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  5. SOLTUB.AGRIA.G00000009559

SOLTUB.AGRIA.G00000009559


Description : High mobility group protein


Gene families : OG_02_0008294 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000009559
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_200


Type GO Term Name Evidence Source
CC GO:0000785 chromatin IEA AHRD
MF GO:0000976 transcription cis-regulatory region binding IEA AHRD
MF GO:0003682 chromatin binding IEA AHRD
MF GO:0003700 DNA-binding transcription factor activity IEA AHRD
CC GO:0005634 nucleus IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0006355 regulation of DNA-templated transcription IEA AHRD
MF GO:0030527 structural constituent of chromatin IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP Predict GO terms from Neighborhoods
MF GO:0000149 SNARE binding IEP Predict GO terms from Neighborhoods
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predict GO terms from Neighborhoods
CC GO:0000228 nuclear chromosome IEP Predict GO terms from Neighborhoods
CC GO:0000776 kinetochore IEP Predict GO terms from Neighborhoods
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0001505 regulation of neurotransmitter levels IEP Predict GO terms from Neighborhoods
BP GO:0002084 protein depalmitoylation IEP Predict GO terms from Neighborhoods
MF GO:0005515 protein binding IEP Predict GO terms from Neighborhoods
BP GO:0006887 exocytosis IEP Predict GO terms from Neighborhoods
BP GO:0007611 learning or memory IEP Predict GO terms from Neighborhoods
BP GO:0007612 learning IEP Predict GO terms from Neighborhoods
BP GO:0008285 negative regulation of cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0008306 associative learning IEP Predict GO terms from Neighborhoods
MF GO:0008474 palmitoyl-(protein) hydrolase activity IEP Predict GO terms from Neighborhoods
CC GO:0009511 plasmodesmatal endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0009624 response to nematode IEP Predict GO terms from Neighborhoods
BP GO:0009739 response to gibberellin IEP Predict GO terms from Neighborhoods
BP GO:0009791 post-embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0009891 positive regulation of biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009901 anther dehiscence IEP Predict GO terms from Neighborhoods
BP GO:0009955 adaxial/abaxial pattern specification IEP Predict GO terms from Neighborhoods
CC GO:0010008 endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0010022 meristem determinacy IEP Predict GO terms from Neighborhoods
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010582 floral meristem determinacy IEP Predict GO terms from Neighborhoods
BP GO:0010770 positive regulation of cell morphogenesis involved in differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010807 regulation of synaptic vesicle priming IEP Predict GO terms from Neighborhoods
BP GO:0010930 negative regulation of auxin mediated signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0012506 vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0016143 S-glycoside metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0016514 SWI/SNF complex IEP Predict GO terms from Neighborhoods
CC GO:0016604 nuclear body IEP Predict GO terms from Neighborhoods
MF GO:0016790 thiolester hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0017156 calcium-ion regulated exocytosis IEP Predict GO terms from Neighborhoods
BP GO:0019757 glycosinolate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019760 glucosinolate metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0019905 syntaxin binding IEP Predict GO terms from Neighborhoods
BP GO:0019953 sexual reproduction IEP Predict GO terms from Neighborhoods
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0030374 nuclear receptor coactivator activity IEP Predict GO terms from Neighborhoods
CC GO:0030659 cytoplasmic vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0030912 response to deep water IEP Predict GO terms from Neighborhoods
BP GO:0031137 regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0031138 negative regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
CC GO:0031302 intrinsic component of endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0031344 regulation of cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0033045 regulation of sister chromatid segregation IEP Predict GO terms from Neighborhoods
CC GO:0033620 Mei2 nuclear dot complex IEP Predict GO terms from Neighborhoods
CC GO:0034064 Tor2-Mei2-Ste11 complex IEP Predict GO terms from Neighborhoods
BP GO:0035601 protein deacylation IEP Predict GO terms from Neighborhoods
BP GO:0040020 regulation of meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0042127 regulation of cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0042157 lipoprotein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042159 lipoprotein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042595 behavioral response to starvation IEP Predict GO terms from Neighborhoods
CC GO:0043679 axon terminus IEP Predict GO terms from Neighborhoods
CC GO:0044306 neuron projection terminus IEP Predict GO terms from Neighborhoods
BP GO:0045055 regulated exocytosis IEP Predict GO terms from Neighborhoods
CC GO:0045202 synapse IEP Predict GO terms from Neighborhoods
BP GO:0045836 positive regulation of meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0045893 positive regulation of DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046928 regulation of neurotransmitter secretion IEP Predict GO terms from Neighborhoods
BP GO:0048167 regulation of synaptic plasticity IEP Predict GO terms from Neighborhoods
BP GO:0048316 seed development IEP Predict GO terms from Neighborhoods
BP GO:0048366 leaf development IEP Predict GO terms from Neighborhoods
BP GO:0048518 positive regulation of biological process IEP Predict GO terms from Neighborhoods
BP GO:0048519 negative regulation of biological process IEP Predict GO terms from Neighborhoods
BP GO:0048522 positive regulation of cellular process IEP Predict GO terms from Neighborhoods
BP GO:0048523 negative regulation of cellular process IEP Predict GO terms from Neighborhoods
BP GO:0048578 positive regulation of long-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048580 regulation of post-embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0048658 anther wall tapetum development IEP Predict GO terms from Neighborhoods
CC GO:0048786 presynaptic active zone IEP Predict GO terms from Neighborhoods
BP GO:0048814 regulation of dendrite morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048827 phyllome development IEP Predict GO terms from Neighborhoods
BP GO:0050769 positive regulation of neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050773 regulation of dendrite development IEP Predict GO terms from Neighborhoods
BP GO:0050775 positive regulation of dendrite morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050793 regulation of developmental process IEP Predict GO terms from Neighborhoods
