Coexpression cluster: Cluster_110 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009834 plant-type secondary cell wall biogenesis 27.4% (20/73) 5.55 0.0 0.0
GO:0010383 cell wall polysaccharide metabolic process 30.14% (22/73) 5.15 0.0 0.0
GO:0009832 plant-type cell wall biogenesis 28.77% (21/73) 4.97 0.0 0.0
GO:0044036 cell wall macromolecule metabolic process 30.14% (22/73) 4.79 0.0 0.0
GO:0010410 hemicellulose metabolic process 24.66% (18/73) 5.36 0.0 0.0
GO:0044264 cellular polysaccharide metabolic process 31.51% (23/73) 4.36 0.0 0.0
GO:0071669 plant-type cell wall organization or biogenesis 34.25% (25/73) 4.04 0.0 0.0
GO:0042546 cell wall biogenesis 28.77% (21/73) 4.63 0.0 0.0
GO:0045491 xylan metabolic process 21.92% (16/73) 5.78 0.0 0.0
GO:0044262 cellular carbohydrate metabolic process 32.88% (24/73) 3.91 0.0 0.0
GO:0033692 cellular polysaccharide biosynthetic process 24.66% (18/73) 4.89 0.0 0.0
GO:0005976 polysaccharide metabolic process 32.88% (24/73) 3.82 0.0 0.0
GO:0071554 cell wall organization or biogenesis 38.36% (28/73) 3.35 0.0 0.0
GO:0045492 xylan biosynthetic process 17.81% (13/73) 6.09 0.0 0.0
GO:0070592 cell wall polysaccharide biosynthetic process 20.55% (15/73) 5.41 0.0 0.0
GO:0044038 cell wall macromolecule biosynthetic process 20.55% (15/73) 5.32 0.0 0.0
GO:0070589 cellular component macromolecule biosynthetic process 20.55% (15/73) 5.32 0.0 0.0
GO:0000271 polysaccharide biosynthetic process 24.66% (18/73) 4.59 0.0 0.0
GO:0034637 cellular carbohydrate biosynthetic process 24.66% (18/73) 4.58 0.0 0.0
GO:0044085 cellular component biogenesis 28.77% (21/73) 4.01 0.0 0.0
GO:0016051 carbohydrate biosynthetic process 24.66% (18/73) 4.02 0.0 0.0
GO:0005975 carbohydrate metabolic process 34.25% (25/73) 3.08 0.0 0.0
GO:0098791 Golgi apparatus subcompartment 26.03% (19/73) 3.61 0.0 0.0
GO:0005802 trans-Golgi network 23.29% (17/73) 3.7 0.0 0.0
GO:0030244 cellulose biosynthetic process 13.7% (10/73) 5.53 0.0 0.0
GO:0051274 beta-glucan biosynthetic process 13.7% (10/73) 5.42 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 24.66% (18/73) 3.35 0.0 0.0
GO:0030243 cellulose metabolic process 13.7% (10/73) 5.26 0.0 0.0
GO:0006073 cellular glucan metabolic process 17.81% (13/73) 4.16 0.0 0.0
GO:0044042 glucan metabolic process 17.81% (13/73) 4.14 0.0 0.0
GO:0045488 pectin metabolic process 17.81% (13/73) 4.14 0.0 0.0
GO:0031984 organelle subcompartment 26.03% (19/73) 3.09 0.0 0.0
GO:0010393 galacturonan metabolic process 17.81% (13/73) 4.12 0.0 0.0
GO:0009250 glucan biosynthetic process 13.7% (10/73) 4.86 0.0 0.0
GO:0051273 beta-glucan metabolic process 13.7% (10/73) 4.86 0.0 0.0
GO:2000652 regulation of secondary cell wall biogenesis 13.7% (10/73) 4.83 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 38.36% (28/73) 2.13 0.0 0.0
GO:0045229 external encapsulating structure organization 26.03% (19/73) 2.88 0.0 0.0
GO:0052716 hydroquinone:oxygen oxidoreductase activity 8.22% (6/73) 6.95 0.0 0.0
GO:1990937 xylan acetylation 8.22% (6/73) 6.89 0.0 0.0
GO:0046274 lignin catabolic process 8.22% (6/73) 6.89 0.0 0.0
GO:0071840 cellular component organization or biogenesis 52.05% (38/73) 1.58 0.0 0.0
GO:0016413 O-acetyltransferase activity 12.33% (9/73) 4.85 0.0 0.0
GO:1903338 regulation of cell wall organization or biogenesis 13.7% (10/73) 4.44 0.0 0.0
GO:0005768 endosome 24.66% (18/73) 2.82 0.0 0.0
GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor 9.59% (7/73) 5.76 0.0 0.0
GO:0045489 pectin biosynthetic process 12.33% (9/73) 4.74 0.0 0.0
GO:1990538 xylan O-acetyltransferase activity 8.22% (6/73) 6.44 0.0 0.0
GO:0046271 phenylpropanoid catabolic process 8.22% (6/73) 6.36 0.0 0.0
GO:0016407 acetyltransferase activity 13.7% (10/73) 4.17 0.0 0.0
GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors 9.59% (7/73) 5.46 0.0 0.0
