SOLTUB.AGRIA.G00000042220

Description : Condensin-2 complex subunit H2

Gene families : OG_02_0017414 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000042220
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_243

Type	GO Term	Name	Evidence	Source
CC	GO:0000793	condensed chromosome	IEA	AHRD
CC	GO:0000796	condensin complex	IEA	AHRD
BP	GO:0001775	cell activation	None	Extended
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002521	leukocyte differentiation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005694	chromosome	None	Extended
CC	GO:0005730	nucleolus	IEA	AHRD
BP	GO:0006282	regulation of DNA repair	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	None	Extended
BP	GO:0007076	mitotic chromosome condensation	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010032	meiotic chromosome condensation	IEA	AHRD
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016321	female meiosis chromosome segregation	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030054	cell junction	IEA	AHRD
BP	GO:0030098	lymphocyte differentiation	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030217	T cell differentiation	None	Extended
BP	GO:0030261	chromosome condensation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033077	T cell differentiation in thymus	IEA	AHRD
BP	GO:0042110	T cell activation	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0045132	meiotic chromosome segregation	None	Extended
CC	GO:0045171	intercellular bridge	IEA	AHRD
BP	GO:0045321	leukocyte activation	None	Extended
BP	GO:0045739	positive regulation of DNA repair	IEA	AHRD
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046649	lymphocyte activation	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051054	positive regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051304	chromosome separation	None	Extended
BP	GO:0051306	mitotic sister chromatid separation	IEA	AHRD
BP	GO:0051307	meiotic chromosome separation	None	Extended
BP	GO:0051309	female meiosis chromosome separation	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1903047	mitotic cell cycle process	None	Extended
BP	GO:1903131	mononuclear cell differentiation	None	Extended
BP	GO:2001020	regulation of response to DNA damage stimulus	None	Extended
BP	GO:2001022	positive regulation of response to DNA damage stimulus	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0000217	DNA secondary structure binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000429	carbon catabolite regulation of transcription from RNA polymerase II promoter	IEP	Predict GO terms from Neighborhoods
BP	GO:0000436	carbon catabolite activation of transcription from RNA polymerase II promoter	IEP	Predict GO terms from Neighborhoods
CC	GO:0000506	glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000710	meiotic mismatch repair	IEP	Predict GO terms from Neighborhoods
CC	GO:0000803	sex chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0000930	gamma-tubulin complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0001741	XY body	IEP	Predict GO terms from Neighborhoods
BP	GO:0002200	somatic diversification of immune receptors	IEP	Predict GO terms from Neighborhoods
BP	GO:0002566	somatic diversification of immune receptors via somatic mutation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002637	regulation of immunoglobulin production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002639	positive regulation of immunoglobulin production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002696	positive regulation of leukocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002700	regulation of production of molecular mediator of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002702	positive regulation of production of molecular mediator of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002703	regulation of leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002705	positive regulation of leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002706	regulation of lymphocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002708	positive regulation of lymphocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002712	regulation of B cell mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002714	positive regulation of B cell mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002819	regulation of adaptive immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002821	positive regulation of adaptive immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002822	regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	IEP	Predict GO terms from Neighborhoods
BP	GO:0002824	positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	IEP	Predict GO terms from Neighborhoods
BP	GO:0002889	regulation of immunoglobulin mediated immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002891	positive regulation of immunoglobulin mediated immune response	IEP	Predict GO terms from Neighborhoods
MF	GO:0003680	minor groove of adenine-thymine-rich DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003725	double-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004076	biotin synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004683	calmodulin-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004697	protein kinase C activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004698	calcium-dependent protein kinase C activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005680	anaphase-promoting complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006298	mismatch repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006337	nucleosome disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0006349	regulation of gene expression by genomic imprinting	IEP	Predict GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0006497	protein lipidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006505	GPI anchor metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006768	biotin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006829	zinc ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006882	cellular zinc ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007095	mitotic G2 DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0007127	meiosis I	IEP	Predict GO terms from Neighborhoods
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007276	gamete generation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0008286	insulin receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009102	biotin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009247	glycolipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009533	chloroplast stromal thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009657	plastid organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009658	chloroplast organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009902	chloroplast relocation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009904	chloroplast accumulation movement	IEP	Predict GO terms from Neighborhoods
MF	GO:0009931	calcium-dependent protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009954	proximal/distal pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010051	xylem and phloem pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010206	photosystem II repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0010267	ta-siRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0010377	guard cell fate commitment	IEP	Predict GO terms from Neighborhoods
CC	GO:0010445	nuclear dicing body	IEP	Predict GO terms from Neighborhoods
BP	GO:0010455	positive regulation of cell fate commitment	IEP	Predict GO terms from Neighborhoods
