SOLTUB.AGRIA.G00000008275

Description : ATP-dependent Clp protease proteolytic subunit

Gene families : OG_02_0008128 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000008275
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_150

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004176	ATP-dependent peptidase activity	IEA	AHRD
MF	GO:0004252	serine-type endopeptidase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008236	serine-type peptidase activity	None	Extended
CC	GO:0009368	endopeptidase Clp complex	None	Extended
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009840	chloroplastic endopeptidase Clp complex	IEA	AHRD
CC	GO:0009941	chloroplast envelope	IEA	AHRD
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017171	serine hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0051117	ATPase binding	IEA	AHRD
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0001654	eye development	IEP	Predict GO terms from Neighborhoods
BP	GO:0003007	heart morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004222	metalloendopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005506	iron ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005622	intracellular anatomical structure	IEP	Predict GO terms from Neighborhoods
BP	GO:0006020	inositol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006555	methionine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006662	glycerol ether metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006790	sulfur compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007519	skeletal muscle tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0008203	cholesterol metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008235	metalloexopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008238	exopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009376	HslUV protease complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0009399	nitrogen fixation	IEP	Predict GO terms from Neighborhoods
CC	GO:0009532	plastid stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009534	chloroplast thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009570	chloroplast stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009657	plastid organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009658	chloroplast organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009668	plastid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009822	alkaloid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010027	thylakoid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010190	cytochrome b6f complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010239	chloroplast mRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0016151	nickel cation binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	Predict GO terms from Neighborhoods
BP	GO:0017004	cytochrome complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0018206	peptidyl-methionine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0019310	inositol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0021515	cell differentiation in spinal cord	IEP	Predict GO terms from Neighborhoods
BP	GO:0021517	ventral spinal cord development	IEP	Predict GO terms from Neighborhoods
BP	GO:0021953	central nervous system neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0030016	myofibril	IEP	Predict GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030239	myofibril assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0030902	hindbrain development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031032	actomyosin structure organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0031365	N-terminal protein amino acid modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0031597	cytosolic proteasome complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031976	plastid thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0032088	negative regulation of NF-kappaB transcription factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032790	ribosome disassembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0034357	photosynthetic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0035551	protein initiator methionine removal involved in protein maturation	IEP	Predict GO terms from Neighborhoods
CC	GO:0042170	plastid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0042220	response to cocaine	IEP	Predict GO terms from Neighborhoods
CC	GO:0042651	thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0043010	camera-type eye development	IEP	Predict GO terms from Neighborhoods
MF	GO:0043023	ribosomal large subunit binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043292	contractile fiber	IEP	Predict GO terms from Neighborhoods
BP	GO:0043516	regulation of DNA damage response, signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:0045036	protein targeting to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0046174	polyol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0047590	5-dehydro-2-deoxygluconokinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048066	developmental pigmentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048514	blood vessel morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048564	photosystem I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0048665	neuron fate specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0048880	sensory system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048881	mechanosensory lateral line system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048882	lateral line development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048925	lateral line system development	IEP	Predict GO terms from Neighborhoods
MF	GO:0051536	iron-sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051540	metal cluster binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051604	protein maturation	IEP	Predict GO terms from Neighborhoods
CC	GO:0055035	plastid thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0060537	muscle tissue development	IEP	Predict GO terms from Neighborhoods
MF	GO:0070006	metalloaminopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070084	protein initiator methionine removal	IEP	Predict GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0072344	rescue of stalled ribosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0072598	protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
MF	GO:0097216	guanosine tetraphosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0097428	protein maturation by iron-sulfur cluster transfer	IEP	Predict GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1905369	endopeptidase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1990229	iron-sulfur cluster assembly complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR023562	ClpP/TepA	80	253
IPR029045	ClpP/crotonase-like_dom_sf	79	254

External Links

No external refs found!

SOLTUB.AGRIA.G00000008275

Expression Profile

Co-expression Networks

Functional Annotation