GO:0009059 macromolecule biosynthetic process 24.66% (18/73) 2.65 0.0 0.0
GO:0009808 lignin metabolic process 13.7% (10/73) 3.97 0.0 0.0
GO:0000139 Golgi membrane 16.44% (12/73) 3.45 0.0 0.0
GO:0071555 cell wall organization 20.55% (15/73) 2.89 0.0 0.0
GO:0044249 cellular biosynthetic process 42.47% (31/73) 1.6 0.0 0.0
GO:0008374 O-acyltransferase activity 12.33% (9/73) 4.01 0.0 0.0
GO:0009058 biosynthetic process 43.84% (32/73) 1.48 0.0 0.0
GO:0031410 cytoplasmic vesicle 24.66% (18/73) 2.24 0.0 1e-06
GO:0009664 plant-type cell wall organization 13.7% (10/73) 3.43 0.0 1e-06
GO:0097708 intracellular vesicle 24.66% (18/73) 2.2 0.0 1e-06
GO:0046688 response to copper ion 8.22% (6/73) 4.79 0.0 2e-06
GO:0009698 phenylpropanoid metabolic process 17.81% (13/73) 2.65 0.0 3e-06
GO:0009827 plant-type cell wall modification 10.96% (8/73) 3.74 0.0 3e-06
GO:0031982 vesicle 24.66% (18/73) 2.06 0.0 4e-06
GO:0044087 regulation of cellular component biogenesis 15.07% (11/73) 2.94 0.0 4e-06
GO:1901576 organic substance biosynthetic process 39.73% (29/73) 1.42 0.0 4e-06
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups 13.7% (10/73) 3.09 0.0 6e-06
GO:0048226 Casparian strip 8.22% (6/73) 4.47 0.0 6e-06
GO:0071704 organic substance metabolic process 65.75% (48/73) 0.83 1e-06 1.1e-05
GO:0016746 acyltransferase activity 13.7% (10/73) 2.96 1e-06 1.2e-05
GO:0008152 metabolic process 68.49% (50/73) 0.79 1e-06 1.2e-05
GO:0009809 lignin biosynthetic process 9.59% (7/73) 3.78 1e-06 1.5e-05
GO:0060384 innervation 4.11% (3/73) 7.19 1e-06 1.9e-05
GO:0044237 cellular metabolic process 61.64% (45/73) 0.86 1e-06 2.1e-05
GO:0009628 response to abiotic stimulus 43.84% (32/73) 1.19 1e-06 2.2e-05
GO:0010417 glucuronoxylan biosynthetic process 5.48% (4/73) 5.64 1e-06 2.3e-05
GO:0009987 cellular process 79.45% (58/73) 0.61 1e-06 2.3e-05
GO:0009825 multidimensional cell growth 8.22% (6/73) 4.11 1e-06 2.4e-05
GO:1901348 positive regulation of secondary cell wall biogenesis 5.48% (4/73) 5.61 1e-06 2.4e-05
GO:1903340 positive regulation of cell wall organization or biogenesis 5.48% (4/73) 5.61 1e-06 2.4e-05
GO:0010413 glucuronoxylan metabolic process 5.48% (4/73) 5.57 2e-06 2.6e-05
GO:0048364 root development 16.44% (12/73) 2.46 2e-06 2.6e-05
GO:0042545 cell wall modification 12.33% (9/73) 3.03 2e-06 2.6e-05
GO:0035136 forelimb morphogenesis 4.11% (3/73) 6.95 2e-06 2.8e-05
GO:0008045 motor neuron axon guidance 4.11% (3/73) 6.74 3e-06 4.4e-05
GO:0010259 multicellular organism aging 4.11% (3/73) 6.74 3e-06 4.4e-05
GO:0080022 primary root development 8.22% (6/73) 3.92 3e-06 4.6e-05
GO:0003342 proepicardium development 2.74% (2/73) 9.06 3e-06 5e-05
GO:0010837 regulation of keratinocyte proliferation 2.74% (2/73) 9.06 3e-06 5e-05
GO:0045647 negative regulation of erythrocyte differentiation 2.74% (2/73) 9.06 3e-06 5e-05
GO:0097403 cellular response to raffinose 2.74% (2/73) 9.06 3e-06 5e-05
GO:1901545 response to raffinose 2.74% (2/73) 9.06 3e-06 5e-05
GO:1904246 negative regulation of polynucleotide adenylyltransferase activity 2.74% (2/73) 9.06 3e-06 5e-05
GO:0016740 transferase activity 36.99% (27/73) 1.29 4e-06 5.2e-05
GO:0030513 positive regulation of BMP signaling pathway 4.11% (3/73) 6.48 5e-06 7.1e-05
GO:0016043 cellular component organization 38.36% (28/73) 1.23 5e-06 7.2e-05
GO:0045893 positive regulation of DNA-templated transcription 19.18% (14/73) 2.02 7e-06 9.7e-05
GO:1903508 positive regulation of nucleic acid-templated transcription 19.18% (14/73) 2.01 8e-06 0.000106
GO:1902680 positive regulation of RNA biosynthetic process 19.18% (14/73) 2.01 8e-06 0.000106
GO:0035108 limb morphogenesis 4.11% (3/73) 6.26 8e-06 0.00011
GO:0005507 copper ion binding 8.22% (6/73) 3.66 8e-06 0.000112
GO:0008150 biological_process 84.93% (62/73) 0.46 1.1e-05 0.000145
GO:0009699 phenylpropanoid biosynthetic process 13.7% (10/73) 2.49 1.1e-05 0.000145
