SOLTUB.AGRIA.G00000007339


Description : E3 ubiquitin-protein ligase RING1


Gene families : OG_02_0018738 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000007339
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_249


Type GO Term Name Evidence Source
BP GO:0000122 negative regulation of transcription by RNA polymerase II IEA AHRD
BP GO:0000278 mitotic cell cycle IEA AHRD
CC GO:0000791 euchromatin IEA AHRD
BP GO:0001702 gastrulation with mouth forming second IEA AHRD
BP GO:0001709 cell fate determination IEA AHRD
CC GO:0001739 sex chromatin IEA AHRD
MF GO:0003682 chromatin binding IEA AHRD
CC GO:0005635 nuclear envelope IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005829 cytosol IEA AHRD
MF GO:0008270 zinc ion binding IEA AHRD
BP GO:0009948 anterior/posterior axis specification IEA AHRD
BP GO:0010076 maintenance of floral meristem identity IEA AHRD
BP GO:0010077 maintenance of inflorescence meristem identity IEA AHRD
BP GO:0010492 maintenance of shoot apical meristem identity IEA AHRD
CC GO:0016604 nuclear body IEA AHRD
BP GO:0021510 spinal cord development IEA AHRD
BP GO:0022008 neurogenesis IEA AHRD
BP GO:0030708 germarium-derived female germ-line cyst encapsulation IEA AHRD
BP GO:0030713 ovarian follicle cell stalk formation IEA AHRD
BP GO:0032330 regulation of chondrocyte differentiation IEA AHRD
BP GO:0032526 response to retinoic acid IEA AHRD
BP GO:0033339 pectoral fin development IEA AHRD
CC GO:0035102 PRC1 complex IEA AHRD
BP GO:0036353 histone H2A-K119 monoubiquitination IEA AHRD
BP GO:0043433 negative regulation of DNA-binding transcription factor activity IEA AHRD
BP GO:0045498 sex comb development IEA AHRD
BP GO:0048701 embryonic cranial skeleton morphogenesis IEA AHRD
BP GO:0060042 retina morphogenesis in camera-type eye IEA AHRD
MF GO:0061630 ubiquitin protein ligase activity IEA AHRD
CC GO:0071339 MLL1 complex IEA AHRD
MF GO:0071535 RING-like zinc finger domain binding IEA AHRD
MF GO:0097027 ubiquitin-protein transferase activator activity IEA AHRD
BP GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000118 histone deacetylase complex IEP Predict GO terms from Neighborhoods
CC GO:0000776 kinetochore IEP Predict GO terms from Neighborhoods
CC GO:0000781 chromosome, telomeric region IEP Predict GO terms from Neighborhoods
MF GO:0000976 transcription cis-regulatory region binding IEP Predict GO terms from Neighborhoods
MF GO:0000993 RNA polymerase II complex binding IEP Predict GO terms from Neighborhoods
MF GO:0001067 transcription regulatory region nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0001098 basal transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001221 transcription coregulator binding IEP Predict GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003690 double-stranded DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003691 double-stranded telomeric DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003697 single-stranded DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003712 transcription coregulator activity IEP Predict GO terms from Neighborhoods
MF GO:0003714 transcription corepressor activity IEP Predict GO terms from Neighborhoods
MF GO:0003727 single-stranded RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003933 GTP cyclohydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0003935 GTP cyclohydrolase II activity IEP Predict GO terms from Neighborhoods
CC GO:0005667 transcription regulator complex IEP Predict GO terms from Neighborhoods
CC GO:0005701 polytene chromosome chromocenter IEP Predict GO terms from Neighborhoods
CC GO:0005703 polytene chromosome puff IEP Predict GO terms from Neighborhoods
CC GO:0005705 polytene chromosome interband IEP Predict GO terms from Neighborhoods
CC GO:0005721 pericentric heterochromatin IEP Predict GO terms from Neighborhoods
CC GO:0005819 spindle IEP Predict GO terms from Neighborhoods
BP GO:0006479 protein methylation IEP Predict GO terms from Neighborhoods
MF GO:0008134 transcription factor binding IEP Predict GO terms from Neighborhoods
BP GO:0008213 protein alkylation IEP Predict GO terms from Neighborhoods
BP GO:0009648 photoperiodism IEP Predict GO terms from Neighborhoods
BP GO:0009825 multidimensional cell growth IEP Predict GO terms from Neighborhoods
BP GO:0009910 negative regulation of flower development IEP Predict GO terms from Neighborhoods
BP GO:0010016 shoot system morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010048 vernalization response IEP Predict GO terms from Neighborhoods
CC GO:0010369 chromocenter IEP Predict GO terms from Neighborhoods
BP GO:0010638 positive regulation of organelle organization IEP Predict GO terms from Neighborhoods
BP GO:0016571 histone methylation IEP Predict GO terms from Neighborhoods
CC GO:0016605 PML body IEP Predict GO terms from Neighborhoods
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predict GO terms from Neighborhoods
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predict GO terms from Neighborhoods
BP GO:0016925 protein sumoylation IEP Predict GO terms from Neighborhoods
CC GO:0017053 transcription repressor complex IEP Predict GO terms from Neighborhoods
BP GO:0018022 peptidyl-lysine methylation IEP Predict GO terms from Neighborhoods
BP GO:0018023 peptidyl-lysine trimethylation IEP Predict GO terms from Neighborhoods
BP GO:0018205 peptidyl-lysine modification IEP Predict GO terms from Neighborhoods
MF GO:0019238 cyclohydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0019789 SUMO transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0030544 Hsp70 protein binding IEP Predict GO terms from Neighborhoods
MF GO:0030674 protein-macromolecule adaptor activity IEP Predict GO terms from Neighborhoods
BP GO:0031056 regulation of histone modification IEP Predict GO terms from Neighborhoods
BP GO:0031058 positive regulation of histone modification IEP Predict GO terms from Neighborhoods
BP GO:0031060 regulation of histone methylation IEP Predict GO terms from Neighborhoods
