SOLTUB.AGRIA.G00000000458

Description : Protein accumulation and replication of chloroplasts 3

Gene families : OG_02_0011893 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000000458
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_229

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003779	actin binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006897	endocytosis	None	Extended
BP	GO:0006898	receptor-mediated endocytosis	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009527	plastid outer membrane	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009570	chloroplast stroma	IEA	AHRD
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	None	Extended
CC	GO:0009707	chloroplast outer membrane	IEA	AHRD
BP	GO:0009791	post-embryonic development	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010020	chloroplast fission	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	None	Extended
MF	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	IEA	AHRD
CC	GO:0016324	apical plasma membrane	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
CC	GO:0019867	outer membrane	None	Extended
CC	GO:0019898	extrinsic component of membrane	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031312	extrinsic component of organelle membrane	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0031969	chloroplast membrane	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0035452	extrinsic component of plastid membrane	IEA	AHRD
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042995	cell projection	None	Extended
BP	GO:0043572	plastid fission	None	Extended
MF	GO:0043621	protein self-association	IEA	AHRD
BP	GO:0048285	organelle fission	None	Extended
BP	GO:0048731	system development	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072583	clathrin-dependent endocytosis	IEA	AHRD
CC	GO:0090406	pollen tube	IEA	AHRD
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098590	plasma membrane region	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000372	Group I intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predict GO terms from Neighborhoods
BP	GO:0000376	RNA splicing, via transesterification reactions with guanosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001822	kidney development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001947	heart looping	IEP	Predict GO terms from Neighborhoods
BP	GO:0003143	embryonic heart tube morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0003146	heart jogging	IEP	Predict GO terms from Neighborhoods
BP	GO:0003279	cardiac septum development	IEP	Predict GO terms from Neighborhoods
BP	GO:0003283	atrial septum development	IEP	Predict GO terms from Neighborhoods
BP	GO:0003341	cilium movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0003351	epithelial cilium movement involved in extracellular fluid movement	IEP	Predict GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004222	metalloendopeptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005871	kinesin complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0005982	starch metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005983	starch catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006858	extracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006879	cellular iron ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007368	determination of left/right symmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0007601	visual perception	IEP	Predict GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009526	plastid envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009662	etioplast organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009836	fruit ripening, climacteric	IEP	Predict GO terms from Neighborhoods
BP	GO:0009855	determination of bilateral symmetry	IEP	Predict GO terms from Neighborhoods
CC	GO:0009941	chloroplast envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0010239	chloroplast mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0010288	response to lead ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010312	detoxification of zinc ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010467	gene expression	IEP	Predict GO terms from Neighborhoods
MF	GO:0015232	heme transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016055	Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016108	tetraterpenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016109	tetraterpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016116	carotenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016117	carotenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016781	phosphotransferase activity, paired acceptors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019200	carbohydrate kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030198	extracellular matrix organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030324	lung development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031154	culmination involved in sorocarp development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031425	chloroplast RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031426	polycistronic mRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0031967	organelle envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0031975	envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0032092	positive regulation of protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034755	iron ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035469	determination of pancreatic left/right asymmetry	IEP	Predict GO terms from Neighborhoods
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0042646	plastid nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0043062	extracellular structure organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0043268	positive regulation of potassium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044247	cellular polysaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045292	mRNA cis splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0045494	photoreceptor cell maintenance	IEP	Predict GO terms from Neighborhoods
MF	GO:0046608	carotenoid isomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048496	maintenance of animal organ identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048564	photosystem I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0048793	pronephros development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050953	sensory perception of light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051176	positive regulation of sulfur metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051189	prosthetic group metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0051752	phosphoglucan, water dikinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060026	convergent extension	IEP	Predict GO terms from Neighborhoods
BP	GO:0060027	convergent extension involved in gastrulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060271	cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0060287	epithelial cilium movement involved in determination of left/right asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0060562	epithelial tube morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060972	left/right pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060993	kidney morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0070121	Kupffer's vesicle development	IEP	Predict GO terms from Neighborhoods
BP	GO:0070453	regulation of heme biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070455	positive regulation of heme biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071907	determination of digestive tract left/right asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0071908	determination of intestine left/right asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0071909	determination of stomach left/right asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0071910	determination of liver left/right asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0072189	ureter development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090090	negative regulation of canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090175	regulation of establishment of planar polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090178	regulation of establishment of planar polarity involved in neural tube closure	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0097543	ciliary inversin compartment	IEP	Predict GO terms from Neighborhoods
CC	GO:0097546	ciliary base	IEP	Predict GO terms from Neighborhoods
BP	GO:0140040	mitochondrial polycistronic RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0140053	mitochondrial gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0140466	iron-sulfur cluster export from the mitochondrion	IEP	Predict GO terms from Neighborhoods
MF	GO:0140481	ABC-type iron-sulfur cluster transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901379	regulation of potassium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901381	positive regulation of potassium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901403	positive regulation of tetrapyrrole metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901465	positive regulation of tetrapyrrole biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901678	iron coordination entity transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902497	iron-sulfur cluster transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903286	regulation of potassium ion import	IEP	Predict GO terms from Neighborhoods
BP	GO:1903288	positive regulation of potassium ion import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1903329	regulation of iron-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1903331	positive regulation of iron-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1903426	regulation of reactive oxygen species biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903427	negative regulation of reactive oxygen species biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904064	positive regulation of cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905114	cell surface receptor signaling pathway involved in cell-cell signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:1905515	non-motile cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:2000027	regulation of animal organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000050	regulation of non-canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000095	regulation of Wnt signaling pathway, planar cell polarity pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000167	regulation of planar cell polarity pathway involved in neural tube closure	IEP	Predict GO terms from Neighborhoods
BP	GO:2000378	negative regulation of reactive oxygen species metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036525	Tubulin/FtsZ_GTPase_sf	88	254
IPR003409	MORN	640	661
IPR003409	MORN	686	708
IPR003409	MORN	733	744
IPR003409	MORN	663	685

External Links

No external refs found!

SOLTUB.AGRIA.G00000000458

Expression Profile

Co-expression Networks

Functional Annotation