GO:0006950 response to stress 52.05% (38/73) 0.89 1.2e-05 0.000159
GO:0110165 cellular anatomical entity 83.56% (61/73) 0.47 1.4e-05 0.00018
GO:0010214 seed coat development 8.22% (6/73) 3.52 1.5e-05 0.000186
GO:0009409 response to cold 17.81% (13/73) 2.02 1.6e-05 0.000202
GO:0045655 regulation of monocyte differentiation 2.74% (2/73) 8.06 2.1e-05 0.000247
GO:0045657 positive regulation of monocyte differentiation 2.74% (2/73) 8.06 2.1e-05 0.000247
GO:0097011 cellular response to granulocyte macrophage colony-stimulating factor stimulus 2.74% (2/73) 8.06 2.1e-05 0.000247
GO:0097012 response to granulocyte macrophage colony-stimulating factor 2.74% (2/73) 8.06 2.1e-05 0.000247
GO:0051749 indole acetic acid carboxyl methyltransferase activity 2.74% (2/73) 8.06 2.1e-05 0.000247
GO:0010089 xylem development 8.22% (6/73) 3.44 2e-05 0.00025
GO:0031224 intrinsic component of membrane 26.03% (19/73) 1.5 2.3e-05 0.000274
GO:0051254 positive regulation of RNA metabolic process 19.18% (14/73) 1.86 2.4e-05 0.000287
GO:0008194 UDP-glycosyltransferase activity 10.96% (8/73) 2.75 2.5e-05 0.000291
GO:0005575 cellular_component 83.56% (61/73) 0.45 2.6e-05 0.000301
GO:0005576 extracellular region 17.81% (13/73) 1.94 2.8e-05 0.000325
GO:0009833 plant-type primary cell wall biogenesis 4.11% (3/73) 5.61 3.3e-05 0.000373
GO:0050826 response to freezing 6.85% (5/73) 3.78 3.3e-05 0.000378
GO:0035278 miRNA-mediated gene silencing by inhibition of translation 2.74% (2/73) 7.74 3.4e-05 0.000381
GO:0048382 mesendoderm development 2.74% (2/73) 7.74 3.4e-05 0.000381
GO:0030510 regulation of BMP signaling pathway 4.11% (3/73) 5.56 3.6e-05 0.000395
GO:0043170 macromolecule metabolic process 43.84% (32/73) 0.97 3.7e-05 0.000399
GO:0003824 catalytic activity 56.16% (41/73) 0.77 3.9e-05 0.000424
GO:0010557 positive regulation of macromolecule biosynthetic process 19.18% (14/73) 1.79 4.1e-05 0.000439
GO:0019748 secondary metabolic process 17.81% (13/73) 1.87 4.6e-05 0.000483
GO:0016757 glycosyltransferase activity 12.33% (9/73) 2.42 4.5e-05 0.000485
GO:0032703 negative regulation of interleukin-2 production 2.74% (2/73) 7.48 5.1e-05 0.000531
GO:0060710 chorio-allantoic fusion 2.74% (2/73) 7.48 5.1e-05 0.000531
GO:1900030 regulation of pectin biosynthetic process 2.74% (2/73) 7.48 5.1e-05 0.000531
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 19.18% (14/73) 1.75 5.8e-05 0.000591
GO:0010395 rhamnogalacturonan I metabolic process 4.11% (3/73) 5.29 6.3e-05 0.000645
GO:0030579 ubiquitin-dependent SMAD protein catabolic process 2.74% (2/73) 7.26 7.2e-05 0.000716
GO:0070911 global genome nucleotide-excision repair 2.74% (2/73) 7.26 7.2e-05 0.000716
GO:0045577 regulation of B cell differentiation 2.74% (2/73) 7.26 7.2e-05 0.000716
GO:0010191 mucilage metabolic process 6.85% (5/73) 3.52 7.9e-05 0.000786
GO:0010192 mucilage biosynthetic process 5.48% (4/73) 4.15 8.1e-05 0.000792
GO:0090100 positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway 4.11% (3/73) 5.16 8.4e-05 0.000818
GO:0014065 phosphatidylinositol 3-kinase signaling 2.74% (2/73) 7.06 9.6e-05 0.000913
GO:0043491 protein kinase B signaling 2.74% (2/73) 7.06 9.6e-05 0.000913
GO:1904245 regulation of polynucleotide adenylyltransferase activity 2.74% (2/73) 7.06 9.6e-05 0.000913
GO:0003674 molecular_function 80.82% (59/73) 0.44 0.000102 0.000967
GO:0016020 membrane 49.32% (36/73) 0.81 0.000106 0.001
GO:0052546 cell wall pectin metabolic process 5.48% (4/73) 4.02 0.000113 0.001049
GO:0032885 regulation of polysaccharide biosynthetic process 5.48% (4/73) 4.02 0.000113 0.001049
GO:0040007 growth 17.81% (13/73) 1.72 0.00013 0.001203
GO:0098588 bounding membrane of organelle 21.92% (16/73) 1.49 0.000137 0.001255
GO:0010400 rhamnogalacturonan I side chain metabolic process 2.74% (2/73) 6.74 0.000153 0.001325
