SOLTUB.AGRIA.G00000009839


Description : Replication protein A 70 kDa DNA-binding subunit B


Gene families : OG_02_0000001 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000009839
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_16


Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000054 ribosomal subunit export from nucleus IEP Predict GO terms from Neighborhoods
CC GO:0000123 histone acetyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:0000138 Golgi trans cisterna IEP Predict GO terms from Neighborhoods
BP GO:0000303 response to superoxide IEP Predict GO terms from Neighborhoods
BP GO:0000305 response to oxygen radical IEP Predict GO terms from Neighborhoods
BP GO:0000349 generation of catalytic spliceosome for first transesterification step IEP Predict GO terms from Neighborhoods
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Predict GO terms from Neighborhoods
MF GO:0000386 second spliceosomal transesterification activity IEP Predict GO terms from Neighborhoods
BP GO:0000390 spliceosomal complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0000460 maturation of 5.8S rRNA IEP Predict GO terms from Neighborhoods
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000470 maturation of LSU-rRNA IEP Predict GO terms from Neighborhoods
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0000492 box C/D snoRNP assembly IEP Predict GO terms from Neighborhoods
BP GO:0001522 pseudouridine synthesis IEP Predict GO terms from Neighborhoods
CC GO:0001651 dense fibrillar component IEP Predict GO terms from Neighborhoods
BP GO:0001732 formation of cytoplasmic translation initiation complex IEP Predict GO terms from Neighborhoods
BP GO:0002181 cytoplasmic translation IEP Predict GO terms from Neighborhoods
BP GO:0002943 tRNA dihydrouridine synthesis IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0003916 DNA topoisomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Predict GO terms from Neighborhoods
MF GO:0004029 aldehyde dehydrogenase (NAD+) activity IEP Predict GO terms from Neighborhoods
MF GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity IEP Predict GO terms from Neighborhoods
MF GO:0004165 delta(3)-delta(2)-enoyl-CoA isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0004300 enoyl-CoA hydratase activity IEP Predict GO terms from Neighborhoods
MF GO:0005365 myo-inositol transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0005638 lamin filament IEP Predict GO terms from Neighborhoods
CC GO:0005684 U2-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005690 U4atac snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predict GO terms from Neighborhoods
CC GO:0005882 intermediate filament IEP Predict GO terms from Neighborhoods
BP GO:0006041 glucosamine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006110 regulation of glycolytic process IEP Predict GO terms from Neighborhoods
BP GO:0006140 regulation of nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Predict GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006412 translation IEP Predict GO terms from Neighborhoods
BP GO:0006415 translational termination IEP Predict GO terms from Neighborhoods
BP GO:0006417 regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0006450 regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0006473 protein acetylation IEP Predict GO terms from Neighborhoods
BP GO:0006475 internal protein amino acid acetylation IEP Predict GO terms from Neighborhoods
BP GO:0006486 protein glycosylation IEP Predict GO terms from Neighborhoods
BP GO:0006809 nitric oxide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006913 nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
BP GO:0007275 multicellular organism development IEP Predict GO terms from Neighborhoods
BP GO:0007338 single fertilization IEP Predict GO terms from Neighborhoods
BP GO:0007569 obsolete cell aging IEP Predict GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0008219 cell death IEP Predict GO terms from Neighborhoods
MF GO:0008296 3'-5'-exodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008428 ribonuclease inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0008692 3-hydroxybutyryl-CoA epimerase activity IEP Predict GO terms from Neighborhoods
BP GO:0009269 response to desiccation IEP Predict GO terms from Neighborhoods
CC GO:0009526 plastid envelope IEP Predict GO terms from Neighborhoods
BP GO:0009558 embryo sac cellularization IEP Predict GO terms from Neighborhoods
BP GO:0009663 plasmodesma organization IEP Predict GO terms from Neighborhoods
BP GO:0009749 response to glucose IEP Predict GO terms from Neighborhoods
BP GO:0009804 coumarin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009805 coumarin biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0009982 pseudouridine synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0010039 response to iron ion IEP Predict GO terms from Neighborhoods
BP GO:0010078 maintenance of root meristem identity IEP Predict GO terms from Neighborhoods
BP GO:0010171 body morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010172 embryonic body morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010215 cellulose microfibril organization IEP Predict GO terms from Neighborhoods
BP GO:0010224 response to UV-B IEP Predict GO terms from Neighborhoods
BP GO:0010245 radial microtubular system formation IEP Predict GO terms from Neighborhoods
