Description : 60S acidic ribosomal P2
Gene families : OG_02_0001724 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000000845 | |
Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_128 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0002182 | cytoplasmic translational elongation | IEA | AHRD |
MF | GO:0003729 | mRNA binding | IEA | AHRD |
MF | GO:0003735 | structural constituent of ribosome | IEA | AHRD |
MF | GO:0005506 | iron ion binding | IEA | AHRD |
CC | GO:0005730 | nucleolus | IEA | AHRD |
CC | GO:0005886 | plasma membrane | IEA | AHRD |
BP | GO:0009409 | response to cold | IEA | AHRD |
CC | GO:0009507 | chloroplast | IEA | AHRD |
CC | GO:0022625 | cytosolic large ribosomal subunit | IEA | AHRD |
CC | GO:0042788 | polysomal ribosome | IEA | AHRD |
MF | GO:0042802 | identical protein binding | IEA | AHRD |
MF | GO:0043021 | ribonucleoprotein complex binding | IEA | AHRD |
CC | GO:0045202 | synapse | IEA | AHRD |
BP | GO:0045727 | positive regulation of translation | IEA | AHRD |
BP | GO:0051260 | protein homooligomerization | IEA | AHRD |
BP | GO:0051291 | protein heterooligomerization | IEA | AHRD |
BP | GO:0071320 | cellular response to cAMP | IEA | AHRD |
BP | GO:1904401 | cellular response to Thyroid stimulating hormone | IEA | AHRD |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000027 | ribosomal large subunit assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000028 | ribosomal small subunit assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000154 | rRNA modification | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000245 | spliceosomal complex assembly | IEP | Predict GO terms from Neighborhoods |
CC | GO:0000418 | RNA polymerase IV complex | IEP | Predict GO terms from Neighborhoods |
CC | GO:0000419 | RNA polymerase V complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000448 | cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000454 | snoRNA guided rRNA pseudouridine synthesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000463 | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000469 | cleavage involved in rRNA processing | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000470 | maturation of LSU-rRNA | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000478 | endonucleolytic cleavage involved in rRNA processing | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000479 | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000491 | small nucleolar ribonucleoprotein complex assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000493 | box H/ACA snoRNP assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000723 | telomere maintenance | IEP | Predict GO terms from Neighborhoods |
BP | GO:0000741 | karyogamy | IEP | Predict GO terms from Neighborhoods |
CC | GO:0000786 | nucleosome | IEP | Predict GO terms from Neighborhoods |
BP | GO:0001192 | maintenance of transcriptional fidelity during transcription elongation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0001193 | maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II | IEP | Predict GO terms from Neighborhoods |
MF | GO:0001221 | transcription coregulator binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0001223 | transcription coactivator binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0001522 | pseudouridine synthesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0001889 | liver development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0002181 | cytoplasmic translation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0002227 | innate immune response in mucosa | IEP | Predict GO terms from Neighborhoods |
BP | GO:0002251 | organ or tissue specific immune response | IEP | Predict GO terms from Neighborhoods |
BP | GO:0002262 | myeloid cell homeostasis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0002385 | mucosal immune response | IEP | Predict GO terms from Neighborhoods |
MF | GO:0003968 | RNA-directed 5'-3' RNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0004857 | enzyme inhibitor activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0005539 | glycosaminoglycan binding | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005618 | cell wall | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005654 | nucleoplasm | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005665 | RNA polymerase II, core complex | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005686 | U2 snRNP | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005689 | U12-type spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005697 | telomerase holoenzyme complex | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005774 | vacuolar membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0005911 | cell-cell junction | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006259 | DNA metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006278 | RNA-templated DNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006283 | transcription-coupled nucleotide-excision repair | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006325 | chromatin organization | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006334 | nucleosome assembly | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006338 | chromatin remodeling | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006364 | rRNA processing | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006367 | transcription initiation at RNA polymerase II promoter | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006379 | mRNA cleavage | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006396 | RNA processing | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006407 | rRNA export from nucleus | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006412 | translation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006448 | regulation of translational elongation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006450 | regulation of translational fidelity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006518 | peptide metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006914 | autophagy | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006959 | humoral immune response | IEP | Predict GO terms from Neighborhoods |