GO:0002763 positive regulation of myeloid leukocyte differentiation 2.74% (2/73) 6.74 0.000153 0.001325
GO:0038066 p38MAPK cascade 2.74% (2/73) 6.74 0.000153 0.001325
GO:0045599 negative regulation of fat cell differentiation 2.74% (2/73) 6.74 0.000153 0.001325
GO:0045600 positive regulation of fat cell differentiation 2.74% (2/73) 6.74 0.000153 0.001325
GO:0060712 spongiotrophoblast layer development 2.74% (2/73) 6.74 0.000153 0.001325
GO:0055028 cortical microtubule 5.48% (4/73) 3.93 0.000146 0.001326
GO:0009415 response to water 16.44% (12/73) 1.79 0.000158 0.001357
GO:0031328 positive regulation of cellular biosynthetic process 19.18% (14/73) 1.62 0.000152 0.001371
GO:0007411 axon guidance 4.11% (3/73) 4.87 0.000153 0.001374
GO:0061061 muscle structure development 4.11% (3/73) 4.82 0.00017 0.001452
GO:0010556 regulation of macromolecule biosynthetic process 26.03% (19/73) 1.29 0.000175 0.001487
GO:0032184 SUMO polymer binding 2.74% (2/73) 6.61 0.000187 0.001522
GO:1901347 negative regulation of secondary cell wall biogenesis 2.74% (2/73) 6.61 0.000187 0.001522
GO:1903339 negative regulation of cell wall organization or biogenesis 2.74% (2/73) 6.61 0.000187 0.001522
GO:0005464 UDP-xylose transmembrane transporter activity 2.74% (2/73) 6.61 0.000187 0.001522
GO:0015790 UDP-xylose transmembrane transport 2.74% (2/73) 6.61 0.000187 0.001522
GO:0009891 positive regulation of biosynthetic process 19.18% (14/73) 1.59 0.000182 0.001523
GO:0016021 integral component of membrane 21.92% (16/73) 1.45 0.000181 0.001526
GO:0097485 neuron projection guidance 4.11% (3/73) 4.72 0.000208 0.001682
GO:2000095 regulation of Wnt signaling pathway, planar cell polarity pathway 2.74% (2/73) 6.48 0.000224 0.001751
GO:0021915 neural tube development 2.74% (2/73) 6.48 0.000224 0.001751
GO:0032663 regulation of interleukin-2 production 2.74% (2/73) 6.48 0.000224 0.001751
GO:0051511 negative regulation of unidimensional cell growth 2.74% (2/73) 6.48 0.000224 0.001751
GO:0060485 mesenchyme development 2.74% (2/73) 6.48 0.000224 0.001751
GO:0070371 ERK1 and ERK2 cascade 2.74% (2/73) 6.48 0.000224 0.001751
GO:0035107 appendage morphogenesis 4.11% (3/73) 4.65 0.00024 0.001862
GO:0005881 cytoplasmic microtubule 5.48% (4/73) 3.73 0.000242 0.001867
GO:0006970 response to osmotic stress 17.81% (13/73) 1.62 0.000255 0.001956
GO:0016049 cell growth 15.07% (11/73) 1.82 0.000258 0.001968
GO:0005109 frizzled binding 2.74% (2/73) 6.36 0.000265 0.001976
GO:0038018 Wnt receptor catabolic process 2.74% (2/73) 6.36 0.000265 0.001976
GO:0090175 regulation of establishment of planar polarity 2.74% (2/73) 6.36 0.000265 0.001976
GO:0045661 regulation of myoblast differentiation 2.74% (2/73) 6.36 0.000265 0.001976
GO:0001101 response to acid chemical 16.44% (12/73) 1.71 0.00027 0.002002
GO:0044550 secondary metabolite biosynthetic process 13.7% (10/73) 1.91 0.000302 0.002233
GO:0009574 preprophase band 4.11% (3/73) 4.5 0.000326 0.002394
GO:0019439 aromatic compound catabolic process 9.59% (7/73) 2.42 0.000339 0.002473
GO:0010330 cellulose synthase complex 2.74% (2/73) 6.16 0.000356 0.002556
GO:0033077 T cell differentiation in thymus 2.74% (2/73) 6.16 0.000356 0.002556
GO:0080116 glucuronoxylan glucuronosyltransferase activity 2.74% (2/73) 6.16 0.000356 0.002556
GO:0043565 sequence-specific DNA binding 17.81% (13/73) 1.57 0.000378 0.002701
GO:0043231 intracellular membrane-bounded organelle 54.79% (40/73) 0.65 0.000392 0.002792
GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway 2.74% (2/73) 6.06 0.000406 0.002829
GO:1903846 positive regulation of cellular response to transforming growth factor beta stimulus 2.74% (2/73) 6.06 0.000406 0.002829
GO:0030014 CCR4-NOT complex 2.74% (2/73) 6.06 0.000406 0.002829
GO:0072091 regulation of stem cell proliferation 2.74% (2/73) 6.06 0.000406 0.002829
GO:0048046 apoplast 10.96% (8/73) 2.15 0.000443 0.003071
