Coexpression cluster: Cluster_200 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0030912 response to deep water 9.21% (7/76) 8.01 0.0 0.0
GO:0061062 regulation of nematode larval development 10.53% (8/76) 6.68 0.0 0.0
GO:0048316 seed development 14.47% (11/76) 4.05 0.0 0.0
GO:0008285 negative regulation of cell population proliferation 13.16% (10/76) 3.99 0.0 0.0
GO:0009624 response to nematode 10.53% (8/76) 4.44 0.0 1e-06
GO:0048366 leaf development 13.16% (10/76) 3.34 0.0 1.2e-05
GO:0009739 response to gibberellin 11.84% (9/76) 3.55 0.0 1.4e-05
GO:0022414 reproductive process 43.42% (33/76) 1.3 0.0 2.3e-05
GO:0050793 regulation of developmental process 32.89% (25/76) 1.57 0.0 4.4e-05
GO:2000026 regulation of multicellular organismal development 22.37% (17/76) 2.02 1e-06 5.2e-05
GO:0099402 plant organ development 22.37% (17/76) 2.06 0.0 5.3e-05
GO:0016143 S-glycoside metabolic process 11.84% (9/76) 3.2 1e-06 5.6e-05
GO:0019757 glycosinolate metabolic process 11.84% (9/76) 3.2 1e-06 5.6e-05
GO:0019760 glucosinolate metabolic process 11.84% (9/76) 3.2 1e-06 5.6e-05
GO:0048856 anatomical structure development 44.74% (34/76) 1.17 1e-06 6.4e-05
GO:0048580 regulation of post-embryonic development 19.74% (15/76) 2.18 1e-06 6.7e-05
GO:0048608 reproductive structure development 17.11% (13/76) 2.46 1e-06 6.7e-05
GO:0048827 phyllome development 13.16% (10/76) 2.79 2e-06 0.000126
GO:0006790 sulfur compound metabolic process 15.79% (12/76) 2.44 2e-06 0.000129
GO:0043565 sequence-specific DNA binding 22.37% (17/76) 1.89 2e-06 0.000133
GO:0009791 post-embryonic development 21.05% (16/76) 1.95 3e-06 0.000158
GO:0003006 developmental process involved in reproduction 35.53% (27/76) 1.32 3e-06 0.000161
GO:0009900 dehiscence 7.89% (6/76) 3.91 3e-06 0.00017
GO:0000976 transcription cis-regulatory region binding 19.74% (15/76) 1.99 4e-06 0.000205
GO:0001067 transcription regulatory region nucleic acid binding 19.74% (15/76) 1.99 4e-06 0.000206
GO:0051173 positive regulation of nitrogen compound metabolic process 25.0% (19/76) 1.68 4e-06 0.000214
GO:1990837 sequence-specific double-stranded DNA binding 19.74% (15/76) 1.96 5e-06 0.000251
GO:1902182 shoot apical meristem development 3.95% (3/76) 6.34 7e-06 0.000301
GO:0009911 positive regulation of flower development 7.89% (6/76) 3.69 8e-06 0.000325
GO:0000082 G1/S transition of mitotic cell cycle 5.26% (4/76) 4.96 9e-06 0.000364
GO:1901657 glycosyl compound metabolic process 13.16% (10/76) 2.52 9e-06 0.000368
GO:0009511 plasmodesmatal endoplasmic reticulum 3.95% (3/76) 6.2 9e-06 0.000372
GO:0010604 positive regulation of macromolecule metabolic process 25.0% (19/76) 1.58 1.2e-05 0.00041
GO:0044843 cell cycle G1/S phase transition 5.26% (4/76) 4.86 1.2e-05 0.000417
GO:0045893 positive regulation of DNA-templated transcription 18.42% (14/76) 1.97 1.1e-05 0.000418
GO:1902680 positive regulation of RNA biosynthetic process 18.42% (14/76) 1.95 1.3e-05 0.000419
GO:1903508 positive regulation of nucleic acid-templated transcription 18.42% (14/76) 1.95 1.3e-05 0.000426
GO:0099011 neuronal dense core vesicle exocytosis 2.63% (2/76) 8.42 1.1e-05 0.000426
GO:0042127 regulation of cell population proliferation 13.16% (10/76) 2.46 1.4e-05 0.00044
GO:0003690 double-stranded DNA binding 19.74% (15/76) 1.84 1.4e-05 0.000445
GO:0048364 root development 14.47% (11/76) 2.28 1.5e-05 0.000474
GO:0009719 response to endogenous stimulus 30.26% (23/76) 1.33 1.8e-05 0.00054
GO:0009725 response to hormone 28.95% (22/76) 1.37 2.1e-05 0.000601
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 19.74% (15/76) 1.79 2.2e-05 0.000634
GO:0051239 regulation of multicellular organismal process 23.68% (18/76) 1.56 2.5e-05 0.000698