BP | GO:0006997 | nucleus organization | IEP | Predict GO terms from Neighborhoods |
BP | GO:0007004 | telomere maintenance via telomerase | IEP | Predict GO terms from Neighborhoods |
BP | GO:0007411 | axon guidance | IEP | Predict GO terms from Neighborhoods |
BP | GO:0007566 | embryo implantation | IEP | Predict GO terms from Neighborhoods |
MF | GO:0008201 | heparin binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0008270 | zinc ion binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0008380 | RNA splicing | IEP | Predict GO terms from Neighborhoods |
BP | GO:0009410 | response to xenobiotic stimulus | IEP | Predict GO terms from Neighborhoods |
CC | GO:0009506 | plasmodesma | IEP | Predict GO terms from Neighborhoods |
CC | GO:0009534 | chloroplast thylakoid | IEP | Predict GO terms from Neighborhoods |
CC | GO:0009579 | thylakoid | IEP | Predict GO terms from Neighborhoods |
BP | GO:0009792 | embryo development ending in birth or egg hatching | IEP | Predict GO terms from Neighborhoods |
BP | GO:0009955 | adaxial/abaxial pattern specification | IEP | Predict GO terms from Neighborhoods |
BP | GO:0009965 | leaf morphogenesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0010197 | polar nucleus fusion | IEP | Predict GO terms from Neighborhoods |
BP | GO:0010458 | exit from mitosis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0010833 | telomere maintenance via telomere lengthening | IEP | Predict GO terms from Neighborhoods |
CC | GO:0014069 | postsynaptic density | IEP | Predict GO terms from Neighborhoods |
CC | GO:0015935 | small ribosomal subunit | IEP | Predict GO terms from Neighborhoods |
BP | GO:0016070 | RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0016072 | rRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0016073 | snRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0016236 | macroautophagy | IEP | Predict GO terms from Neighborhoods |
BP | GO:0017085 | response to insecticide | IEP | Predict GO terms from Neighborhoods |
BP | GO:0019538 | protein metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0019730 | antimicrobial humoral response | IEP | Predict GO terms from Neighborhoods |
BP | GO:0019731 | antibacterial humoral response | IEP | Predict GO terms from Neighborhoods |
MF | GO:0019838 | growth factor binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0019843 | rRNA binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0021545 | cranial nerve development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0021554 | optic nerve development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0021675 | nerve development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Predict GO terms from Neighborhoods |
CC | GO:0022627 | cytosolic small ribosomal subunit | IEP | Predict GO terms from Neighborhoods |
BP | GO:0030218 | erythrocyte differentiation | IEP | Predict GO terms from Neighborhoods |
MF | GO:0030234 | enzyme regulator activity | IEP | Predict GO terms from Neighborhoods |
CC | GO:0030312 | external encapsulating structure | IEP | Predict GO terms from Neighborhoods |
MF | GO:0030515 | snoRNA binding | IEP | Predict GO terms from Neighborhoods |
CC | GO:0030684 | preribosome | IEP | Predict GO terms from Neighborhoods |
CC | GO:0030687 | preribosome, large subunit precursor | IEP | Predict GO terms from Neighborhoods |
BP | GO:0031099 | regeneration | IEP | Predict GO terms from Neighborhoods |
BP | GO:0031100 | animal organ regeneration | IEP | Predict GO terms from Neighborhoods |
BP | GO:0031118 | rRNA pseudouridine synthesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0031120 | snRNA pseudouridine synthesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0031290 | retinal ganglion cell axon guidance | IEP | Predict GO terms from Neighborhoods |
MF | GO:0031386 | protein tag | IEP | Predict GO terms from Neighborhoods |
CC | GO:0031429 | box H/ACA snoRNP complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0031589 | cell-substrate adhesion | IEP | Predict GO terms from Neighborhoods |
CC | GO:0031976 | plastid thylakoid | IEP | Predict GO terms from Neighborhoods |
BP | GO:0032200 | telomere organization | IEP | Predict GO terms from Neighborhoods |
BP | GO:0032526 | response to retinoic acid | IEP | Predict GO terms from Neighborhoods |
BP | GO:0032986 | protein-DNA complex disassembly | IEP | Predict GO terms from Neighborhoods |
CC | GO:0032993 | protein-DNA complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0033119 | negative regulation of RNA splicing | IEP | Predict GO terms from Neighborhoods |
BP | GO:0034101 | erythrocyte homeostasis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0034198 | cellular response to amino acid starvation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0034470 | ncRNA processing | IEP | Predict GO terms from Neighborhoods |
MF | GO:0034513 | box H/ACA snoRNA binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0034728 | nucleosome organization | IEP | Predict GO terms from Neighborhoods |
BP | GO:0035162 | embryonic hemopoiesis | IEP | Predict GO terms from Neighborhoods |
MF | GO:0035368 | selenocysteine insertion sequence binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0040031 | snRNA modification | IEP | Predict GO terms from Neighborhoods |
BP | GO:0042273 | ribosomal large subunit biogenesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043009 | chordate embryonic development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043043 | peptide biosynthetic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043603 | cellular amide metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0043604 | amide biosynthetic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0044085 | cellular component biogenesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0044238 | primary metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predict GO terms from Neighborhoods |
