306 protein secretion IEP Predict GO terms from Neighborhoods
BP GO:0009860 pollen tube growth IEP Predict GO terms from Neighborhoods
BP GO:0009932 cell tip growth IEP Predict GO terms from Neighborhoods
CC GO:0010369 chromocenter IEP Predict GO terms from Neighborhoods
BP GO:0010447 response to acidic pH IEP Predict GO terms from Neighborhoods
BP GO:0010469 regulation of signaling receptor activity IEP Predict GO terms from Neighborhoods
MF GO:0015662 P-type ion transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0017022 myosin binding IEP Predict GO terms from Neighborhoods
MF GO:0019003 GDP binding IEP Predict GO terms from Neighborhoods
MF GO:0019135 deoxyhypusine monooxygenase activity IEP Predict GO terms from Neighborhoods
MF GO:0019829 ATPase-coupled cation transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0021510 spinal cord development IEP Predict GO terms from Neighborhoods
BP GO:0021954 central nervous system neuron development IEP Predict GO terms from Neighborhoods
BP GO:0022008 neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0023061 signal release IEP Predict GO terms from Neighborhoods
BP GO:0030001 metal ion transport IEP Predict GO terms from Neighborhoods
BP GO:0030072 peptide hormone secretion IEP Predict GO terms from Neighborhoods
BP GO:0030073 insulin secretion IEP Predict GO terms from Neighborhoods
MF GO:0030545 signaling receptor regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0030546 signaling receptor activator activity IEP Predict GO terms from Neighborhoods
BP GO:0031397 negative regulation of protein ubiquitination IEP Predict GO terms from Neighborhoods
MF GO:0031489 myosin V binding IEP Predict GO terms from Neighborhoods
MF GO:0031491 nucleosome binding IEP Predict GO terms from Neighborhoods
MF GO:0031492 nucleosomal DNA binding IEP Predict GO terms from Neighborhoods
CC GO:0031901 early endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0032092 positive regulation of protein binding IEP Predict GO terms from Neighborhoods
CC GO:0032154 cleavage furrow IEP Predict GO terms from Neighborhoods
BP GO:0032400 melanosome localization IEP Predict GO terms from Neighborhoods
BP GO:0032401 establishment of melanosome localization IEP Predict GO terms from Neighborhoods
BP GO:0032402 melanosome transport IEP Predict GO terms from Neighborhoods
BP GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032456 endocytic recycling IEP Predict GO terms from Neighborhoods
CC GO:0032588 trans-Golgi network membrane IEP Predict GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Predict GO terms from Neighborhoods
BP GO:0033572 transferrin transport IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0034709 methylosome IEP Predict GO terms from Neighborhoods
CC GO:0034715 pICln-Sm protein complex IEP Predict GO terms from Neighborhoods
CC GO:0034719 SMN-Sm protein complex IEP Predict GO terms from Neighborhoods
CC GO:0035059 RCAF complex IEP Predict GO terms from Neighborhoods
BP GO:0035418 protein localization to synapse IEP Predict GO terms from Neighborhoods
BP GO:0035592 establishment of protein localization to extracellular region IEP Predict GO terms from Neighborhoods
CC GO:0035619 root hair tip IEP Predict GO terms from Neighborhoods
BP GO:0035773 insulin secretion involved in cellular response to glucose stimulus IEP Predict GO terms from Neighborhoods
BP GO:0042726 flavin-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0042975 peroxisome proliferator activated receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0043112 receptor metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043433 negative regulation of DNA-binding transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
CC GO:0044815 DNA packaging complex IEP Predict GO terms from Neighborhoods
BP GO:0045054 constitutive secretory pathway IEP Predict GO terms from Neighborhoods
BP GO:0045055 regulated exocytosis IEP Predict GO terms from Neighborhoods
BP GO:0045056 transcytosis IEP Predict GO terms from Neighborhoods
CC GO:0045177 apical part of cell IEP Predict GO terms from Neighborhoods
BP GO:0045637 regulation of myeloid cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045638 negative regulation of myeloid cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045652 regulation of megakaryocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045653 negative regulation of megakaryocyte differentiation IEP Predict GO terms from Neighborhoods
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predict GO terms from Neighborhoods
BP GO:0046719 regulation by virus of viral protein levels in host cell IEP Predict GO terms from Neighborhoods
BP GO:0046879 hormone secretion IEP Predict GO terms from Neighborhoods
MF GO:0046982 protein heterodimerization activity IEP Predict GO terms from Neighborhoods
MF GO:0047498 calcium-dependent phospholipase A2 activity IEP Predict GO terms from Neighborhoods
MF GO:0048018 receptor ligand activity IEP Predict GO terms from Neighborhoods
BP GO:0048219 inter-Golgi cisterna vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:0048699 generation of neurons IEP Predict GO terms from Neighborhoods
BP GO:0050920 regulation of chemotaxis IEP Predict GO terms from Neighborhoods
BP GO:0051438 regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051444 negative regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051648 vesicle localization IEP Predict GO terms from Neighborhoods
BP GO:0051650 establishment of vesicle localization IEP Predict GO terms from Neighborhoods