GO:0010218 response to far red light 6.58% (5/76) 3.78 3.3e-05 0.000911
GO:0031325 positive regulation of cellular metabolic process 23.68% (18/76) 1.52 3.7e-05 0.001001
GO:0051254 positive regulation of RNA metabolic process 18.42% (14/76) 1.8 3.9e-05 0.001024
GO:0048578 positive regulation of long-day photoperiodism, flowering 3.95% (3/76) 5.46 4.4e-05 0.001135
GO:0032502 developmental process 48.68% (37/76) 0.85 4.5e-05 0.001136
GO:0003677 DNA binding 23.68% (18/76) 1.49 4.8e-05 0.001194
GO:0048586 regulation of long-day photoperiodism, flowering 6.58% (5/76) 3.63 5.4e-05 0.001307
GO:1990504 dense core granule exocytosis 2.63% (2/76) 7.42 5.6e-05 0.001322
GO:0010930 negative regulation of auxin mediated signaling pathway 3.95% (3/76) 5.31 6.1e-05 0.00143
GO:0010557 positive regulation of macromolecule biosynthetic process 18.42% (14/76) 1.74 6.5e-05 0.001484
GO:2000028 regulation of photoperiodism, flowering 7.89% (6/76) 3.1 7.6e-05 0.001697
GO:0009893 positive regulation of metabolic process 25.0% (19/76) 1.37 8.2e-05 0.001814
GO:0033993 response to lipid 23.68% (18/76) 1.42 8.7e-05 0.001889
GO:0010807 regulation of synaptic vesicle priming 2.63% (2/76) 7.01 0.000104 0.002211
GO:0051777 ent-kaurenoate oxidase activity 2.63% (2/76) 6.84 0.000133 0.002745
GO:0060076 excitatory synapse 2.63% (2/76) 6.84 0.000133 0.002745
GO:0044772 mitotic cell cycle phase transition 5.26% (4/76) 3.91 0.000152 0.003091
GO:0048522 positive regulation of cellular process 30.26% (23/76) 1.13 0.000167 0.003342
GO:0010444 guard mother cell differentiation 3.95% (3/76) 4.78 0.000182 0.003574
GO:0044770 cell cycle phase transition 5.26% (4/76) 3.76 0.000227 0.00439
GO:0031328 positive regulation of cellular biosynthetic process 18.42% (14/76) 1.56 0.000236 0.004503
GO:0048786 presynaptic active zone 2.63% (2/76) 6.42 0.000243 0.004565
GO:0005575 cellular_component 80.26% (61/76) 0.4 0.000265 0.004897
GO:0009891 positive regulation of biosynthetic process 18.42% (14/76) 1.53 0.000282 0.005149
GO:0019748 secondary metabolic process 15.79% (12/76) 1.7 0.000289 0.005202
GO:0080167 response to karrikin 9.21% (7/76) 2.43 0.000328 0.005813
GO:2001141 regulation of RNA biosynthetic process 22.37% (17/76) 1.31 0.000365 0.005893
GO:1903506 regulation of nucleic acid-templated transcription 22.37% (17/76) 1.31 0.000363 0.00593
GO:0051252 regulation of RNA metabolic process 23.68% (18/76) 1.26 0.000363 0.006005
GO:0048582 positive regulation of post-embryonic development 7.89% (6/76) 2.66 0.000388 0.006024
GO:2000243 positive regulation of reproductive process 7.89% (6/76) 2.68 0.000359 0.006028
GO:0051171 regulation of nitrogen compound metabolic process 30.26% (23/76) 1.06 0.000356 0.006048
GO:0006355 regulation of DNA-templated transcription 22.37% (17/76) 1.31 0.000351 0.006051
GO:1903286 regulation of potassium ion import 2.63% (2/76) 6.1 0.000385 0.00606
GO:1903288 positive regulation of potassium ion import across plasma membrane 2.63% (2/76) 6.1 0.000385 0.00606
GO:0019219 regulation of nucleobase-containing compound metabolic process 25.0% (19/76) 1.22 0.000349 0.006095
GO:0010114 response to red light 6.58% (5/76) 2.99 0.000433 0.006645
GO:0060255 regulation of macromolecule metabolic process 31.58% (24/76) 1.0 0.00046 0.006969
GO:0048507 meristem development 5.26% (4/76) 3.47 0.000487 0.0073
GO:0043679 axon terminus 2.63% (2/76) 5.84 0.000559 0.008279
GO:0048523 negative regulation of cellular process 25.0% (19/76) 1.16 0.000572 0.008366
GO:0010033 response to organic substance 34.21% (26/76) 0.91 0.000623 0.009013
GO:1901135 carbohydrate derivative metabolic process 14.47% (11/76) 1.67 0.000636 0.009089
GO:1901700 response to oxygen-containing compound 31.58% (24/76) 0.95 0.000747 0.010557
