SOLTUB.AGRIA.G00000006834


Description : 60s ribosomal protein l23


Gene families : OG_02_0000460 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006834
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_162


Type GO Term Name Evidence Source
BP GO:0000122 negative regulation of transcription by RNA polymerase II IEA AHRD
MF GO:0001223 transcription coactivator binding IEA AHRD
BP GO:0002181 cytoplasmic translation IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0003735 structural constituent of ribosome IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
BP GO:0008284 positive regulation of cell population proliferation IEA AHRD
BP GO:0010628 positive regulation of gene expression IEA AHRD
CC GO:0014069 postsynaptic density IEA AHRD
MF GO:0017022 myosin binding IEA AHRD
CC GO:0022625 cytosolic large ribosomal subunit IEA AHRD
MF GO:0031625 ubiquitin protein ligase binding IEA AHRD
BP GO:0032986 protein-DNA complex disassembly IEA AHRD
BP GO:0050821 protein stabilization IEA AHRD
BP GO:0051726 regulation of cell cycle IEA AHRD
MF GO:0070180 large ribosomal subunit rRNA binding IEA AHRD
BP GO:0072717 cellular response to actinomycin D IEA AHRD
CC GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane IEA AHRD
BP GO:1901798 positive regulation of signal transduction by p53 class mediator IEA AHRD
BP GO:1904667 negative regulation of ubiquitin protein ligase activity IEA AHRD
MF GO:1990948 ubiquitin ligase inhibitor activity IEA AHRD
BP GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000244 spliceosomal tri-snRNP complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0000245 spliceosomal complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0000387 spliceosomal snRNP assembly IEP Predict GO terms from Neighborhoods
BP GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000469 cleavage involved in rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0000470 maturation of LSU-rRNA IEP Predict GO terms from Neighborhoods
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000911 cytokinesis by cell plate formation IEP Predict GO terms from Neighborhoods
BP GO:0002182 cytoplasmic translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0002227 innate immune response in mucosa IEP Predict GO terms from Neighborhoods
BP GO:0002251 organ or tissue specific immune response IEP Predict GO terms from Neighborhoods
BP GO:0002385 mucosal immune response IEP Predict GO terms from Neighborhoods
BP GO:0002521 leukocyte differentiation IEP Predict GO terms from Neighborhoods
MF GO:0005539 glycosaminoglycan binding IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005684 U2-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005686 U2 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005688 U6 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005689 U12-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005774 vacuolar membrane IEP Predict GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Predict GO terms from Neighborhoods
CC GO:0005844 polysome IEP Predict GO terms from Neighborhoods
CC GO:0005886 plasma membrane IEP Predict GO terms from Neighborhoods
CC GO:0005911 cell-cell junction IEP Predict GO terms from Neighborhoods
BP GO:0006414 translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0006417 regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0006914 autophagy IEP Predict GO terms from Neighborhoods
BP GO:0006959 humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0007566 embryo implantation IEP Predict GO terms from Neighborhoods
MF GO:0008201 heparin binding IEP Predict GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Predict GO terms from Neighborhoods
BP GO:0009056 catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009410 response to xenobiotic stimulus IEP Predict GO terms from Neighborhoods
CC GO:0009506 plasmodesma IEP Predict GO terms from Neighborhoods
BP GO:0010090 trichome morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010608 post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Predict GO terms from Neighborhoods
CC GO:0015935 small ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016236 macroautophagy IEP Predict GO terms from Neighborhoods
CC GO:0016363 nuclear matrix IEP Predict GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0017070 U6 snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0017085 response to insecticide IEP Predict GO terms from Neighborhoods
BP GO:0019730 antimicrobial humoral response IEP Predict GO terms from Neighborhoods
BP GO:0019731 antibacterial humoral response IEP Predict GO terms from Neighborhoods
MF GO:0019838 growth factor binding IEP Predict GO terms from Neighborhoods
BP GO:0020027 hemoglobin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0022627 cytosolic small ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0030054 cell junction IEP Predict GO terms from Neighborhoods
BP GO:0030098 lymphocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030217 T cell differentiation IEP Predict GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
CC GO:0030666 endocytic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030687 preribosome, large subunit precursor IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
MF GO:0031386 protein tag IEP Predict GO terms from Neighborhoods
BP GO:0031589 cell-substrate adhesion IEP Predict GO terms from Neighborhoods
BP GO:0033119 negative regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0034248 regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035264 multicellular organism growth IEP Predict GO terms from Neighborhoods
CC GO:0035770 ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
BP GO:0042110 T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0042254 ribosome biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042273 ribosomal large subunit biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042541 hemoglobin biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0042788 polysomal ribosome IEP Predict GO terms from Neighborhoods
BP GO:0044085 cellular component biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0044248 cellular catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0045202 synapse IEP Predict GO terms from Neighborhoods
BP GO:0045292 mRNA cis splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0045471 response to ethanol IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predict GO terms from Neighborhoods
BP GO:0046631 alpha-beta T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0046632 alpha-beta T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0046649 lymphocyte activation IEP Predict GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Predict GO terms from Neighborhoods
MF GO:0048027 mRNA 5'-UTR binding IEP Predict GO terms from Neighborhoods
BP GO:0048863 stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0050830 defense response to Gram-positive bacterium IEP Predict GO terms from Neighborhoods
BP GO:0051291 protein heterooligomerization IEP Predict GO terms from Neighborhoods
BP GO:0051591 response to cAMP IEP Predict GO terms from Neighborhoods
BP GO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide IEP Predict GO terms from Neighborhoods
BP GO:0061919 process utilizing autophagic mechanism IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0070161 anchoring junction IEP Predict GO terms from Neighborhoods
MF GO:0070181 small ribosomal subunit rRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071320 cellular response to cAMP IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP Predict GO terms from Neighborhoods
MF GO:0097371 MDM2/MDM4 family protein binding IEP Predict GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0098588 bounding membrane of organelle IEP Predict GO terms from Neighborhoods
BP GO:0099171 presynaptic modulation of chemical synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0099547 regulation of translation at synapse, modulating synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0099577 regulation of translation at presynapse, modulating synaptic transmission IEP Predict GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Predict GO terms from Neighborhoods
CC GO:0120115 Lsm2-8 complex IEP Predict GO terms from Neighborhoods
BP GO:0140243 regulation of translation at synapse IEP Predict GO terms from Neighborhoods
BP GO:0140244 regulation of translation at presynapse IEP Predict GO terms from Neighborhoods
MF GO:1901681 sulfur compound binding IEP Predict GO terms from Neighborhoods
BP GO:1903131 mononuclear cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1904400 response to Thyroid stimulating hormone IEP Predict GO terms from Neighborhoods
BP GO:1904401 cellular response to Thyroid stimulating hormone IEP Predict GO terms from Neighborhoods
BP GO:1904587 response to glycoprotein IEP Predict GO terms from Neighborhoods
BP GO:1904588 cellular response to glycoprotein IEP Predict GO terms from Neighborhoods
CC GO:1990726 Lsm1-7-Pat1 complex IEP Predict GO terms from Neighborhoods
MF GO:1990932 5.8S rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR036853 Ribosomal_L14_sf 11 140
IPR000218 Ribosomal_L14P 22 140
No external refs found!