GO:0009414 response to water deprivation 15.07% (11/73) 1.72 0.000452 0.003116
GO:0032183 SUMO binding 2.74% (2/73) 5.98 0.000459 0.003154
GO:0099402 plant organ development 16.44% (12/73) 1.62 0.000468 0.003199
GO:0030198 extracellular matrix organization 4.11% (3/73) 4.31 0.00048 0.003264
GO:0043062 extracellular structure organization 4.11% (3/73) 4.29 0.000498 0.003366
GO:0044344 cellular response to fibroblast growth factor stimulus 2.74% (2/73) 5.89 0.000516 0.00339
GO:0071774 response to fibroblast growth factor 2.74% (2/73) 5.89 0.000516 0.00339
GO:0090400 stress-induced premature senescence 2.74% (2/73) 5.89 0.000516 0.00339
GO:1904248 regulation of age-related resistance 2.74% (2/73) 5.89 0.000516 0.00339
GO:1904250 positive regulation of age-related resistance 2.74% (2/73) 5.89 0.000516 0.00339
GO:0043227 membrane-bounded organelle 54.79% (40/73) 0.63 0.000508 0.003416
GO:0048856 anatomical structure development 36.99% (27/73) 0.89 0.000549 0.003586
GO:1905177 tracheary element differentiation 4.11% (3/73) 4.24 0.000553 0.003597
GO:1901361 organic cyclic compound catabolic process 9.59% (7/73) 2.29 0.000565 0.00364
GO:0005618 cell wall 15.07% (11/73) 1.69 0.000564 0.00365
GO:2000027 regulation of animal organ morphogenesis 2.74% (2/73) 5.82 0.000576 0.003696
GO:0010411 xyloglucan metabolic process 4.11% (3/73) 4.21 0.000592 0.00376
GO:0090287 regulation of cellular response to growth factor stimulus 4.11% (3/73) 4.21 0.000592 0.00376
GO:0035019 somatic stem cell population maintenance 2.74% (2/73) 5.74 0.00064 0.003953
GO:0071559 response to transforming growth factor beta 2.74% (2/73) 5.74 0.00064 0.003953
GO:0071560 cellular response to transforming growth factor beta stimulus 2.74% (2/73) 5.74 0.00064 0.003953
GO:0090058 metaxylem development 2.74% (2/73) 5.74 0.00064 0.003953
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway 4.11% (3/73) 4.17 0.000632 0.003999
GO:0032502 developmental process 45.21% (33/73) 0.74 0.000636 0.004005
GO:0002761 regulation of myeloid leukocyte differentiation 2.74% (2/73) 5.67 0.000706 0.004344
GO:0009266 response to temperature stimulus 17.81% (13/73) 1.47 0.000719 0.004405
GO:0001570 vasculogenesis 2.74% (2/73) 5.61 0.000776 0.004709
GO:0039020 pronephric nephron tubule development 2.74% (2/73) 5.61 0.000776 0.004709
GO:0043229 intracellular organelle 58.9% (43/73) 0.56 0.000809 0.004889
GO:0006109 regulation of carbohydrate metabolic process 8.22% (6/73) 2.44 0.000849 0.005019
GO:0032801 receptor catabolic process 2.74% (2/73) 5.54 0.000849 0.005039
GO:0050728 negative regulation of inflammatory response 2.74% (2/73) 5.54 0.000849 0.005039
GO:0010455 positive regulation of cell fate commitment 2.74% (2/73) 5.54 0.000849 0.005039
GO:0009620 response to fungus 16.44% (12/73) 1.52 0.00084 0.005053
GO:0050896 response to stimulus 57.53% (42/73) 0.57 0.000866 0.005101
GO:0030312 external encapsulating structure 15.07% (11/73) 1.6 0.0009 0.005278
GO:0043226 organelle 58.9% (43/73) 0.55 0.000928 0.005373
GO:0048103 somatic stem cell division 2.74% (2/73) 5.48 0.000925 0.005374
GO:0061158 3'-UTR-mediated mRNA destabilization 2.74% (2/73) 5.48 0.000925 0.005374
GO:1901700 response to oxygen-containing compound 31.51% (23/73) 0.95 0.000987 0.005689
GO:0045638 negative regulation of myeloid cell differentiation 2.74% (2/73) 5.42 0.001004 0.005689
GO:0072009 nephron epithelium development 2.74% (2/73) 5.42 0.001004 0.005689
GO:0072080 nephron tubule development 2.74% (2/73) 5.42 0.001004 0.005689
GO:0010981 regulation of cell wall macromolecule metabolic process 2.74% (2/73) 5.42 0.001004 0.005689
GO:0031226 intrinsic component of plasma membrane 8.22% (6/73) 2.38 0.001067 0.006025
GO:0009056 catabolic process 20.55% (15/73) 1.27 0.001089 0.006069
GO:0016760 cellulose synthase (UDP-forming) activity 2.74% (2/73) 5.36 0.001086 0.00608
