SOLTUB.AGRIA.G00000005651

Description : B3 domain-containing transcription factor vrn1

Gene families : OG_02_0007826 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000005651
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_44

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009909	regulation of flower development	IEA	AHRD
BP	GO:0010048	vernalization response	IEA	AHRD
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000025	maltose catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
MF	GO:0000700	mismatch base pair DNA N-glycosylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001845	phagolysosome assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004709	MAP kinase kinase kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005048	signal sequence binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0005767	secondary lysosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0005977	glycogen metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005982	starch metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005983	starch catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005984	disaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006112	energy reserve metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006304	DNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006405	RNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006406	mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006482	protein demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006606	protein import into nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006909	phagocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007040	lysosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007088	regulation of mitotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0007093	mitotic cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0007095	mitotic G2 DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0007260	tyrosine phosphorylation of STAT protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
MF	GO:0008139	nuclear localization sequence binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008214	protein dealkylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008263	pyrimidine-specific mismatch base pair DNA N-glycosylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008630	intrinsic apoptotic signaling pathway in response to DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:0009251	glucan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009313	oligosaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009685	gibberellin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009686	gibberellin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009750	response to fructose	IEP	Predict GO terms from Neighborhoods
BP	GO:0010037	response to carbon dioxide	IEP	Predict GO terms from Neighborhoods
BP	GO:0010104	regulation of ethylene-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010105	negative regulation of ethylene-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0010297	heteropolysaccharide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0010344	seed oilbody biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0010564	regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010972	negative regulation of G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0012510	trans-Golgi network transport vesicle membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0018108	peptidyl-tyrosine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018126	protein hydroxylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018212	peptidyl-tyrosine modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030247	polysaccharide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030587	sorocarp development	IEP	Predict GO terms from Neighborhoods
MF	GO:0030619	U1 snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030620	U2 snRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030658	transport vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030660	Golgi-associated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030662	coated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030665	clathrin-coated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030666	endocytic vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030670	phagocytic vesicle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0032010	phagolysosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0032388	positive regulation of intracellular transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0032451	demethylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0036289	peptidyl-serine autophosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042306	regulation of protein import into nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0042307	positive regulation of protein import into nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044247	cellular polysaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044773	mitotic DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044774	mitotic DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044818	mitotic G2/M transition checkpoint	IEP	Predict GO terms from Neighborhoods
CC	GO:0045335	phagocytic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045472	response to ether	IEP	Predict GO terms from Neighborhoods
BP	GO:0045995	regulation of embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0046352	disaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046822	regulation of nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0046824	positive regulation of nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051028	mRNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Predict GO terms from Neighborhoods
BP	GO:0051170	import into nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0060188	regulation of protein desumoylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0061608	nuclear import signal receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070297	regulation of phosphorelay signal transduction system	IEP	Predict GO terms from Neighborhoods
BP	GO:0070298	negative regulation of phosphorelay signal transduction system	IEP	Predict GO terms from Neighborhoods
BP	GO:0070988	demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071244	cellular response to carbon dioxide	IEP	Predict GO terms from Neighborhoods
BP	GO:0080171	lytic vacuole organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0090316	positive regulation of intracellular protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0097190	apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0097193	intrinsic apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0102500	beta-maltose 4-alpha-glucanotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140104	molecular carrier activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900180	regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900182	positive regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1902749	regulation of cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902750	negative regulation of cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1903013	response to differentiation-inducing factor 1	IEP	Predict GO terms from Neighborhoods
BP	GO:1904892	regulation of receptor signaling pathway via STAT	IEP	Predict GO terms from Neighborhoods
BP	GO:1904894	positive regulation of receptor signaling pathway via STAT	IEP	Predict GO terms from Neighborhoods
BP	GO:2000031	regulation of salicylic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000035	regulation of stem cell division	IEP	Predict GO terms from Neighborhoods
MF	GO:2001070	starch binding	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	14	101
IPR003340	B3_DNA-bd	679	775
IPR015300	DNA-bd_pseudobarrel_sf	12	111
IPR015300	DNA-bd_pseudobarrel_sf	676	775

External Links

No external refs found!

SOLTUB.AGRIA.G00000005651

Expression Profile

Co-expression Networks

Functional Annotation