Coexpression cluster: Cluster_116 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1901428 regulation of syringal lignin biosynthetic process 10.99% (10/91) 6.14 0.0 0.0
GO:1901430 positive regulation of syringal lignin biosynthetic process 10.99% (10/91) 6.14 0.0 0.0
GO:1900378 positive regulation of secondary metabolite biosynthetic process 10.99% (10/91) 5.56 0.0 0.0
GO:0004601 peroxidase activity 13.19% (12/91) 4.57 0.0 0.0
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor 13.19% (12/91) 4.52 0.0 0.0
GO:0016209 antioxidant activity 13.19% (12/91) 4.29 0.0 0.0
GO:0010089 xylem development 13.19% (12/91) 4.12 0.0 0.0
GO:0071456 cellular response to hypoxia 13.19% (12/91) 3.94 0.0 0.0
GO:1901141 regulation of lignin biosynthetic process 10.99% (10/91) 4.53 0.0 0.0
GO:0036294 cellular response to decreased oxygen levels 13.19% (12/91) 3.91 0.0 0.0
GO:0071453 cellular response to oxygen levels 13.19% (12/91) 3.78 0.0 0.0
GO:0010087 phloem or xylem histogenesis 15.38% (14/91) 3.13 0.0 0.0
GO:2000762 regulation of phenylpropanoid metabolic process 10.99% (10/91) 3.71 0.0 0.0
GO:0001666 response to hypoxia 13.19% (12/91) 3.13 0.0 1e-06
GO:1900376 regulation of secondary metabolite biosynthetic process 10.99% (10/91) 3.55 0.0 1e-06
GO:0016491 oxidoreductase activity 25.27% (23/91) 1.92 0.0 1e-06
GO:0036293 response to decreased oxygen levels 13.19% (12/91) 3.04 0.0 2e-06
GO:0070482 response to oxygen levels 13.19% (12/91) 2.96 0.0 3e-06
GO:0042744 hydrogen peroxide catabolic process 6.59% (6/91) 4.55 0.0 1.3e-05
GO:0009888 tissue development 16.48% (15/91) 2.2 1e-06 4e-05
GO:0005576 extracellular region 18.68% (17/91) 2.01 1e-06 4.2e-05
GO:0009505 plant-type cell wall 13.19% (12/91) 2.53 1e-06 5.2e-05
GO:0042743 hydrogen peroxide metabolic process 6.59% (6/91) 4.14 1e-06 5.3e-05
GO:0043455 regulation of secondary metabolic process 10.99% (10/91) 2.86 1e-06 5.5e-05
GO:0047036 codeinone reductase (NADPH) activity 3.3% (3/91) 6.87 2e-06 8.1e-05
GO:0034224 cellular response to zinc ion starvation 3.3% (3/91) 6.75 3e-06 9.3e-05
GO:0120127 response to zinc ion starvation 3.3% (3/91) 6.75 3e-06 9.3e-05
GO:1901867 ecgonine methyl ester metabolic process 3.3% (3/91) 6.75 3e-06 9.3e-05
GO:1901870 ecgonone methyl ester metabolic process 3.3% (3/91) 6.75 3e-06 9.3e-05
GO:0002215 defense response to nematode 5.49% (5/91) 4.51 3e-06 9.7e-05
GO:0033707 3''-deamino-3''-oxonicotianamine reductase activity 3.3% (3/91) 6.63 3e-06 0.000112
GO:0019290 siderophore biosynthetic process 3.3% (3/91) 6.52 4e-06 0.000134
GO:0070401 NADP+ binding 3.3% (3/91) 6.52 4e-06 0.000134
GO:0098869 cellular oxidant detoxification 6.59% (6/91) 3.82 5e-06 0.000139
GO:0009237 siderophore metabolic process 3.3% (3/91) 6.42 5e-06 0.000142
GO:0009710 tropane alkaloid biosynthetic process 3.3% (3/91) 6.42 5e-06 0.000142
GO:0046448 tropane alkaloid metabolic process 3.3% (3/91) 6.42 5e-06 0.000142
GO:0044550 secondary metabolite biosynthetic process 15.38% (14/91) 2.08 5e-06 0.000146
GO:0020037 heme binding 8.79% (8/91) 3.08 5e-06 0.000147
GO:0009822 alkaloid catabolic process 3.3% (3/91) 6.33 7e-06 0.00017
GO:0030312 external encapsulating structure 17.58% (16/91) 1.83 1e-05 0.000235
GO:0048046 apoplast 12.09% (11/91) 2.29 1.6e-05 0.000379
GO:0046906 tetrapyrrole binding 8.79% (8/91) 2.82 1.9e-05 0.000429
GO:0019184 nonribosomal peptide biosynthetic process 3.3% (3/91) 5.87 1.8e-05 0.00043
GO:0005618 cell wall 16.48% (15/91) 1.82 2.1e-05 0.000462
GO:1990748 cellular detoxification 6.59% (6/91) 3.39 2.5e-05 0.00055
GO:0072593 reactive oxygen species metabolic process 6.59% (6/91) 3.38 2.5e-05 0.000551
GO:0019748 secondary metabolic process 16.48% (15/91) 1.76 3.2e-05 0.000669
GO:0009698 phenylpropanoid metabolic process 12.09% (11/91) 2.09 5.4e-05 0.001118
GO:0016229 steroid dehydrogenase activity 3.3% (3/91) 5.29 6.3e-05 0.00126
GO:1901362 organic cyclic compound biosynthetic process 19.78% (18/91) 1.48 6.3e-05 0.001274
GO:0009699 phenylpropanoid biosynthetic process 10.99% (10/91) 2.17 7.7e-05 0.001494
