SOLTUB.AGRIA.G00000005404


Description : Transducin family protein / WD-40 repeat family protein


Gene families : OG_02_0012685 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000005404
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_100


Type GO Term Name Evidence Source
BP GO:0000122 negative regulation of transcription by RNA polymerase II IEA AHRD
MF GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA AHRD
BP GO:0002244 hematopoietic progenitor cell differentiation IEA AHRD
MF GO:0003723 RNA binding IEA AHRD
CC GO:0005677 chromatin silencing complex IEA AHRD
CC GO:0005700 polytene chromosome IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0006281 DNA repair IEA AHRD
BP GO:0006335 DNA replication-dependent chromatin assembly IEA AHRD
BP GO:0006349 regulation of gene expression by genomic imprinting IEA AHRD
BP GO:0007307 eggshell chorion gene amplification IEA AHRD
BP GO:0007346 regulation of mitotic cell cycle IEA AHRD
BP GO:0007379 segment specification IEA AHRD
MF GO:0008094 ATP-dependent activity, acting on DNA IEA AHRD
BP GO:0008284 positive regulation of cell population proliferation IEA AHRD
BP GO:0009555 pollen development IEA AHRD
BP GO:0009793 embryo development ending in seed dormancy IEA AHRD
BP GO:0009909 regulation of flower development IEA AHRD
BP GO:0010026 trichome differentiation IEA AHRD
BP GO:0010214 seed coat development IEA AHRD
BP GO:0016573 histone acetylation IEA AHRD
CC GO:0016581 NuRD complex IEA AHRD
BP GO:0016584 obsolete nucleosome positioning IEA AHRD
CC GO:0016589 NURF complex IEA AHRD
BP GO:0030308 negative regulation of cell growth IEA AHRD
BP GO:0031101 fin regeneration IEA AHRD
MF GO:0031491 nucleosome binding IEA AHRD
BP GO:0031507 heterochromatin formation IEA AHRD
CC GO:0031523 Myb complex IEA AHRD
CC GO:0033186 CAF-1 complex IEA AHRD
BP GO:0034968 histone lysine methylation IEA AHRD
CC GO:0035098 ESC/E(Z) complex IEA AHRD
MF GO:0042393 histone binding IEA AHRD
BP GO:0042766 obsolete nucleosome mobilization IEA AHRD
MF GO:0042803 protein homodimerization activity IEA AHRD
MF GO:0042826 histone deacetylase binding IEA AHRD
BP GO:0045787 positive regulation of cell cycle IEA AHRD
BP GO:0045893 positive regulation of DNA-templated transcription IEA AHRD
BP GO:0046689 response to mercury ion IEA AHRD
BP GO:0048366 leaf development IEA AHRD
BP GO:0048545 response to steroid hormone IEA AHRD
BP GO:0070370 cellular heat acclimation IEA AHRD
CC GO:0070822 Sin3-type complex IEA AHRD
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEA AHRD
BP GO:2000653 regulation of genetic imprinting IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000183 rDNA heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predict GO terms from Neighborhoods
CC GO:0000228 nuclear chromosome IEP Predict GO terms from Neighborhoods
BP GO:0000280 nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predict GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predict GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0000792 heterochromatin IEP Predict GO terms from Neighborhoods
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0001101 response to acid chemical IEP Predict GO terms from Neighborhoods
MF GO:0003714 transcription corepressor activity IEP Predict GO terms from Neighborhoods
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007281 germ cell development IEP Predict GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008276 protein methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0009415 response to water IEP Predict GO terms from Neighborhoods
BP GO:0009624 response to nematode IEP Predict GO terms from Neighborhoods
BP GO:0010044 response to aluminum ion IEP Predict GO terms from Neighborhoods
BP GO:0010212 response to ionizing radiation IEP Predict GO terms from Neighborhoods
BP GO:0010332 response to gamma radiation IEP Predict GO terms from Neighborhoods
BP GO:0010564 regulation of cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0016036 cellular response to phosphate starvation IEP Predict GO terms from Neighborhoods
MF GO:0016278 lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0018027 peptidyl-lysine dimethylation IEP Predict GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0030912 response to deep water IEP Predict GO terms from Neighborhoods
BP GO:0031047 gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0031048 small non-coding RNA-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0031060 regulation of histone methylation IEP Predict GO terms from Neighborhoods
BP GO:0031137 regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0031138 negative regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Predict GO terms from Neighborhoods
BP GO:0033045 regulation of sister chromatid segregation IEP Predict GO terms from Neighborhoods
CC GO:0033553 rDNA heterochromatin IEP Predict GO terms from Neighborhoods
CC GO:0033620 Mei2 nuclear dot complex IEP Predict GO terms from Neighborhoods
CC GO:0034064 Tor2-Mei2-Ste11 complex IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0035064 methylated histone binding IEP Predict GO terms from Neighborhoods
BP GO:0040020 regulation of meiotic nuclear division IEP Predict GO terms from Neighborhoods
MF GO:0042054 histone methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0045836 positive regulation of meiotic nuclear division IEP Predict GO terms from Neighborhoods
MF GO:0046974 histone methyltransferase activity (H3-K9 specific) IEP Predict GO terms from Neighborhoods
MF GO:0047485 protein N-terminus binding IEP Predict GO terms from Neighborhoods
BP GO:0048232 male gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0048285 organelle fission IEP Predict GO terms from Neighborhoods
BP GO:0051445 regulation of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051446 positive regulation of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051570 regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051783 regulation of nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0051785 positive regulation of nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0051983 regulation of chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0061062 regulation of nematode larval development IEP Predict GO terms from Neighborhoods
BP GO:0071470 cellular response to osmotic stress IEP Predict GO terms from Neighborhoods
BP GO:0071472 cellular response to salt stress IEP Predict GO terms from Neighborhoods
BP GO:0072710 response to hydroxyurea IEP Predict GO terms from Neighborhoods
BP GO:0072718 response to cisplatin IEP Predict GO terms from Neighborhoods
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0090068 positive regulation of cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0110046 signal transduction involved in cell cycle switching, mitotic to meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0140013 meiotic nuclear division IEP Predict GO terms from Neighborhoods
MF GO:0140030 modification-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140034 methylation-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140311 protein sequestering activity IEP Predict GO terms from Neighborhoods
MF GO:0140313 molecular sequestering activity IEP Predict GO terms from Neighborhoods
BP GO:0140538 negative regulation of conjugation with zygote IEP Predict GO terms from Neighborhoods
BP GO:0140718 facultative heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:1901987 regulation of cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901989 positive regulation of cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901993 regulation of meiotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901995 positive regulation of meiotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902101 positive regulation of metaphase/anaphase transition of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902102 regulation of metaphase/anaphase transition of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902104 positive regulation of metaphase/anaphase transition of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902751 positive regulation of cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
BP GO:1905132 regulation of meiotic chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905134 positive regulation of meiotic chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905189 regulation of metaphase/anaphase transition of meiosis II IEP Predict GO terms from Neighborhoods
BP GO:1905191 positive regulation of metaphase/anaphase transition of meiosis II IEP Predict GO terms from Neighborhoods
BP GO:1905818 regulation of chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905820 positive regulation of chromosome separation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001680 WD40_repeat 293 331
IPR001680 WD40_repeat 209 244
IPR001680 WD40_repeat 352 387
IPR036322 WD40_repeat_dom_sf 104 389
IPR022052 Histone-bd_RBBP4_N 18 86
No external refs found!