GO:0080090 regulation of primary metabolic process 30.26% (23/76) 0.96 0.000901 0.012596
GO:0110165 cellular anatomical entity 77.63% (59/76) 0.37 0.000983 0.013593
GO:0044306 neuron projection terminus 2.63% (2/76) 5.36 0.001087 0.014867
GO:0048609 multicellular organismal reproductive process 10.53% (8/76) 1.94 0.001112 0.015042
GO:0010047 fruit dehiscence 3.95% (3/76) 3.85 0.001212 0.016226
GO:1901381 positive regulation of potassium ion transmembrane transport 2.63% (2/76) 5.2 0.001365 0.018072
GO:0017156 calcium-ion regulated exocytosis 2.63% (2/76) 5.15 0.001464 0.019185
GO:0050806 positive regulation of synaptic transmission 2.63% (2/76) 5.1 0.001567 0.020317
GO:0048518 positive regulation of biological process 31.58% (24/76) 0.87 0.001666 0.021381
GO:0005634 nucleus 27.63% (21/76) 0.96 0.001729 0.021969
GO:0003674 molecular_function 76.32% (58/76) 0.35 0.001787 0.02226
GO:0009409 response to cold 13.16% (10/76) 1.58 0.001774 0.022314
GO:0046928 regulation of neurotransmitter secretion 2.63% (2/76) 4.92 0.00201 0.024552
GO:0051588 regulation of neurotransmitter transport 2.63% (2/76) 4.92 0.00201 0.024552
GO:0009639 response to red or far red light 7.89% (6/76) 2.16 0.002274 0.027506
GO:0009909 regulation of flower development 7.89% (6/76) 2.16 0.002307 0.027639
GO:0010556 regulation of macromolecule biosynthetic process 22.37% (17/76) 1.07 0.002333 0.027691
GO:0043229 intracellular organelle 56.58% (43/76) 0.5 0.002442 0.028709
GO:0044281 small molecule metabolic process 21.05% (16/76) 1.1 0.002507 0.028939
GO:0009901 anther dehiscence 3.95% (3/76) 3.48 0.002507 0.029207
GO:0006082 organic acid metabolic process 17.11% (13/76) 1.25 0.002817 0.03136
GO:0090627 plant epidermal cell differentiation 5.26% (4/76) 2.78 0.002794 0.031387
GO:0050794 regulation of cellular process 44.74% (34/76) 0.62 0.002847 0.03142
GO:0019953 sexual reproduction 2.63% (2/76) 4.68 0.002774 0.031439
GO:0043226 organelle 56.58% (43/76) 0.49 0.002774 0.031722
GO:0032501 multicellular organismal process 31.58% (24/76) 0.81 0.002935 0.032111
GO:1900111 positive regulation of histone H3-K9 dimethylation 2.63% (2/76) 4.61 0.003054 0.033124
GO:0048831 regulation of shoot system development 7.89% (6/76) 2.07 0.003086 0.033179
GO:0005515 protein binding 53.95% (41/76) 0.51 0.003152 0.033607
GO:0009735 response to cytokinin 5.26% (4/76) 2.68 0.00356 0.037639
GO:0030247 polysaccharide binding 2.63% (2/76) 4.48 0.003653 0.03767
GO:1900109 regulation of histone H3-K9 dimethylation 2.63% (2/76) 4.48 0.003653 0.03767
GO:0043268 positive regulation of potassium ion transport 2.63% (2/76) 4.48 0.003653 0.03767
GO:0019905 syntaxin binding 2.63% (2/76) 4.45 0.003811 0.038976
GO:0004417 hydroxyethylthiazole kinase activity 1.32% (1/76) 8.01 0.003885 0.039098
GO:0036172 thiamine salvage 1.32% (1/76) 8.01 0.003885 0.039098
GO:0031323 regulation of cellular metabolic process 28.95% (22/76) 0.83 0.004049 0.040428
GO:0009836 fruit ripening, climacteric 2.63% (2/76) 4.36 0.004302 0.042616
GO:0008150 biological_process 76.32% (58/76) 0.31 0.004613 0.045334
GO:0043231 intracellular membrane-bounded organelle 50.0% (38/76) 0.52 0.004806 0.046873
GO:0051240 positive regulation of multicellular organismal process 9.21% (7/76) 1.75 0.004846 0.04689
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_10 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_16 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_23 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_78 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_133 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_185 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (76) (download table)

InterPro Domains

GO Terms

Family Terms