GO:0072699 protein localization to cortical microtubule cytoskeleton 2.74% (2/73) 5.36 0.001086 0.00608
GO:0009888 tissue development 12.33% (9/73) 1.79 0.001159 0.006407
GO:0031326 regulation of cellular biosynthetic process 26.03% (19/73) 1.07 0.001156 0.006419
GO:0072073 kidney epithelium development 2.74% (2/73) 5.31 0.001172 0.006453
GO:0045598 regulation of fat cell differentiation 2.74% (2/73) 5.26 0.00126 0.006858
GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening 2.74% (2/73) 5.26 0.00126 0.006858
GO:0071889 14-3-3 protein binding 2.74% (2/73) 5.26 0.00126 0.006858
GO:0044248 cellular catabolic process 17.81% (13/73) 1.37 0.001355 0.007202
GO:0060216 definitive hemopoiesis 2.74% (2/73) 5.21 0.001352 0.007213
GO:0071320 cellular response to cAMP 2.74% (2/73) 5.21 0.001352 0.007213
GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2.74% (2/73) 5.21 0.001352 0.007213
GO:0010215 cellulose microfibril organization 2.74% (2/73) 5.21 0.001352 0.007213
GO:0051173 positive regulation of nitrogen compound metabolic process 19.18% (14/73) 1.3 0.001346 0.007297
GO:0009505 plant-type cell wall 9.59% (7/73) 2.07 0.001398 0.007401
GO:0016759 cellulose synthase activity 2.74% (2/73) 5.16 0.001447 0.007457
GO:0046332 SMAD binding 2.74% (2/73) 5.16 0.001447 0.007457
GO:0048015 phosphatidylinositol-mediated signaling 2.74% (2/73) 5.16 0.001447 0.007457
GO:0048017 inositol lipid-mediated signaling 2.74% (2/73) 5.16 0.001447 0.007457
GO:0072697 protein localization to cell cortex 2.74% (2/73) 5.16 0.001447 0.007457
GO:0044238 primary metabolic process 49.32% (36/73) 0.63 0.001416 0.00747
GO:0005874 microtubule 6.85% (5/73) 2.6 0.001445 0.00759
GO:0090059 protoxylem development 2.74% (2/73) 5.11 0.001545 0.007902
GO:0090398 cellular senescence 2.74% (2/73) 5.11 0.001545 0.007902
GO:0031175 neuron projection development 4.11% (3/73) 3.72 0.001573 0.008019
GO:0031440 regulation of mRNA 3'-end processing 2.74% (2/73) 5.06 0.001646 0.008325
GO:2000737 negative regulation of stem cell differentiation 2.74% (2/73) 5.06 0.001646 0.008325
GO:0046872 metal ion binding 23.29% (17/73) 1.11 0.001699 0.008532
GO:0009889 regulation of biosynthetic process 26.03% (19/73) 1.02 0.001694 0.008538
GO:2000050 regulation of non-canonical Wnt signaling pathway 2.74% (2/73) 5.02 0.00175 0.008754
GO:0010087 phloem or xylem histogenesis 8.22% (6/73) 2.23 0.001798 0.008962
GO:1901834 regulation of deadenylation-independent decapping of nuclear-transcribed mRNA 1.37% (1/73) 9.06 0.001868 0.00921
GO:1901835 positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA 1.37% (1/73) 9.06 0.001868 0.00921
GO:0051211 anisotropic cell growth 2.74% (2/73) 4.98 0.001857 0.009223
GO:0006355 regulation of DNA-templated transcription 20.55% (15/73) 1.19 0.001907 0.009371
GO:0032881 regulation of polysaccharide metabolic process 5.48% (4/73) 2.93 0.001928 0.00944
GO:1903506 regulation of nucleic acid-templated transcription 20.55% (15/73) 1.19 0.001961 0.009568
GO:2001141 regulation of RNA biosynthetic process 20.55% (15/73) 1.19 0.001972 0.009587
GO:0072089 stem cell proliferation 2.74% (2/73) 4.86 0.002196 0.010526
GO:0061326 renal tubule development 2.74% (2/73) 4.86 0.002196 0.010526
GO:0043169 cation binding 23.29% (17/73) 1.07 0.002175 0.010536
GO:0044089 positive regulation of cellular component biogenesis 5.48% (4/73) 2.88 0.002188 0.010563
GO:0016758 hexosyltransferase activity 8.22% (6/73) 2.16 0.002289 0.010934
GO:0050864 regulation of B cell activation 2.74% (2/73) 4.82 0.002315 0.011021
GO:0009651 response to salt stress 13.7% (10/73) 1.53 0.002334 0.011071
GO:0007568 aging 4.11% (3/73) 3.51 0.002376 0.011192
GO:0043622 cortical microtubule organization 4.11% (3/73) 3.51 0.002376 0.011192
GO:0045646 regulation of erythrocyte differentiation 2.74% (2/73) 4.78 0.002438 0.011326
