SOLTUB.AGRIA.G00000042250

Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein

Gene families : OG_02_0002712 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000042250
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_229

Type	GO Term	Name	Evidence	Source
BP	GO:0001822	kidney development	None	Extended
BP	GO:0003006	developmental process involved in reproduction	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	IEA	AHRD
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	AHRD
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005543	phospholipid binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005815	microtubule organizing center	IEA	AHRD
CC	GO:0005929	cilium	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	IEA	AHRD
BP	GO:0006996	organelle organization	IEA	AHRD
BP	GO:0007368	determination of left/right symmetry	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008104	protein localization	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008289	lipid binding	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	IEA	AHRD
BP	GO:0009605	response to external stimulus	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009799	specification of symmetry	None	Extended
BP	GO:0009855	determination of bilateral symmetry	None	Extended
BP	GO:0009887	animal organ morphogenesis	IEA	AHRD
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
MF	GO:0019899	enzyme binding	IEA	AHRD
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	IEA	AHRD
BP	GO:0030030	cell projection organization	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030182	neuron differentiation	IEA	AHRD
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030695	GTPase regulator activity	None	Extended
CC	GO:0031974	membrane-enclosed lumen	None	Extended
CC	GO:0031981	nuclear lumen	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035091	phosphatidylinositol binding	IEA	AHRD
BP	GO:0035295	tube development	IEA	AHRD
CC	GO:0042995	cell projection	None	Extended
CC	GO:0043005	neuron projection	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0043233	organelle lumen	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048468	cell development	IEA	AHRD
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	IEA	AHRD
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEA	AHRD
BP	GO:0048793	pronephros development	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	IEA	AHRD
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	IEA	AHRD
BP	GO:0051641	cellular localization	IEA	AHRD
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	IEA	AHRD
BP	GO:0060429	epithelium development	IEA	AHRD
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
BP	GO:0061371	determination of heart left/right asymmetry	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
CC	GO:0070013	intracellular organelle lumen	None	Extended
MF	GO:0070300	phosphatidic acid binding	IEA	AHRD
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080134	regulation of response to stress	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	IEA	AHRD
CC	GO:0097730	non-motile cilium	None	Extended
CC	GO:0097731	9+0 non-motile cilium	None	Extended
CC	GO:0097733	photoreceptor cell cilium	IEA	AHRD
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
BP	GO:0120036	plasma membrane bounded cell projection organization	IEA	AHRD
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000165	MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0001934	positive regulation of protein phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002229	defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
MF	GO:0004709	MAP kinase kinase kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004713	protein tyrosine kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005769	early endosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006909	phagocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007584	response to nutrient	IEP	Predict GO terms from Neighborhoods
BP	GO:0009637	response to blue light	IEP	Predict GO terms from Neighborhoods
BP	GO:0009641	shade avoidance	IEP	Predict GO terms from Neighborhoods
BP	GO:0009646	response to absence of light	IEP	Predict GO terms from Neighborhoods
BP	GO:0009647	skotomorphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009648	photoperiodism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009649	entrainment of circadian clock	IEP	Predict GO terms from Neighborhoods
BP	GO:0009685	gibberellin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009686	gibberellin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009744	response to sucrose	IEP	Predict GO terms from Neighborhoods
BP	GO:0009746	response to hexose	IEP	Predict GO terms from Neighborhoods
BP	GO:0009750	response to fructose	IEP	Predict GO terms from Neighborhoods
BP	GO:0009756	carbohydrate mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010017	red or far-red light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010099	regulation of photomorphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010100	negative regulation of photomorphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010114	response to red light	IEP	Predict GO terms from Neighborhoods
BP	GO:0010119	regulation of stomatal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0010182	sugar mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010212	response to ionizing radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010218	response to far red light	IEP	Predict GO terms from Neighborhoods
BP	GO:0010562	positive regulation of phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010720	positive regulation of cell development	IEP	Predict GO terms from Neighborhoods
CC	GO:0012505	endomembrane system	IEP	Predict GO terms from Neighborhoods
CC	GO:0012510	trans-Golgi network transport vesicle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016101	diterpenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016102	diterpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0018105	peptidyl-serine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018108	peptidyl-tyrosine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018209	peptidyl-serine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018212	peptidyl-tyrosine modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0030139	endocytic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0030447	filamentous growth	IEP	Predict GO terms from Neighborhoods
CC	GO:0030658	transport vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030660	Golgi-associated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030662	coated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030665	clathrin-coated vesicle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031098	stress-activated protein kinase signaling cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0031344	regulation of cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031346	positive regulation of cell projection organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031464	Cul4A-RING E3 ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031670	cellular response to nutrient	IEP	Predict GO terms from Neighborhoods
BP	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033674	positive regulation of kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034284	response to monosaccharide	IEP	Predict GO terms from Neighborhoods
BP	GO:0034285	response to disaccharide	IEP	Predict GO terms from Neighborhoods
BP	GO:0036289	peptidyl-serine autophosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0040034	regulation of development, heterochronic	IEP	Predict GO terms from Neighborhoods
BP	GO:0042327	positive regulation of phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042752	regulation of circadian rhythm	IEP	Predict GO terms from Neighborhoods
BP	GO:0043549	regulation of kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044182	filamentous growth of a population of unicellular organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0045013	carbon catabolite repression of transcription	IEP	Predict GO terms from Neighborhoods
CC	GO:0045335	phagocytic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045732	positive regulation of protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045859	regulation of protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045860	positive regulation of protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045862	positive regulation of proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045937	positive regulation of phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045990	carbon catabolite regulation of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	Predict GO terms from Neighborhoods
BP	GO:0048572	short-day photoperiodism	IEP	Predict GO terms from Neighborhoods
BP	GO:0048573	photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0048575	short-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0048580	regulation of post-embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048585	negative regulation of response to stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0050829	defense response to Gram-negative bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051347	positive regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051403	stress-activated MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0060284	regulation of cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061136	regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061984	catabolite repression	IEP	Predict GO terms from Neighborhoods
BP	GO:0061985	carbon catabolite repression	IEP	Predict GO terms from Neighborhoods
BP	GO:0071489	cellular response to red or far red light	IEP	Predict GO terms from Neighborhoods
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1900150	regulation of defense response to fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:1901420	negative regulation of response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:1901800	positive regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903050	regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903052	positive regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905958	negative regulation of cellular response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:2000026	regulation of multicellular organismal development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000030	regulation of response to red or far red light	IEP	Predict GO terms from Neighborhoods
BP	GO:2000031	regulation of salicylic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000035	regulation of stem cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:2000058	regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000060	positive regulation of ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000069	regulation of post-embryonic root development	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000408	Reg_chr_condens	599	646
IPR000408	Reg_chr_condens	545	594
IPR000408	Reg_chr_condens	430	478
IPR000408	Reg_chr_condens	325	373
IPR000408	Reg_chr_condens	493	542
IPR000408	Reg_chr_condens	376	426
IPR027988	BRX_N	910	941
IPR001849	PH_domain	17	123
IPR000306	Znf_FYVE	650	716
IPR011011	Znf_FYVE_PHD	651	720
IPR013591	Brevis_radix_dom	1026	1081
IPR009091	RCC1/BLIP-II	262	651

External Links

No external refs found!

SOLTUB.AGRIA.G00000042250

Expression Profile

Co-expression Networks

Functional Annotation