Coexpression cluster: Cluster_206 (HCCA Clusters (HRR 50 & PCC 0.5))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006139 nucleobase-containing compound metabolic process 36.76% (25/68) 1.86 0.0 3e-06
GO:0090304 nucleic acid metabolic process 33.82% (23/68) 2.04 0.0 3e-06
GO:0016070 RNA metabolic process 26.47% (18/68) 2.15 0.0 3.1e-05
GO:0046483 heterocycle metabolic process 36.76% (25/68) 1.48 1e-06 0.00029
GO:0006396 RNA processing 20.59% (14/68) 2.25 1e-06 0.000315
GO:0034641 cellular nitrogen compound metabolic process 36.76% (25/68) 1.43 1e-06 0.000373
GO:0006400 tRNA modification 8.82% (6/68) 4.04 2e-06 0.000402
GO:0043414 macromolecule methylation 10.29% (7/68) 3.42 4e-06 0.000786
GO:0043170 macromolecule metabolic process 47.06% (32/68) 1.07 6e-06 0.00102
GO:0006725 cellular aromatic compound metabolic process 36.76% (25/68) 1.29 9e-06 0.00129
GO:0140513 nuclear protein-containing complex 17.65% (12/68) 2.21 9e-06 0.001349
GO:0009451 RNA modification 11.76% (8/68) 2.9 1.2e-05 0.001479
GO:0034660 ncRNA metabolic process 14.71% (10/68) 2.43 1.5e-05 0.001505
GO:0031981 nuclear lumen 7.35% (5/68) 4.03 1.4e-05 0.001569
GO:0008033 tRNA processing 8.82% (6/68) 3.53 1.4e-05 0.001603
GO:0060255 regulation of macromolecule metabolic process 36.76% (25/68) 1.22 2.1e-05 0.0019
GO:0010468 regulation of gene expression 32.35% (22/68) 1.34 2.3e-05 0.001963
GO:0034470 ncRNA processing 13.24% (9/68) 2.56 2.1e-05 0.002012
GO:0140098 catalytic activity, acting on RNA 11.76% (8/68) 2.72 2.9e-05 0.002211
GO:0043412 macromolecule modification 30.88% (21/68) 1.37 2.8e-05 0.002252
GO:0016071 mRNA metabolic process 13.24% (9/68) 2.4 4.9e-05 0.002974
GO:1901360 organic cyclic compound metabolic process 36.76% (25/68) 1.15 4.5e-05 0.002996
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 8.82% (6/68) 3.21 4.8e-05 0.003001
GO:0032259 methylation 10.29% (7/68) 2.86 5.2e-05 0.00303
GO:0002943 tRNA dihydrouridine synthesis 2.94% (2/68) 7.58 4.5e-05 0.003068
GO:0006304 DNA modification 5.88% (4/68) 4.37 4.4e-05 0.003147
GO:0044260 cellular macromolecule metabolic process 25.0% (17/68) 1.51 6e-05 0.003347
GO:0140640 catalytic activity, acting on a nucleic acid 13.24% (9/68) 2.35 6.4e-05 0.003477
GO:0006399 tRNA metabolic process 8.82% (6/68) 3.12 6.9e-05 0.003606
GO:0043484 regulation of RNA splicing 7.35% (5/68) 3.55 7.2e-05 0.003614
GO:0003727 single-stranded RNA binding 7.35% (5/68) 3.51 8.2e-05 0.003992
GO:0017150 tRNA dihydrouridine synthase activity 2.94% (2/68) 7.0 0.000107 0.004364
GO:0106413 dihydrouridine synthase activity 2.94% (2/68) 7.0 0.000107 0.004364
GO:0004661 protein geranylgeranyltransferase activity 2.94% (2/68) 7.0 0.000107 0.004364
GO:0008318 protein prenyltransferase activity 2.94% (2/68) 7.0 0.000107 0.004364
GO:0006807 nitrogen compound metabolic process 50.0% (34/68) 0.84 9.5e-05 0.004509
GO:0005730 nucleolus 14.71% (10/68) 2.08 0.000117 0.004656
GO:0003723 RNA binding 20.59% (14/68) 1.66 0.000102 0.004677
GO:0051028 mRNA transport 5.88% (4/68) 3.95 0.000137 0.00531
GO:0003676 nucleic acid binding 32.35% (22/68) 1.15 0.000163 0.006168
GO:0016427 tRNA (cytosine) methyltransferase activity 2.94% (2/68) 6.58 0.000195 0.007196
GO:0008168 methyltransferase activity 8.82% (6/68) 2.82 0.000207 0.007458
GO:0008173 RNA methyltransferase activity 4.41% (3/68) 4.69 0.000223 0.007674
GO:0005681 spliceosomal complex 7.35% (5/68) 3.2 0.00022 0.007756
GO:0019219 regulation of nucleobase-containing compound metabolic process 26.47% (18/68) 1.3 0.000231 0.007778
