SOLTUB.AGRIA.G00000006952

Description : FAD-binding Berberine family protein

Gene families : OG_02_0000131 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006952
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000006950	No alias	Berberine bridge enzyme-like 13	0.02	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000006953	No alias	FAD-binding Berberine family protein	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000006950	No alias	Berberine bridge enzyme-like 13	0.02	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000006953	No alias	FAD-binding Berberine family protein	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000006950	No alias	Berberine bridge enzyme-like 13	0.02	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000006953	No alias	FAD-binding Berberine family protein	0.03	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0001666	response to hypoxia	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	IEA	AHRD
CC	GO:0005618	cell wall	None	Extended
CC	GO:0005783	endoplasmic reticulum	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006979	response to oxidative stress	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009505	plant-type cell wall	IEA	AHRD
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEA	AHRD
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009753	response to jasmonic acid	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	None	Extended
BP	GO:0010726	positive regulation of hydrogen peroxide metabolic process	None	Extended
BP	GO:0010728	regulation of hydrogen peroxide biosynthetic process	None	Extended
BP	GO:0010729	positive regulation of hydrogen peroxide biosynthetic process	IEA	AHRD
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	None	Extended
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0033993	response to lipid	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0036294	cellular response to decreased oxygen levels	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
MF	GO:0050268	coniferyl-alcohol dehydrogenase activity	IEA	AHRD
MF	GO:0050660	flavin adenine dinucleotide binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071453	cellular response to oxygen levels	None	Extended
BP	GO:0071456	cellular response to hypoxia	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0071949	FAD binding	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901696	cannabinoid biosynthetic process	IEA	AHRD
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903426	regulation of reactive oxygen species biosynthetic process	None	Extended
BP	GO:1903428	positive regulation of reactive oxygen species biosynthetic process	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended
BP	GO:2000379	positive regulation of reactive oxygen species metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001575	globoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0001576	globoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0001906	cell killing	IEP	Predict GO terms from Neighborhoods
MF	GO:0004090	carbonyl reductase (NADPH) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004175	endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004252	serine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005996	monosaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005997	xylulose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005998	xylulose catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006687	glycosphingolipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006688	glycosphingolipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006716	juvenile hormone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006718	juvenile hormone biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008236	serine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009044	xylan 1,4-beta-xylosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009609	response to symbiotic bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:0009610	response to symbiotic fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009856	pollination	IEP	Predict GO terms from Neighborhoods
CC	GO:0009897	external side of plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0010101	post-embryonic root morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010102	lateral root morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010103	stomatal complex morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010191	mucilage metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010337	regulation of salicylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010430	fatty acid omega-oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010440	stomatal lineage progression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010581	regulation of starch biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0015643	toxic substance binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0016052	carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016139	glycoside catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016830	carbon-carbon lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016832	aldehyde-lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0017171	serine hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019321	pentose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019323	pentose catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019566	arabinose metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031012	extracellular matrix	IEP	Predict GO terms from Neighborhoods
CC	GO:0031225	anchored component of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031640	killing of cells of another organism	IEP	Predict GO terms from Neighborhoods
CC	GO:0032578	aleurone grain membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0035250	UDP-galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0035267	NuA4 histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0036377	arbuscular mycorrhizal association	IEP	Predict GO terms from Neighborhoods
CC	GO:0043189	H4/H2A histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0043981	histone H4-K5 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045493	xylan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046365	monosaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046373	L-arabinose metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046556	alpha-L-arabinofuranosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0046593	mandelonitrile lyase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0046658	anchored component of plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0047886	farnesol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0048046	apoplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0048359	mucilage metabolic process involved in seed coat development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048653	anther development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050038	L-xylulose reductase (NADP+) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050512	lactosylceramide 4-alpha-galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050529	polyneuridine-aldehyde esterase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070001	aspartic-type peptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0071944	cell periphery	IEP	Predict GO terms from Neighborhoods
BP	GO:0080001	mucilage extrusion from seed coat	IEP	Predict GO terms from Neighborhoods
BP	GO:0090626	plant epidermis morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0097599	xylanase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0098552	side of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:1902562	H4 histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000895	hemicellulose catabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR012951	BBE	420	477
IPR006094	Oxid_FAD_bind_N	23	159
IPR036318	FAD-bd_PCMH-like_sf	21	194

External Links

No external refs found!

SOLTUB.AGRIA.G00000006952

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation