SOLTUB.AGRIA.G00000007693

Description : Transcription factor jumonji (jmjC) domain-containing protein

Gene families : OG_02_0008049 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000007693
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_56

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0003712	transcription coregulator activity	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	IEA	AHRD
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007276	gamete generation	None	Extended
BP	GO:0007283	spermatogenesis	IEA	AHRD
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008406	gonad development	None	Extended
BP	GO:0008584	male gonad development	IEA	AHRD
BP	GO:0009755	hormone-mediated signaling pathway	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016570	histone modification	IEA	AHRD
MF	GO:0016922	nuclear receptor binding	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	IEA	AHRD
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
MF	GO:0032451	demethylase activity	None	Extended
MF	GO:0032452	histone demethylase activity	None	Extended
MF	GO:0032454	histone H3-methyl-lysine-9 demethylase activity	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0048232	male gamete generation	None	Extended
BP	GO:0048468	cell development	IEA	AHRD
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	IEA	AHRD
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEA	AHRD
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	IEA	AHRD
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060969	obsolete negative regulation of gene silencing	IEA	AHRD
MF	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098727	maintenance of cell number	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:0140297	DNA-binding transcription factor binding	None	Extended
MF	GO:0140457	protein demethylase activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000175	3'-5'-exoribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0000287	magnesium ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predict GO terms from Neighborhoods
CC	GO:0000932	P-body	IEP	Predict GO terms from Neighborhoods
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0001221	transcription coregulator binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001222	transcription corepressor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001666	response to hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0001829	trophectodermal cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0003032	detection of oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004532	exoribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004535	poly(A)-specific ribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004737	pyruvate decarboxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005154	epidermal growth factor receptor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005506	iron ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005829	cytosol	IEP	Predict GO terms from Neighborhoods
CC	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005849	mRNA cleavage factor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Predict GO terms from Neighborhoods
BP	GO:0006378	mRNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006401	RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006402	mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006528	asparagine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006529	asparagine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006541	glutamine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007548	sex differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009061	anaerobic respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009593	detection of chemical stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009968	negative regulation of signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0010555	response to mannitol	IEP	Predict GO terms from Neighborhoods
BP	GO:0010603	regulation of cytoplasmic mRNA processing body assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010648	negative regulation of cell communication	IEP	Predict GO terms from Neighborhoods
BP	GO:0010721	negative regulation of cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010977	negative regulation of neuron projection development	IEP	Predict GO terms from Neighborhoods
BP	GO:0015074	DNA integration	IEP	Predict GO terms from Neighborhoods
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Predict GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016074	sno(s)RNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016157	sucrose synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
BP	GO:0018158	protein oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018171	peptidyl-cysteine oxidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018198	peptidyl-cysteine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0019221	cytokine-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0019439	aromatic compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0023057	negative regulation of signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0030015	CCR4-NOT core complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0030374	nuclear receptor coactivator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030516	regulation of axon extension	IEP	Predict GO terms from Neighborhoods
BP	GO:0030517	negative regulation of axon extension	IEP	Predict GO terms from Neighborhoods
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031124	mRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031126	sno(s)RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031345	negative regulation of cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031440	regulation of mRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0033135	regulation of peptidyl-serine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033138	positive regulation of peptidyl-serine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033143	regulation of intracellular steroid hormone receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033144	negative regulation of intracellular steroid hormone receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033146	regulation of intracellular estrogen receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033147	negative regulation of intracellular estrogen receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0033620	Mei2 nuclear dot complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033621	nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts	IEP	Predict GO terms from Neighborhoods
BP	GO:0034059	response to anoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0035770	ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0036293	response to decreased oxygen levels	IEP	Predict GO terms from Neighborhoods
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0042058	regulation of epidermal growth factor receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0042273	ribosomal large subunit biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042710	biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043122	regulation of I-kappaB kinase/NF-kappaB signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0043144	sno(s)RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0043628	small regulatory ncRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0043629	ncRNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043631	RNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044010	single-species biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044011	single-species biofilm formation on inanimate substrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045333	cellular respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0045742	positive regulation of epidermal growth factor receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0046700	heterocycle catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048449	floral organ formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048451	petal formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048585	negative regulation of response to stimulus	IEP	Predict GO terms from Neighborhoods
CC	GO:0048786	presynaptic active zone	IEP	Predict GO terms from Neighborhoods
BP	GO:0050768	negative regulation of neurogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050770	regulation of axonogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050771	negative regulation of axonogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0050997	quaternary ammonium group binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051213	dioxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051606	detection of stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051961	negative regulation of nervous system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051963	regulation of synapse assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051965	positive regulation of synapse assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0061387	regulation of extent of cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0070482	response to oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0070483	detection of hypoxia	IEP	Predict GO terms from Neighborhoods
MF	GO:0070566	adenylyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070851	growth factor receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070981	L-asparagine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070982	L-asparagine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071050	sno(s)RNA polyadenylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090092	regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090101	negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090605	submerged biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090609	single-species submerged biofilm formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0098630	aggregation of unicellular organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0098743	cell aggregation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901184	regulation of ERBB signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1901186	positive regulation of ERBB signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901888	regulation of cell junction assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1901890	positive regulation of cell junction assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902117	positive regulation of organelle assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:1990251	nuclear exosome focus	IEP	Predict GO terms from Neighborhoods
BP	GO:2000036	regulation of stem cell population maintenance	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003347	JmjC_dom	1156	1259
IPR018866	Znf-4CXXC_R1	619	688

External Links

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SOLTUB.AGRIA.G00000007693

Expression Profile

Co-expression Networks

Functional Annotation