BP	GO:0010564	regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010589	leaf proximal/distal pattern formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0010857	calcium-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010948	negative regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010972	negative regulation of G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0016445	somatic diversification of immunoglobulins	IEP	Predict GO terms from Neighborhoods
BP	GO:0016446	somatic hypermutation of immunoglobulin genes	IEP	Predict GO terms from Neighborhoods
CC	GO:0016514	SWI/SNF complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0016586	RSC-type complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016783	sulfurtransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0017176	phosphatidylinositol N-acetylglucosaminyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0022619	generative cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030091	protein repair	IEP	Predict GO terms from Neighborhoods
MF	GO:0030374	nuclear receptor coactivator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030888	regulation of B cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030890	positive regulation of B cell proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030983	mismatched DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031054	pre-miRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031145	anaphase-promoting complex-dependent catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031445	regulation of heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031494	regulation of mating type switching	IEP	Predict GO terms from Neighborhoods
BP	GO:0031496	positive regulation of mating type switching	IEP	Predict GO terms from Neighborhoods
BP	GO:0031670	cellular response to nutrient	IEP	Predict GO terms from Neighborhoods
MF	GO:0032135	DNA insertion or deletion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0032300	mismatch repair complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0032389	MutLalpha complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0032435	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032875	regulation of DNA endoreduplication	IEP	Predict GO terms from Neighborhoods
BP	GO:0032944	regulation of mononuclear cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032946	positive regulation of mononuclear cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032986	protein-DNA complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0035195	miRNA-mediated gene silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035196	miRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0035198	miRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035279	miRNA-mediated gene silencing by mRNA destabilization	IEP	Predict GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043570	maintenance of DNA repeat elements	IEP	Predict GO terms from Neighborhoods
BP	GO:0044773	mitotic DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044774	mitotic DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044818	mitotic G2/M transition checkpoint	IEP	Predict GO terms from Neighborhoods
BP	GO:0045176	apical protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045191	regulation of isotype switching	IEP	Predict GO terms from Neighborhoods
BP	GO:0045786	negative regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045830	positive regulation of isotype switching	IEP	Predict GO terms from Neighborhoods
BP	GO:0045840	positive regulation of mitotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0045842	positive regulation of mitotic metaphase/anaphase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0045911	positive regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0045930	negative regulation of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0045990	carbon catabolite regulation of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045991	carbon catabolite activation of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0048296	regulation of isotype switching to IgA isotypes	IEP	Predict GO terms from Neighborhoods
BP	GO:0048298	positive regulation of isotype switching to IgA isotypes	IEP	Predict GO terms from Neighborhoods
BP	GO:0048302	regulation of isotype switching to IgG isotypes	IEP	Predict GO terms from Neighborhoods
BP	GO:0048304	positive regulation of isotype switching to IgG isotypes	IEP	Predict GO terms from Neighborhoods
BP	GO:0048366	leaf development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050670	regulation of lymphocyte proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050671	positive regulation of lymphocyte proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050779	RNA destabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0050864	regulation of B cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050871	positive regulation of B cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051094	positive regulation of developmental process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051251	positive regulation of lymphocyte activation	IEP	Predict GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051667	establishment of plastid localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051782	negative regulation of cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051783	regulation of nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051785	positive regulation of nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0055069	zinc ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0061157	mRNA destabilization	IEP	Predict GO terms from Neighborhoods
MF	GO:0061980	regulatory RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070663	regulation of leukocyte proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0070665	positive regulation of leukocyte proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0070979	protein K11-linked ubiquitination	IEP	Predict GO terms from Neighborhoods
CC	GO:0071564	npBAF complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071565	nBAF complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0120261	regulation of heterochromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1901799	negative regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901970	positive regulation of mitotic sister chromatid separation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901991	negative regulation of mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902101	positive regulation of metaphase/anaphase transition of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1902750	negative regulation of cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902807	negative regulation of cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1903051	negative regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903866	palisade mesophyll development	IEP	Predict GO terms from Neighborhoods
BP	GO:1905820	positive regulation of chromosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000036	regulation of stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:2000059	negative regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000134	negative regulation of G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:2000243	positive regulation of reproductive process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000653	regulation of genetic imprinting	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR009378	H2_N	23	134
IPR031737	CNDH2_C	321	614
IPR031719	H2_M	160	320

External Links

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SOLTUB.AGRIA.G00000042220

Expression Profile

Co-expression Networks

Functional Annotation