CC | GO:0044815 | DNA packaging complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0045292 | mRNA cis splicing, via spliceosome | IEP | Predict GO terms from Neighborhoods |
BP | GO:0045901 | positive regulation of translational elongation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0046677 | response to antibiotic | IEP | Predict GO terms from Neighborhoods |
BP | GO:0046898 | response to cycloheximide | IEP | Predict GO terms from Neighborhoods |
MF | GO:0046982 | protein heterodimerization activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048284 | organelle fusion | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048513 | animal organ development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048732 | gland development | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048863 | stem cell differentiation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0048872 | homeostasis of number of cells | IEP | Predict GO terms from Neighborhoods |
BP | GO:0050830 | defense response to Gram-positive bacterium | IEP | Predict GO terms from Neighborhoods |
BP | GO:0051029 | rRNA transport | IEP | Predict GO terms from Neighborhoods |
BP | GO:0051444 | negative regulation of ubiquitin-protein transferase activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0051726 | regulation of cell cycle | IEP | Predict GO terms from Neighborhoods |
MF | GO:0055105 | ubiquitin-protein transferase inhibitor activity | IEP | Predict GO terms from Neighborhoods |
MF | GO:0055106 | ubiquitin-protein transferase regulator activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:0060041 | retina development in camera-type eye | IEP | Predict GO terms from Neighborhoods |
BP | GO:0060215 | primitive hemopoiesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0061844 | antimicrobial humoral immune response mediated by antimicrobial peptide | IEP | Predict GO terms from Neighborhoods |
BP | GO:0061919 | process utilizing autophagic mechanism | IEP | Predict GO terms from Neighborhoods |
BP | GO:0065004 | protein-DNA complex assembly | IEP | Predict GO terms from Neighborhoods |
MF | GO:0070034 | telomerase RNA binding | IEP | Predict GO terms from Neighborhoods |
CC | GO:0070161 | anchoring junction | IEP | Predict GO terms from Neighborhoods |
MF | GO:0070180 | large ribosomal subunit rRNA binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:0070181 | small ribosomal subunit rRNA binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0071236 | cellular response to antibiotic | IEP | Predict GO terms from Neighborhoods |
BP | GO:0071493 | cellular response to UV-B | IEP | Predict GO terms from Neighborhoods |
BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predict GO terms from Neighborhoods |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Predict GO terms from Neighborhoods |
BP | GO:0071897 | DNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
CC | GO:0072588 | box H/ACA RNP complex | IEP | Predict GO terms from Neighborhoods |
CC | GO:0072589 | box H/ACA scaRNP complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0072716 | response to actinomycin D | IEP | Predict GO terms from Neighborhoods |
BP | GO:0072717 | cellular response to actinomycin D | IEP | Predict GO terms from Neighborhoods |
BP | GO:0080188 | gene silencing by RNA-directed DNA methylation | IEP | Predict GO terms from Neighborhoods |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0090501 | RNA phosphodiester bond hydrolysis | IEP | Predict GO terms from Neighborhoods |
BP | GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic | IEP | Predict GO terms from Neighborhoods |
CC | GO:0090661 | box H/ACA telomerase RNP complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:0097064 | ncRNA export from nucleus | IEP | Predict GO terms from Neighborhoods |
MF | GO:0097371 | MDM2/MDM4 family protein binding | IEP | Predict GO terms from Neighborhoods |
BP | GO:0097421 | liver regeneration | IEP | Predict GO terms from Neighborhoods |
CC | GO:0098552 | side of membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0098554 | cytoplasmic side of endoplasmic reticulum membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0098556 | cytoplasmic side of rough endoplasmic reticulum membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0098562 | cytoplasmic side of membrane | IEP | Predict GO terms from Neighborhoods |
CC | GO:0098588 | bounding membrane of organelle | IEP | Predict GO terms from Neighborhoods |
CC | GO:0099572 | postsynaptic specialization | IEP | Predict GO terms from Neighborhoods |
CC | GO:0140513 | nuclear protein-containing complex | IEP | Predict GO terms from Neighborhoods |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predict GO terms from Neighborhoods |
BP | GO:1901796 | regulation of signal transduction by p53 class mediator | IEP | Predict GO terms from Neighborhoods |
BP | GO:1901798 | positive regulation of signal transduction by p53 class mediator | IEP | Predict GO terms from Neighborhoods |
BP | GO:1902533 | positive regulation of intracellular signal transduction | IEP | Predict GO terms from Neighborhoods |
BP | GO:1904569 | regulation of selenocysteine incorporation | IEP | Predict GO terms from Neighborhoods |
BP | GO:1904571 | positive regulation of selenocysteine incorporation | IEP | Predict GO terms from Neighborhoods |
BP | GO:1904666 | regulation of ubiquitin protein ligase activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:1904667 | negative regulation of ubiquitin protein ligase activity | IEP | Predict GO terms from Neighborhoods |
BP | GO:1905392 | plant organ morphogenesis | IEP | Predict GO terms from Neighborhoods |
BP | GO:1990928 | response to amino acid starvation | IEP | Predict GO terms from Neighborhoods |
MF | GO:1990932 | 5.8S rRNA binding | IEP | Predict GO terms from Neighborhoods |
MF | GO:1990948 | ubiquitin ligase inhibitor activity | IEP | Predict GO terms from Neighborhoods |
No InterPro domains available for this sequence
No external refs found! |