GO:0009808 lignin metabolic process 6.59% (6/91) 2.91 0.000153 0.002934
GO:0008106 alcohol dehydrogenase (NADP+) activity 3.3% (3/91) 4.78 0.000184 0.003454
GO:1901926 cadinene metabolic process 3.3% (3/91) 4.69 0.000221 0.003936
GO:1901928 cadinene biosynthetic process 3.3% (3/91) 4.69 0.000221 0.003936
GO:0048367 shoot system development 8.79% (8/91) 2.31 0.000215 0.003959
GO:0009908 flower development 6.59% (6/91) 2.8 0.000237 0.004155
GO:1901868 ecgonine methyl ester catabolic process 2.2% (2/91) 6.29 0.000291 0.004761
GO:1901869 ecgonine methyl ester biosynthetic process 2.2% (2/91) 6.29 0.000291 0.004761
GO:1901871 ecgonone methyl ester catabolic process 2.2% (2/91) 6.29 0.000291 0.004761
GO:1901872 ecgonone methyl ester biosynthetic process 2.2% (2/91) 6.29 0.000291 0.004761
GO:0047461 (+)-delta-cadinene synthase activity 3.3% (3/91) 4.5 0.000326 0.005253
GO:0033383 geranyl diphosphate metabolic process 3.3% (3/91) 4.45 0.000361 0.005726
GO:0008171 O-methyltransferase activity 4.4% (4/91) 3.56 0.000388 0.006058
GO:0009809 lignin biosynthetic process 5.49% (5/91) 2.98 0.000457 0.007022
GO:0098754 detoxification 6.59% (6/91) 2.58 0.000525 0.007958
GO:0030744 luteolin O-methyltransferase activity 2.2% (2/91) 5.84 0.000552 0.008002
GO:0030755 quercetin 3-O-methyltransferase activity 2.2% (2/91) 5.84 0.000552 0.008002
GO:0047763 caffeate O-methyltransferase activity 2.2% (2/91) 5.84 0.000552 0.008002
GO:0005794 Golgi apparatus 12.09% (11/91) 1.7 0.00056 0.008008
GO:0004033 aldo-keto reductase (NADP) activity 3.3% (3/91) 4.22 0.000572 0.008067
GO:1990641 response to iron ion starvation 3.3% (3/91) 3.92 0.00105 0.014601
GO:0010334 sesquiterpene synthase activity 3.3% (3/91) 3.89 0.001123 0.0152
GO:0045338 farnesyl diphosphate metabolic process 3.3% (3/91) 3.89 0.001123 0.0152
GO:0048731 system development 9.89% (9/91) 1.79 0.001209 0.016147
GO:0009821 alkaloid biosynthetic process 5.49% (5/91) 2.65 0.001268 0.016719
GO:0031328 positive regulation of cellular biosynthetic process 15.38% (14/91) 1.3 0.001529 0.019893
GO:0090567 reproductive shoot system development 6.59% (6/91) 2.26 0.001627 0.020903
GO:0051761 sesquiterpene metabolic process 4.4% (4/91) 2.95 0.00184 0.022771
GO:0051762 sesquiterpene biosynthetic process 4.4% (4/91) 2.95 0.00184 0.022771
GO:0009891 positive regulation of biosynthetic process 15.38% (14/91) 1.27 0.0018 0.022832
GO:0033554 cellular response to stress 19.78% (18/91) 1.06 0.001988 0.02431
GO:0019438 aromatic compound biosynthetic process 14.29% (13/91) 1.29 0.0024 0.028998
GO:0009820 alkaloid metabolic process 6.59% (6/91) 2.1 0.002827 0.033754
GO:0010333 terpene synthase activity 3.3% (3/91) 3.33 0.003378 0.039863
GO:0051555 flavonol biosynthetic process 2.2% (2/91) 4.42 0.003947 0.046053
GO:0033799 myricetin 3'-O-methyltransferase activity 2.2% (2/91) 4.39 0.004144 0.047792
GO:0016838 carbon-oxygen lyase activity, acting on phosphates 3.3% (3/91) 3.21 0.004255 0.048521
GO:0051554 flavonol metabolic process 2.2% (2/91) 4.35 0.004344 0.048993
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_123 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_134 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_135 0.018 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_139 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_154 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_174 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_240 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_38 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_64 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_66 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_70 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_84 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_95 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_107 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_110 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_114 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (91) (download table)

InterPro Domains

GO Terms

Family Terms