SOLTUB.AGRIA.G00000006094

Description : E3 ubiquitin-protein ligase ring1-like protein

Gene families : OG_02_0002395 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006094
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_12

Type	GO Term	Name	Evidence	Source
BP	GO:0000209	protein polyubiquitination	IEA	AHRD
BP	GO:0001666	response to hypoxia	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	AHRD
MF	GO:0016740	transferase activity	IEA	AHRD
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0035966	response to topologically incorrect protein	None	Extended
BP	GO:0035967	cellular response to topologically incorrect protein	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0036294	cellular response to decreased oxygen levels	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0051787	misfolded protein binding	IEA	AHRD
BP	GO:0051788	response to misfolded protein	None	Extended
BP	GO:0051865	protein autoubiquitination	IEA	AHRD
MF	GO:0061630	ubiquitin protein ligase activity	IEA	AHRD
BP	GO:0061635	regulation of protein complex stability	IEA	AHRD
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071218	cellular response to misfolded protein	IEA	AHRD
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071453	cellular response to oxygen levels	None	Extended
BP	GO:0071456	cellular response to hypoxia	IEA	AHRD
BP	GO:0071629	cytoplasm protein quality control by the ubiquitin-proteasome system	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:0140455	cytoplasm protein quality control	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001072	transcription antitermination factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001654	eye development	IEP	Predict GO terms from Neighborhoods
MF	GO:0005388	P-type calcium transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015662	P-type ion transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0022008	neurogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030218	erythrocyte differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0030672	synaptic vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031514	motile cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0031554	regulation of termination of DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
CC	GO:0042734	presynaptic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0043242	negative regulation of protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043457	regulation of cellular respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0048699	generation of neurons	IEP	Predict GO terms from Neighborhoods
BP	GO:0051480	regulation of cytosolic calcium ion concentration	IEP	Predict GO terms from Neighborhoods
BP	GO:0060567	negative regulation of termination of DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0062131	3-butenylglucosinolate 2-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0099501	exocytic vesicle membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0140358	P-type transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	186	218

External Links

No external refs found!

SOLTUB.AGRIA.G00000006094

Expression Profile

Co-expression Networks

Functional Annotation