BP GO:0010421 hydrogen peroxide-mediated programmed cell death IEP Predict GO terms from Neighborhoods
BP GO:0010608 post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010628 positive regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010799 regulation of peptidyl-threonine phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0010801 negative regulation of peptidyl-threonine phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0010939 regulation of necrotic cell death IEP Predict GO terms from Neighborhoods
BP GO:0010981 regulation of cell wall macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0012501 programmed cell death IEP Predict GO terms from Neighborhoods
MF GO:0015148 D-xylose transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015166 polyol transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015168 glycerol transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015575 mannitol transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015576 sorbitol transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015591 D-ribose transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015791 polyol transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016262 protein N-acetylglucosaminyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0016573 histone acetylation IEP Predict GO terms from Neighborhoods
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016853 isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives IEP Predict GO terms from Neighborhoods
MF GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds IEP Predict GO terms from Neighborhoods
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predict GO terms from Neighborhoods
MF GO:0017046 peptide hormone binding IEP Predict GO terms from Neighborhoods
CC GO:0017122 protein N-acetylglucosaminyltransferase complex IEP Predict GO terms from Neighborhoods
BP GO:0017148 negative regulation of translation IEP Predict GO terms from Neighborhoods
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
BP GO:0018394 peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
BP GO:0018992 germ-line sex determination IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0030490 maturation of SSU-rRNA IEP Predict GO terms from Neighborhoods
MF GO:0030621 U4 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0030622 U4atac snRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Predict GO terms from Neighborhoods
BP GO:0031053 primary miRNA processing IEP Predict GO terms from Neighborhoods
CC GO:0031248 protein acetyltransferase complex IEP Predict GO terms from Neighborhoods
BP GO:0031323 regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0031428 box C/D RNP complex IEP Predict GO terms from Neighborhoods
BP GO:0031503 protein-containing complex localization IEP Predict GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Predict GO terms from Neighborhoods
BP GO:0032069 regulation of nuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032074 negative regulation of nuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0032790 ribosome disassembly IEP Predict GO terms from Neighborhoods
BP GO:0032984 protein-containing complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0032988 ribonucleoprotein complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0033137 negative regulation of peptidyl-serine phosphorylation IEP Predict GO terms from Neighborhoods
CC GO:0033290 eukaryotic 48S preinitiation complex IEP Predict GO terms from Neighborhoods
BP GO:0033750 ribosome localization IEP Predict GO terms from Neighborhoods
BP GO:0034248 regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0034511 U3 snoRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0034512 box C/D RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035020 regulation of Rac protein signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0035278 miRNA-mediated gene silencing by inhibition of translation IEP Predict GO terms from Neighborhoods
BP GO:0036473 cell death in response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:0036474 cell death in response to hydrogen peroxide IEP Predict GO terms from Neighborhoods
BP GO:0040021 hermaphrodite germ-line sex determination IEP Predict GO terms from Neighborhoods
BP GO:0040022 feminization of hermaphroditic germ-line IEP Predict GO terms from Neighborhoods
BP GO:0040024 dauer larval development IEP Predict GO terms from Neighborhoods
BP GO:0042255 ribosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0042256 mature ribosome assembly IEP Predict GO terms from Neighborhoods
CC GO:0042588 zymogen granule IEP Predict GO terms from Neighborhoods
MF GO:0043021 ribonucleoprotein complex binding IEP Predict GO terms from Neighborhoods
MF GO:0043022 ribosome binding IEP Predict GO terms from Neighborhoods
BP GO:0043043 peptide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043413 macromolecule glycosylation IEP Predict GO terms from Neighborhoods
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predict GO terms from Neighborhoods
BP GO:0043470 regulation of carbohydrate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043981 histone H4-K5 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0043982 histone H4-K8 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0043984 histone H4-K16 acetylation IEP Predict GO terms from Neighborhoods