BP GO:0031062 positive regulation of histone methylation IEP Predict GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Predict GO terms from Neighborhoods
BP GO:0031334 positive regulation of protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0031445 regulation of heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0031453 positive regulation of heterochromatin formation IEP Predict GO terms from Neighborhoods
MF GO:0032182 ubiquitin-like protein binding IEP Predict GO terms from Neighborhoods
MF GO:0032183 SUMO binding IEP Predict GO terms from Neighborhoods
BP GO:0032259 methylation IEP Predict GO terms from Neighborhoods
BP GO:0032784 regulation of DNA-templated transcription elongation IEP Predict GO terms from Neighborhoods
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Predict GO terms from Neighborhoods
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Predict GO terms from Neighborhoods
BP GO:0033697 obsolete positive regulation of extent of heterochromatin assembly IEP Predict GO terms from Neighborhoods
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0034502 protein localization to chromosome IEP Predict GO terms from Neighborhoods
BP GO:0034605 cellular response to heat IEP Predict GO terms from Neighborhoods
BP GO:0034770 histone H4-K20 methylation IEP Predict GO terms from Neighborhoods
BP GO:0034773 histone H4-K20 trimethylation IEP Predict GO terms from Neighborhoods
BP GO:0034968 histone lysine methylation IEP Predict GO terms from Neighborhoods
MF GO:0035064 methylated histone binding IEP Predict GO terms from Neighborhoods
BP GO:0036003 positive regulation of transcription from RNA polymerase II promoter in response to stress IEP Predict GO terms from Neighborhoods
MF GO:0042162 telomeric DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Predict GO terms from Neighborhoods
MF GO:0042802 identical protein binding IEP Predict GO terms from Neighborhoods
MF GO:0042826 histone deacetylase binding IEP Predict GO terms from Neighborhoods
MF GO:0043021 ribonucleoprotein complex binding IEP Predict GO terms from Neighborhoods
MF GO:0043047 single-stranded telomeric DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0043175 RNA polymerase core enzyme binding IEP Predict GO terms from Neighborhoods
BP GO:0043254 regulation of protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0043414 macromolecule methylation IEP Predict GO terms from Neighborhoods
MF GO:0043565 sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0043620 regulation of DNA-templated transcription in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0044089 positive regulation of cellular component biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0045857 obsolete negative regulation of molecular function, epigenetic IEP Predict GO terms from Neighborhoods
BP GO:0048573 photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048732 gland development IEP Predict GO terms from Neighborhoods
BP GO:0048733 sebaceous gland development IEP Predict GO terms from Neighborhoods
MF GO:0051219 phosphoprotein binding IEP Predict GO terms from Neighborhoods
BP GO:0051570 regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
MF GO:0060090 molecular adaptor activity IEP Predict GO terms from Neighborhoods
BP GO:0061408 positive regulation of transcription from RNA polymerase II promoter in response to heat stress IEP Predict GO terms from Neighborhoods
MF GO:0061665 SUMO ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0070063 RNA polymerase binding IEP Predict GO terms from Neighborhoods
BP GO:0070868 obsolete heterochromatin organization involved in chromatin silencing IEP Predict GO terms from Neighborhoods
BP GO:0071168 protein localization to chromatin IEP Predict GO terms from Neighborhoods
BP GO:0090308 regulation of DNA methylation-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0090309 positive regulation of DNA methylation-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Predict GO terms from Neighborhoods
CC GO:0090734 site of DNA damage IEP Predict GO terms from Neighborhoods
CC GO:0098687 chromosomal region IEP Predict GO terms from Neighborhoods
MF GO:0098847 sequence-specific single stranded DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0099122 RNA polymerase II C-terminal domain binding IEP Predict GO terms from Neighborhoods
BP GO:0120261 regulation of heterochromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0120263 positive regulation of heterochromatin organization IEP Predict GO terms from Neighborhoods
MF GO:0140030 modification-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140034 methylation-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140297 DNA-binding transcription factor binding IEP Predict GO terms from Neighborhoods
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:1902275 regulation of chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:1905269 positive regulation of chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:1905632 protein localization to euchromatin IEP Predict GO terms from Neighborhoods
BP GO:1905634 regulation of protein localization to chromatin IEP Predict GO terms from Neighborhoods
BP GO:1905644 regulation of FACT complex assembly IEP Predict GO terms from Neighborhoods
BP GO:1905646 positive regulation of FACT complex assembly IEP Predict GO terms from Neighborhoods
MF GO:1990226 histone methyltransferase binding IEP Predict GO terms from Neighborhoods
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Predict GO terms from Neighborhoods
MF GO:1990841 promoter-specific chromatin binding IEP Predict GO terms from Neighborhoods
BP GO:2000242 negative regulation of reproductive process IEP Predict GO terms from Neighborhoods
BP GO:2001252 positive regulation of chromosome organization IEP Predict GO terms from Neighborhoods

No InterPro domains available for this sequence

No external refs found!