GO:0071385 cellular response to glucocorticoid stimulus 2.74% (2/73) 4.78 0.002438 0.011326
GO:0031155 regulation of reproductive fruiting body development 2.74% (2/73) 4.78 0.002438 0.011326
GO:0031325 positive regulation of cellular metabolic process 19.18% (14/73) 1.21 0.00242 0.011358
GO:0017015 regulation of transforming growth factor beta receptor signaling pathway 2.74% (2/73) 4.74 0.002563 0.011592
GO:1903844 regulation of cellular response to transforming growth factor beta stimulus 2.74% (2/73) 4.74 0.002563 0.011592
GO:0045639 positive regulation of myeloid cell differentiation 2.74% (2/73) 4.74 0.002563 0.011592
GO:0051403 stress-activated MAPK cascade 2.74% (2/73) 4.74 0.002563 0.011592
GO:0071384 cellular response to corticosteroid stimulus 2.74% (2/73) 4.74 0.002563 0.011592
GO:1902107 positive regulation of leukocyte differentiation 2.74% (2/73) 4.74 0.002563 0.011592
GO:1903708 positive regulation of hemopoiesis 2.74% (2/73) 4.74 0.002563 0.011592
GO:0048759 xylem vessel member cell differentiation 2.74% (2/73) 4.74 0.002563 0.011592
GO:0008171 O-methyltransferase activity 4.11% (3/73) 3.46 0.002622 0.011822
GO:0035925 mRNA 3'-UTR AU-rich region binding 2.74% (2/73) 4.71 0.002691 0.011896
GO:0045619 regulation of lymphocyte differentiation 2.74% (2/73) 4.71 0.002691 0.011896
GO:0071356 cellular response to tumor necrosis factor 2.74% (2/73) 4.71 0.002691 0.011896
GO:0090436 leaf pavement cell development 2.74% (2/73) 4.71 0.002691 0.011896
GO:1901575 organic substance catabolic process 17.81% (13/73) 1.26 0.002652 0.011916
GO:0010604 positive regulation of macromolecule metabolic process 19.18% (14/73) 1.2 0.002679 0.011998
GO:0010037 response to carbon dioxide 4.11% (3/73) 3.44 0.002725 0.012008
GO:0042538 hyperosmotic salinity response 5.48% (4/73) 2.78 0.00278 0.01221
GO:0031098 stress-activated protein kinase signaling cascade 2.74% (2/73) 4.67 0.002822 0.012356
GO:0007389 pattern specification process 10.96% (8/73) 1.73 0.00284 0.012393
GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening 2.74% (2/73) 4.64 0.002956 0.01282
GO:0075260 regulation of spore-bearing organ development 2.74% (2/73) 4.64 0.002956 0.01282
GO:0007155 cell adhesion 4.11% (3/73) 3.38 0.003048 0.013177
GO:0099080 supramolecular complex 9.59% (7/73) 1.87 0.003063 0.0132
GO:0071222 cellular response to lipopolysaccharide 2.74% (2/73) 4.61 0.003093 0.013246
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2.74% (2/73) 4.61 0.003093 0.013246
GO:0016763 pentosyltransferase activity 4.11% (3/73) 3.37 0.003104 0.013251
GO:0099513 polymeric cytoskeletal fiber 6.85% (5/73) 2.34 0.003118 0.013268
GO:0030217 T cell differentiation 2.74% (2/73) 4.57 0.003233 0.013548
GO:0071383 cellular response to steroid hormone stimulus 2.74% (2/73) 4.57 0.003233 0.013548
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity 2.74% (2/73) 4.57 0.003233 0.013548
GO:0009531 secondary cell wall 2.74% (2/73) 4.57 0.003233 0.013548
GO:0043255 regulation of carbohydrate biosynthetic process 5.48% (4/73) 2.72 0.003218 0.013653
GO:0019438 aromatic compound biosynthetic process 15.07% (11/73) 1.37 0.003307 0.013813
GO:0043112 receptor metabolic process 2.74% (2/73) 4.54 0.003376 0.014061
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport 2.74% (2/73) 4.51 0.003522 0.014623
GO:0005886 plasma membrane 26.03% (19/73) 0.93 0.003611 0.014949
GO:0009423 chorismate biosynthetic process 2.74% (2/73) 4.48 0.003671 0.015013
GO:1903085 regulation of sinapate ester biosynthetic process 2.74% (2/73) 4.48 0.003671 0.015013
GO:1903086 negative regulation of sinapate ester biosynthetic process 2.74% (2/73) 4.48 0.003671 0.015013
GO:0009101 glycoprotein biosynthetic process 2.74% (2/73) 4.48 0.003671 0.015013
GO:0031086 nuclear-transcribed mRNA catabolic process, deadenylation-independent decay 1.37% (1/73) 8.06 0.003732 0.015037
