SOLTUB.AGRIA.G00000006100

Description : Eukaryotic translation initiation factor 6

Gene families : OG_02_0003755 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006100
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_122

Type	GO Term	Name	Evidence	Source
BP	GO:0000054	ribosomal subunit export from nucleus	IEA	AHRD
BP	GO:0000460	maturation of 5.8S rRNA	None	Extended
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0000470	maturation of LSU-rRNA	None	Extended
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003743	translation initiation factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005638	lamin filament	IEA	AHRD
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005882	intermediate filament	None	Extended
BP	GO:0006109	regulation of carbohydrate metabolic process	None	Extended
BP	GO:0006110	regulation of glycolytic process	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006140	regulation of nucleotide metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006413	translational initiation	IEA	AHRD
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010565	regulation of cellular ketone metabolic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0016441	post-transcriptional gene silencing	None	Extended
BP	GO:0017148	negative regulation of translation	None	Extended
BP	GO:0019216	regulation of lipid metabolic process	None	Extended
BP	GO:0019217	regulation of fatty acid metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
BP	GO:0030490	maturation of SSU-rRNA	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0030687	preribosome, large subunit precursor	IEA	AHRD
BP	GO:0031047	gene silencing by RNA	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031503	protein-containing complex localization	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032868	response to insulin	IEA	AHRD
BP	GO:0032870	cellular response to hormone stimulus	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033750	ribosome localization	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034249	negative regulation of cellular amide metabolic process	None	Extended
BP	GO:0034250	positive regulation of cellular amide metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0035194	post-transcriptional gene silencing by RNA	None	Extended
BP	GO:0035195	miRNA-mediated gene silencing	None	Extended
BP	GO:0035278	miRNA-mediated gene silencing by inhibition of translation	IEA	AHRD
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042255	ribosome assembly	None	Extended
BP	GO:0042256	mature ribosome assembly	IEA	AHRD
BP	GO:0042304	regulation of fatty acid biosynthetic process	IEA	AHRD
BP	GO:0042325	regulation of phosphorylation	None	Extended
MF	GO:0043021	ribonucleoprotein complex binding	None	Extended
MF	GO:0043022	ribosome binding	IEA	AHRD
MF	GO:0043023	ribosomal large subunit binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043434	response to peptide hormone	None	Extended
BP	GO:0043467	regulation of generation of precursor metabolites and energy	None	Extended
BP	GO:0043470	regulation of carbohydrate catabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045637	regulation of myeloid cell differentiation	None	Extended
BP	GO:0045652	regulation of megakaryocyte differentiation	IEA	AHRD
BP	GO:0045727	positive regulation of translation	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046890	regulation of lipid biosynthetic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051656	establishment of organelle localization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0062012	regulation of small molecule metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071215	cellular response to abscisic acid stimulus	IEA	AHRD
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071396	cellular response to lipid	None	Extended
BP	GO:0071495	cellular response to endogenous stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0097306	cellular response to alcohol	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0099081	supramolecular polymer	None	Extended
CC	GO:0099512	supramolecular fiber	None	Extended
CC	GO:0099513	polymeric cytoskeletal fiber	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140694	non-membrane-bounded organelle assembly	None	Extended
BP	GO:1900542	regulation of purine nucleotide metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901652	response to peptide	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901701	cellular response to oxygen-containing compound	None	Extended
BP	GO:1902626	assembly of large subunit precursor of preribosome	IEA	AHRD
BP	GO:1903578	regulation of ATP metabolic process	None	Extended
BP	GO:1903706	regulation of hemopoiesis	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0001824	blastocyst development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002521	leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002573	myeloid leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0004175	endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004462	lactoylglutathione lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006089	lactate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006355	regulation of DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006749	glutathione metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006950	response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0006970	response to osmotic stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0006972	hyperosmotic response	IEP	Predict GO terms from Neighborhoods
MF	GO:0008134	transcription factor binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0008540	proteasome regulatory particle, base subcomplex	IEP	Predict GO terms from Neighborhoods
BP	GO:0009056	catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009438	methylglyoxal metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009896	positive regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010498	proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010499	proteasomal ubiquitin-independent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010941	regulation of cell death	IEP	Predict GO terms from Neighborhoods
CC	GO:0016234	inclusion body	IEP	Predict GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016846	carbon-sulfur lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0017025	TBP-class protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	IEP	Predict GO terms from Neighborhoods
CC	GO:0019774	proteasome core complex, beta-subunit complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030099	myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030162	regulation of proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030316	osteoclast differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031334	positive regulation of protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0031597	cytosolic proteasome complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031983	vesicle lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0034774	secretory granule lumen	IEP	Predict GO terms from Neighborhoods
MF	GO:0036402	proteasome-activating activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042176	regulation of protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042180	cellular ketone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042182	ketone catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043066	negative regulation of apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043069	negative regulation of programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043248	proteasome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0044248	cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0045202	synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0045732	positive regulation of protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045862	positive regulation of proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045898	regulation of RNA polymerase II transcription preinitiation complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0045899	positive regulation of RNA polymerase II transcription preinitiation complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0046185	aldehyde catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051596	methylglyoxal catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0060205	cytoplasmic vesicle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0060260	regulation of transcription initiation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0060261	positive regulation of transcription initiation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0060548	negative regulation of cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0061136	regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061727	methylglyoxal catabolic process to lactate	IEP	Predict GO terms from Neighborhoods
MF	GO:0070003	threonine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070682	proteasome regulatory particle assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0140296	general transcription initiation factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901214	regulation of neuron death	IEP	Predict GO terms from Neighborhoods
BP	GO:1901215	negative regulation of neuron death	IEP	Predict GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901575	organic substance catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901800	positive regulation of proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903050	regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903052	positive regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
CC	GO:1904813	ficolin-1-rich granule lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1905369	endopeptidase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000142	regulation of DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000144	positive regulation of DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002769	eIF6	4	203
IPR002769	eIF6	4	224

External Links

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SOLTUB.AGRIA.G00000006100

Expression Profile

Co-expression Networks

Functional Annotation