BP GO:0051875 pigment granule localization IEP Predict GO terms from Neighborhoods
BP GO:0051904 pigment granule transport IEP Predict GO terms from Neighborhoods
BP GO:0051905 establishment of pigment granule localization IEP Predict GO terms from Neighborhoods
CC GO:0055037 recycling endosome IEP Predict GO terms from Neighborhoods
CC GO:0055038 recycling endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0055070 copper ion homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0055105 ubiquitin-protein transferase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0055106 ubiquitin-protein transferase regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0061951 establishment of protein localization to plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0062237 protein localization to postsynapse IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0070206 protein trimerization IEP Predict GO terms from Neighborhoods
BP GO:0070207 protein homotrimerization IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071007 U2-type catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071014 post-mRNA release spliceosomal complex IEP Predict GO terms from Neighborhoods
BP GO:0071467 cellular response to pH IEP Predict GO terms from Neighborhoods
BP GO:0071468 cellular response to acidic pH IEP Predict GO terms from Neighborhoods
BP GO:0071692 protein localization to extracellular region IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0097120 receptor localization to synapse IEP Predict GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:0097242 amyloid-beta clearance IEP Predict GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0098554 cytoplasmic side of endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
CC GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
CC GO:0098563 intrinsic component of synaptic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0098837 postsynaptic recycling endosome IEP Predict GO terms from Neighborhoods
CC GO:0098845 postsynaptic endosome IEP Predict GO terms from Neighborhoods
BP GO:0098877 neurotransmitter receptor transport to plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0098887 neurotransmitter receptor transport, endosome to postsynaptic membrane IEP Predict GO terms from Neighborhoods
BP GO:0098969 neurotransmitter receptor transport to postsynaptic membrane IEP Predict GO terms from Neighborhoods
CC GO:0098993 anchored component of synaptic vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0099072 regulation of postsynaptic membrane neurotransmitter receptor levels IEP Predict GO terms from Neighborhoods
BP GO:0099637 neurotransmitter receptor transport IEP Predict GO terms from Neighborhoods
BP GO:0099638 endosome to plasma membrane protein transport IEP Predict GO terms from Neighborhoods
BP GO:0099639 neurotransmitter receptor transport, endosome to plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0120161 regulation of cold-induced thermogenesis IEP Predict GO terms from Neighborhoods
BP GO:0120163 negative regulation of cold-induced thermogenesis IEP Predict GO terms from Neighborhoods
BP GO:0140014 mitotic nuclear division IEP Predict GO terms from Neighborhoods
MF GO:0140358 P-type transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0140581 P-type monovalent copper transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0150093 amyloid-beta clearance by transcytosis IEP Predict GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:1901798 positive regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1901799 negative regulation of proteasomal protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902253 regulation of intrinsic apoptotic signaling pathway by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902255 positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902414 protein localization to cell junction IEP Predict GO terms from Neighborhoods
MF GO:1902444 riboflavin binding IEP Predict GO terms from Neighborhoods
BP GO:1902667 regulation of axon guidance IEP Predict GO terms from Neighborhoods
BP GO:1903051 negative regulation of proteolysis involved in protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP Predict GO terms from Neighborhoods
BP GO:1903539 protein localization to postsynaptic membrane IEP Predict GO terms from Neighborhoods
BP GO:1903540 establishment of protein localization to postsynaptic membrane IEP Predict GO terms from Neighborhoods
BP GO:1904666 regulation of ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:1904667 negative regulation of ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
MF GO:1990825 sequence-specific mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:1990935 splicing factor binding IEP Predict GO terms from Neighborhoods
MF GO:1990948 ubiquitin ligase inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:2000008 regulation of protein localization to cell surface IEP Predict GO terms from Neighborhoods
BP GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000434 regulation of protein neddylation IEP Predict GO terms from Neighborhoods
BP GO:2000435 negative regulation of protein neddylation IEP Predict GO terms from Neighborhoods
BP GO:2001135 regulation of endocytic recycling IEP Predict GO terms from Neighborhoods
BP GO:2001235 positive regulation of apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001244 positive regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR036915 Cyclin-like_sf 33 166
IPR036915 Cyclin-like_sf 150 263
IPR006671 Cyclin_N 61 166
IPR004367 Cyclin_C-dom 168 266
No external refs found!