BP GO:0050795 regulation of behavior IEP Predict GO terms from Neighborhoods
BP GO:0050806 positive regulation of synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0050807 regulation of synapse organization IEP Predict GO terms from Neighborhoods
BP GO:0051047 positive regulation of secretion IEP Predict GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0051130 positive regulation of cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0051239 regulation of multicellular organismal process IEP Predict GO terms from Neighborhoods
BP GO:0051240 positive regulation of multicellular organismal process IEP Predict GO terms from Neighborhoods
BP GO:0051254 positive regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051445 regulation of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051446 positive regulation of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051588 regulation of neurotransmitter transport IEP Predict GO terms from Neighborhoods
BP GO:0051665 membrane raft localization IEP Predict GO terms from Neighborhoods
BP GO:0051785 positive regulation of nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0051962 positive regulation of nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0051983 regulation of chromosome segregation IEP Predict GO terms from Neighborhoods
CC GO:0055038 recycling endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0060076 excitatory synapse IEP Predict GO terms from Neighborhoods
BP GO:0061062 regulation of nematode larval development IEP Predict GO terms from Neighborhoods
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predict GO terms from Neighborhoods
CC GO:0071565 nBAF complex IEP Predict GO terms from Neighborhoods
CC GO:0071683 sensory dendrite IEP Predict GO terms from Neighborhoods
CC GO:0097060 synaptic membrane IEP Predict GO terms from Neighborhoods
MF GO:0098599 palmitoyl hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0098732 macromolecule deacylation IEP Predict GO terms from Neighborhoods
BP GO:0098734 macromolecule depalmitoylation IEP Predict GO terms from Neighborhoods
CC GO:0098793 presynapse IEP Predict GO terms from Neighborhoods
CC GO:0098936 intrinsic component of postsynaptic membrane IEP Predict GO terms from Neighborhoods
CC GO:0098948 intrinsic component of postsynaptic specialization membrane IEP Predict GO terms from Neighborhoods
CC GO:0098949 intrinsic component of postsynaptic endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0098951 intrinsic component of postsynaptic recycling endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0099011 neuronal dense core vesicle exocytosis IEP Predict GO terms from Neighborhoods
CC GO:0099025 anchored component of postsynaptic membrane IEP Predict GO terms from Neighborhoods
CC GO:0099030 anchored component of postsynaptic specialization membrane IEP Predict GO terms from Neighborhoods
CC GO:0099031 anchored component of postsynaptic density membrane IEP Predict GO terms from Neighborhoods
CC GO:0099033 anchored component of postsynaptic recycling endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0099034 anchored component of postsynaptic endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0099144 anchored component of synaptic membrane IEP Predict GO terms from Neighborhoods
CC GO:0099146 intrinsic component of postsynaptic density membrane IEP Predict GO terms from Neighborhoods
BP GO:0099175 regulation of postsynapse organization IEP Predict GO terms from Neighborhoods
CC GO:0099240 intrinsic component of synaptic membrane IEP Predict GO terms from Neighborhoods
BP GO:0099402 plant organ development IEP Predict GO terms from Neighborhoods
BP GO:0110046 signal transduction involved in cell cycle switching, mitotic to meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0120035 regulation of plasma membrane bounded cell projection organization IEP Predict GO terms from Neighborhoods
MF GO:0140311 protein sequestering activity IEP Predict GO terms from Neighborhoods
MF GO:0140313 molecular sequestering activity IEP Predict GO terms from Neighborhoods
BP GO:0140538 negative regulation of conjugation with zygote IEP Predict GO terms from Neighborhoods
BP GO:1901657 glycosyl compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901993 regulation of meiotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901995 positive regulation of meiotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902101 positive regulation of metaphase/anaphase transition of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902102 regulation of metaphase/anaphase transition of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902104 positive regulation of metaphase/anaphase transition of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902182 shoot apical meristem development IEP Predict GO terms from Neighborhoods
BP GO:1902473 regulation of protein localization to synapse IEP Predict GO terms from Neighborhoods
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902816 regulation of protein localization to microtubule IEP Predict GO terms from Neighborhoods
BP GO:1902817 negative regulation of protein localization to microtubule IEP Predict GO terms from Neighborhoods
BP GO:1902950 regulation of dendritic spine maintenance IEP Predict GO terms from Neighborhoods
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:1903532 positive regulation of secretion by cell IEP Predict GO terms from Neighborhoods
BP GO:1903828 negative regulation of protein localization IEP Predict GO terms from Neighborhoods
CC GO:1904949 ATPase complex IEP Predict GO terms from Neighborhoods
BP GO:1905132 regulation of meiotic chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905134 positive regulation of meiotic chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905189 regulation of metaphase/anaphase transition of meiosis II IEP Predict GO terms from Neighborhoods
BP GO:1905191 positive regulation of metaphase/anaphase transition of meiosis II IEP Predict GO terms from Neighborhoods
BP GO:1905666 regulation of protein localization to endosome IEP Predict GO terms from Neighborhoods
BP GO:1905668 positive regulation of protein localization to endosome IEP Predict GO terms from Neighborhoods
BP GO:1905818 regulation of chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905820 positive regulation of chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1990504 dense core granule exocytosis IEP Predict GO terms from Neighborhoods
BP GO:2000026 regulation of multicellular organismal development IEP Predict GO terms from Neighborhoods
BP GO:2000243 positive regulation of reproductive process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR036910 HMG_box_dom_sf 326 370
IPR009071 HMG_box_dom 184 224
IPR009071 HMG_box_dom 337 372
IPR036910 HMG_box_dom_sf 183 225
IPR015300 DNA-bd_pseudobarrel_sf 5 100
IPR003340 B3_DNA-bd 21 96
No external refs found!