GO:0018342 protein prenylation 2.94% (2/68) 6.36 0.000268 0.008117
GO:0097354 prenylation 2.94% (2/68) 6.36 0.000268 0.008117
GO:0044238 primary metabolic process 52.94% (36/68) 0.73 0.000252 0.008143
GO:0016741 transferase activity, transferring one-carbon groups 8.82% (6/68) 2.77 0.000251 0.008271
GO:0051252 regulation of RNA metabolic process 25.0% (17/68) 1.34 0.000264 0.008333
GO:0050657 nucleic acid transport 5.88% (4/68) 3.62 0.000325 0.009482
GO:0050658 RNA transport 5.88% (4/68) 3.62 0.000325 0.009482
GO:0051236 establishment of RNA localization 5.88% (4/68) 3.61 0.000332 0.009493
GO:0016607 nuclear speck 7.35% (5/68) 3.05 0.000358 0.009687
GO:0003691 double-stranded telomeric DNA binding 2.94% (2/68) 6.17 0.000352 0.009709
GO:0006406 mRNA export from nucleus 4.41% (3/68) 4.47 0.000349 0.009796
GO:0006305 DNA alkylation 4.41% (3/68) 4.38 0.000419 0.010582
GO:0006306 DNA methylation 4.41% (3/68) 4.38 0.000419 0.010582
GO:0044237 cellular metabolic process 54.41% (37/68) 0.68 0.000401 0.010669
GO:1902494 catalytic complex 16.18% (11/68) 1.73 0.000415 0.010853
GO:0006241 CTP biosynthetic process 2.94% (2/68) 6.0 0.000448 0.010957
GO:0046036 CTP metabolic process 2.94% (2/68) 6.0 0.000448 0.010957
GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process 2.94% (2/68) 5.92 0.0005 0.01185
GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process 2.94% (2/68) 5.92 0.0005 0.01185
GO:0019222 regulation of metabolic process 36.76% (25/68) 0.93 0.000548 0.012789
GO:0006259 DNA metabolic process 11.76% (8/68) 2.08 0.000603 0.013854
GO:0044728 DNA methylation or demethylation 4.41% (3/68) 4.18 0.000622 0.014064
GO:0006405 RNA export from nucleus 4.41% (3/68) 4.12 0.000701 0.015625
GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process 2.94% (2/68) 5.64 0.000737 0.016189
GO:0035145 exon-exon junction complex 2.94% (2/68) 5.52 0.000872 0.01888
GO:0008175 tRNA methyltransferase activity 2.94% (2/68) 5.47 0.000943 0.020142
GO:0080090 regulation of primary metabolic process 30.88% (21/68) 0.99 0.001109 0.023356
GO:0042054 histone methyltransferase activity 4.41% (3/68) 3.88 0.001137 0.023606
GO:0140101 catalytic activity, acting on a tRNA 5.88% (4/68) 3.1 0.001264 0.024572
GO:0030488 tRNA methylation 2.94% (2/68) 5.26 0.001257 0.024748
GO:0051171 regulation of nitrogen compound metabolic process 29.41% (20/68) 1.01 0.001246 0.024847
GO:0009887 animal organ morphogenesis 5.88% (4/68) 3.11 0.00123 0.024864
GO:0032991 protein-containing complex 26.47% (18/68) 1.1 0.001217 0.02493
GO:0009147 pyrimidine nucleoside triphosphate metabolic process 2.94% (2/68) 5.21 0.001342 0.02512
GO:0008649 rRNA methyltransferase activity 2.94% (2/68) 5.21 0.001342 0.02512
GO:0140102 catalytic activity, acting on a rRNA 2.94% (2/68) 5.21 0.001342 0.02512
GO:0035097 histone methyltransferase complex 4.41% (3/68) 3.76 0.001439 0.026601
GO:0070611 histone methyltransferase activity (H3-R2 specific) 1.47% (1/68) 9.17 0.00174 0.02664
GO:0070612 histone methyltransferase activity (H2A-R3 specific) 1.47% (1/68) 9.17 0.00174 0.02664
GO:0120049 snRNA (adenine-N6)-methylation 1.47% (1/68) 9.17 0.00174 0.02664
GO:0002129 wobble position guanine ribose methylation 1.47% (1/68) 9.17 0.00174 0.02664
GO:0106339 tRNA (cytidine 32-2'-O)-methyltransferase activity 1.47% (1/68) 9.17 0.00174 0.02664
GO:0106340 tRNA (guanosine 32-2'-O)-methyltransferase activity 1.47% (1/68) 9.17 0.00174 0.02664
GO:0072714 response to selenite ion 1.47% (1/68) 9.17 0.00174 0.02664