MF GO:0044692 exoribonuclease activator activity IEP Predict GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0045652 regulation of megakaryocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0045793 positive regulation of cell size IEP Predict GO terms from Neighborhoods
BP GO:0045903 positive regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0046209 nitric oxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0048015 phosphatidylinositol-mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0048017 inositol lipid-mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0048312 intracellular distribution of mitochondria IEP Predict GO terms from Neighborhoods
MF GO:0048531 beta-1,3-galactosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0048863 stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0051168 nuclear export IEP Predict GO terms from Neighborhoods
BP GO:0051169 nuclear transport IEP Predict GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0051427 hormone receptor binding IEP Predict GO terms from Neighborhoods
MF GO:0051428 peptide hormone receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0051640 organelle localization IEP Predict GO terms from Neighborhoods
MF GO:0051880 G-quadruplex DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0060544 regulation of necroptotic process IEP Predict GO terms from Neighborhoods
MF GO:0060698 endoribonuclease inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:0060699 regulation of endoribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0060700 regulation of ribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0060701 negative regulation of ribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0060702 negative regulation of endoribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0060964 regulation of miRNA-mediated gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0061085 regulation of histone H3-K27 methylation IEP Predict GO terms from Neighborhoods
BP GO:0061087 positive regulation of histone H3-K27 methylation IEP Predict GO terms from Neighborhoods
BP GO:0061158 3'-UTR-mediated mRNA destabilization IEP Predict GO terms from Neighborhoods
BP GO:0062098 regulation of programmed necrotic cell death IEP Predict GO terms from Neighborhoods
BP GO:0070085 glycosylation IEP Predict GO terms from Neighborhoods
CC GO:0070461 SAGA-type complex IEP Predict GO terms from Neighborhoods
BP GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay IEP Predict GO terms from Neighborhoods
BP GO:0070918 small regulatory ncRNA processing IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071020 post-spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0071021 U2-type post-spliceosomal complex IEP Predict GO terms from Neighborhoods
BP GO:0071103 DNA conformation change IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0080090 regulation of primary metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0080182 histone H3-K4 trimethylation IEP Predict GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090313 regulation of protein targeting to membrane IEP Predict GO terms from Neighborhoods
BP GO:0090315 negative regulation of protein targeting to membrane IEP Predict GO terms from Neighborhoods
BP GO:0090548 response to nitrate starvation IEP Predict GO terms from Neighborhoods
CC GO:0097014 ciliary plasm IEP Predict GO terms from Neighborhoods
MF GO:0097363 protein O-GlcNAc transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0097468 programmed cell death in response to reactive oxygen species IEP Predict GO terms from Neighborhoods
MF GO:0106145 scopoletin 8-hydroxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0106147 fraxetin biosynthesis IEP Predict GO terms from Neighborhoods
MF GO:0106413 dihydrouridine synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0120162 positive regulation of cold-induced thermogenesis IEP Predict GO terms from Neighborhoods
MF GO:0140721 nuclease inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:1900037 regulation of cellular response to hypoxia IEP Predict GO terms from Neighborhoods
BP GO:1900038 negative regulation of cellular response to hypoxia IEP Predict GO terms from Neighborhoods
BP GO:1900370 positive regulation of post-transcriptional gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:1900542 regulation of purine nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901333 positive regulation of lateral root development IEP Predict GO terms from Neighborhoods
CC GO:1902493 acetyltransferase complex IEP Predict GO terms from Neighborhoods
BP GO:1903578 regulation of ATP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1905214 regulation of RNA binding IEP Predict GO terms from Neighborhoods
BP GO:1905216 positive regulation of RNA binding IEP Predict GO terms from Neighborhoods
BP GO:1905623 positive regulation of leaf development IEP Predict GO terms from Neighborhoods
BP GO:1990403 embryonic brain development IEP Predict GO terms from Neighborhoods
BP GO:1990641 response to iron ion starvation IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
MF GO:1990932 5.8S rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000637 positive regulation of miRNA-mediated gene silencing IEP Predict GO terms from Neighborhoods
BP GO:2001009 regulation of plant-type cell wall cellulose biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR013955 Rep_factor-A_C 233 347
IPR012340 NA-bd_OB-fold 218 309
IPR012340 NA-bd_OB-fold 5 106
No external refs found!