SOLTUB.AGRIA.G00000007879

Description : DNA mismatch repair protein mutL

Gene families : OG_02_0003782 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000007879
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_118

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	AHRD
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0007131	reciprocal meiotic recombination	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031974	membrane-enclosed lumen	None	Extended
CC	GO:0031981	nuclear lumen	IEA	AHRD
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0043233	organelle lumen	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
CC	GO:0070013	intracellular organelle lumen	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000018	regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0000278	mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0000408	EKC/KEOPS complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000429	carbon catabolite regulation of transcription from RNA polymerase II promoter	IEP	Predict GO terms from Neighborhoods
BP	GO:0000436	carbon catabolite activation of transcription from RNA polymerase II promoter	IEP	Predict GO terms from Neighborhoods
MF	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	IEP	Predict GO terms from Neighborhoods
BP	GO:0001525	angiogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0002039	p53 binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0002230	positive regulation of defense response to virus by host	IEP	Predict GO terms from Neighborhoods
MF	GO:0003678	DNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004061	arylformamidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004520	endodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004536	deoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005662	DNA replication factor A complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006004	fucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen	IEP	Predict GO terms from Neighborhoods
BP	GO:0006275	regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006298	mismatch repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Predict GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006338	chromatin remodeling	IEP	Predict GO terms from Neighborhoods
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006568	tryptophan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006569	tryptophan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006586	indolalkylamine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007155	cell adhesion	IEP	Predict GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0008156	negative regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0009060	aerobic respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010099	regulation of photomorphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010112	regulation of systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010171	body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010172	embryonic body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	Predict GO terms from Neighborhoods
CC	GO:0010369	chromocenter	IEP	Predict GO terms from Neighborhoods
BP	GO:0010395	rhamnogalacturonan I metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010677	negative regulation of cellular carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016602	CCAAT-binding factor complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predict GO terms from Neighborhoods
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	Predict GO terms from Neighborhoods
BP	GO:0019646	aerobic electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0022904	respiratory electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0030097	hemopoiesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0030983	mismatched DNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031010	ISWI-type complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031048	small non-coding RNA-dependent heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031297	replication fork processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031507	heterochromatin formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0031593	polyubiquitin modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031670	cellular response to nutrient	IEP	Predict GO terms from Neighborhoods
BP	GO:0031935	obsolete regulation of chromatin silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0032042	mitochondrial DNA metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0032300	mismatch repair complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Predict GO terms from Neighborhoods
BP	GO:0034052	positive regulation of plant-type hypersensitive response	IEP	Predict GO terms from Neighborhoods
BP	GO:0035694	mitochondrial protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0035861	site of double-strand break	IEP	Predict GO terms from Neighborhoods
BP	GO:0036292	DNA rewinding	IEP	Predict GO terms from Neighborhoods
MF	GO:0036310	ATP-dependent DNA/DNA annealing activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042436	indole-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043067	regulation of programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0043457	regulation of cellular respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0044030	regulation of DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045005	DNA-templated DNA replication maintenance of fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045333	cellular respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	Predict GO terms from Neighborhoods
BP	GO:0045910	negative regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0045912	negative regulation of carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045990	carbon catabolite regulation of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045991	carbon catabolite activation of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0048478	replication fork protection	IEP	Predict GO terms from Neighborhoods
BP	GO:0048534	hematopoietic or lymphoid organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048579	negative regulation of long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0050688	regulation of defense response to virus	IEP	Predict GO terms from Neighborhoods
BP	GO:0050691	regulation of defense response to virus by host	IEP	Predict GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051216	cartilage development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0052325	cell wall pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052546	cell wall pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070189	kynurenine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0070530	K63-linked polyubiquitin modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0070828	heterochromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Predict GO terms from Neighborhoods
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090329	regulation of DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0090734	site of DNA damage	IEP	Predict GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Predict GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140666	annealing activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140718	facultative heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901672	positive regulation of systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:1902288	regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
BP	GO:1902290	positive regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
CC	GO:1904949	ATPase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:1990814	DNA/DNA annealing activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1990918	double-strand break repair involved in meiotic recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:2000104	negative regulation of DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:2000306	positive regulation of photomorphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000904	regulation of starch metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000905	negative regulation of starch metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013507	DNA_mismatch_S5_2-like	299	378
IPR020568	Ribosomal_S5_D2-typ_fold	298	380
IPR037198	MutL_C_sf	1022	1214
IPR036890	HATPase_C_sf	20	197
IPR014790	MutL_C	1022	1183

External Links

No external refs found!

SOLTUB.AGRIA.G00000007879

Expression Profile

Co-expression Networks

Functional Annotation