GO:0072715 cellular response to selenite ion 1.47% (1/68) 9.17 0.00174 0.02664
GO:0097078 FAL1-SGD1 complex 1.47% (1/68) 9.17 0.00174 0.02664
GO:1903040 exon-exon junction complex assembly 1.47% (1/68) 9.17 0.00174 0.02664
GO:1904570 negative regulation of selenocysteine incorporation 1.47% (1/68) 9.17 0.00174 0.02664
GO:1904572 negative regulation of mRNA binding 1.47% (1/68) 9.17 0.00174 0.02664
GO:1904573 regulation of selenocysteine insertion sequence binding 1.47% (1/68) 9.17 0.00174 0.02664
GO:1904574 negative regulation of selenocysteine insertion sequence binding 1.47% (1/68) 9.17 0.00174 0.02664
GO:1905215 negative regulation of RNA binding 1.47% (1/68) 9.17 0.00174 0.02664
GO:0008276 protein methyltransferase activity 4.41% (3/68) 3.65 0.001787 0.026824
GO:0031123 RNA 3'-end processing 4.41% (3/68) 3.75 0.001472 0.026878
GO:0010556 regulation of macromolecule biosynthetic process 23.53% (16/68) 1.14 0.001782 0.027021
GO:0009220 pyrimidine ribonucleotide biosynthetic process 2.94% (2/68) 5.08 0.001614 0.029125
GO:0009218 pyrimidine ribonucleotide metabolic process 2.94% (2/68) 4.88 0.00212 0.030604
GO:0043047 single-stranded telomeric DNA binding 2.94% (2/68) 4.88 0.00212 0.030604
GO:0098847 sequence-specific single stranded DNA binding 2.94% (2/68) 4.88 0.00212 0.030604
GO:0031323 regulation of cellular metabolic process 30.88% (21/68) 0.92 0.002087 0.031015
GO:0051168 nuclear export 4.41% (3/68) 3.53 0.002269 0.032454
GO:0015931 nucleobase-containing compound transport 5.88% (4/68) 2.85 0.002378 0.033384
GO:0006397 mRNA processing 7.35% (5/68) 2.43 0.002362 0.033459
GO:0034708 methyltransferase complex 4.41% (3/68) 3.49 0.002492 0.034654
GO:0034654 nucleobase-containing compound biosynthetic process 8.82% (6/68) 2.11 0.002691 0.037087
GO:1990234 transferase complex 10.29% (7/68) 1.89 0.002744 0.037471
GO:0050890 cognition 4.41% (3/68) 3.39 0.003027 0.040975
GO:0004660 protein farnesyltransferase activity 1.47% (1/68) 8.17 0.003476 0.042847
GO:0005965 protein farnesyltransferase complex 1.47% (1/68) 8.17 0.003476 0.042847
GO:0018343 protein farnesylation 1.47% (1/68) 8.17 0.003476 0.042847
GO:0051770 positive regulation of nitric-oxide synthase biosynthetic process 1.47% (1/68) 8.17 0.003476 0.042847
GO:0009007 site-specific DNA-methyltransferase (adenine-specific) activity 1.47% (1/68) 8.17 0.003476 0.042847
GO:0032775 DNA methylation on adenine 1.47% (1/68) 8.17 0.003476 0.042847
GO:0046692 sperm competition 1.47% (1/68) 8.17 0.003476 0.042847
GO:0002131 wobble position cytosine ribose methylation 1.47% (1/68) 8.17 0.003476 0.042847
GO:0042398 cellular modified amino acid biosynthetic process 2.94% (2/68) 4.58 0.003194 0.042855
GO:0006221 pyrimidine nucleotide biosynthetic process 2.94% (2/68) 4.55 0.003327 0.043852
GO:0004659 prenyltransferase activity 2.94% (2/68) 4.55 0.003327 0.043852
GO:0008306 associative learning 2.94% (2/68) 4.44 0.00388 0.047442
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_226 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_250 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_69 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_74 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_106 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_125 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_163 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_204 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (68) (download table)

InterPro Domains

GO Terms

Family Terms