GO:0102822 quercetin 3'-O-methyltransferase activity 1.37% (1/73) 8.06 0.003732 0.015037
GO:0008725 DNA-3-methyladenine glycosylase activity 1.37% (1/73) 8.06 0.003732 0.015037
GO:0043733 DNA-3-methylbase glycosylase activity 1.37% (1/73) 8.06 0.003732 0.015037
GO:0062104 pumilio-response element binding 1.37% (1/73) 8.06 0.003732 0.015037
GO:0099081 supramolecular polymer 6.85% (5/73) 2.27 0.003882 0.015551
GO:0099512 supramolecular fiber 6.85% (5/73) 2.27 0.003882 0.015551
GO:1900377 negative regulation of secondary metabolite biosynthetic process 2.74% (2/73) 4.42 0.003977 0.015838
GO:0098609 cell-cell adhesion 2.74% (2/73) 4.42 0.003977 0.015838
GO:0046417 chorismate metabolic process 2.74% (2/73) 4.39 0.004134 0.016416
GO:0005338 nucleotide-sugar transmembrane transporter activity 2.74% (2/73) 4.34 0.004457 0.017496
GO:0009413 response to flooding 2.74% (2/73) 4.34 0.004457 0.017496
GO:0048829 root cap development 2.74% (2/73) 4.34 0.004457 0.017496
GO:0010035 response to inorganic substance 20.55% (15/73) 1.06 0.004441 0.017582
GO:0051252 regulation of RNA metabolic process 20.55% (15/73) 1.05 0.004763 0.018642
GO:0001818 negative regulation of cytokine production 2.74% (2/73) 4.28 0.004792 0.018702
GO:2000112 regulation of cellular macromolecule biosynthetic process 8.22% (6/73) 1.94 0.004806 0.018706
GO:0009867 jasmonic acid mediated signaling pathway 5.48% (4/73) 2.56 0.004859 0.018857
GO:0034612 response to tumor necrosis factor 2.74% (2/73) 4.23 0.005138 0.019881
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 5.48% (4/73) 2.53 0.005244 0.020234
GO:1900384 regulation of flavonol biosynthetic process 2.74% (2/73) 4.21 0.005315 0.020393
GO:2001006 regulation of cellulose biosynthetic process 2.74% (2/73) 4.21 0.005315 0.020393
GO:0015780 nucleotide-sugar transmembrane transport 2.74% (2/73) 4.18 0.005495 0.020849
GO:0044380 protein localization to cytoskeleton 2.74% (2/73) 4.18 0.005495 0.020849
GO:0072698 protein localization to microtubule cytoskeleton 2.74% (2/73) 4.18 0.005495 0.020849
GO:0031122 cytoplasmic microtubule organization 4.11% (3/73) 3.08 0.005478 0.02096
GO:0045616 regulation of keratinocyte differentiation 1.37% (1/73) 7.48 0.005592 0.020987
GO:1902172 regulation of keratinocyte apoptotic process 1.37% (1/73) 7.48 0.005592 0.020987
GO:0042349 guiding stereospecific synthesis activity 1.37% (1/73) 7.48 0.005592 0.020987
GO:1901599 (-)-pinoresinol biosynthetic process 1.37% (1/73) 7.48 0.005592 0.020987
GO:0050678 regulation of epithelial cell proliferation 2.74% (2/73) 4.16 0.005677 0.021132
GO:1902105 regulation of leukocyte differentiation 2.74% (2/73) 4.16 0.005677 0.021132
GO:0015020 glucuronosyltransferase activity 2.74% (2/73) 4.16 0.005677 0.021132
GO:0010675 regulation of cellular carbohydrate metabolic process 5.48% (4/73) 2.48 0.005805 0.021549
GO:0052325 cell wall pectin biosynthetic process 2.74% (2/73) 4.11 0.006051 0.022339
GO:0042110 T cell activation 2.74% (2/73) 4.11 0.006051 0.022339
GO:0017145 stem cell division 2.74% (2/73) 4.06 0.006435 0.023568
GO:0032950 regulation of beta-glucan metabolic process 2.74% (2/73) 4.06 0.006435 0.023568
GO:0032951 regulation of beta-glucan biosynthetic process 2.74% (2/73) 4.06 0.006435 0.023568
GO:0005635 nuclear envelope 4.11% (3/73) 2.99 0.006485 0.023685
GO:0035195 miRNA-mediated gene silencing 2.74% (2/73) 4.02 0.006831 0.024882
GO:0031225 anchored component of membrane 5.48% (4/73) 2.41 0.006867 0.024948
GO:0006972 hyperosmotic response 5.48% (4/73) 2.4 0.007046 0.025462
GO:0042542 response to hydrogen peroxide 5.48% (4/73) 2.4 0.007046 0.025462
GO:0003905 alkylbase DNA N-glycosylase activity 1.37% (1/73) 7.06 0.00745 0.02678
GO:0102910 dirigent protein activity 1.37% (1/73) 7.06 0.00745 0.02678
GO:2000736 regulation of stem cell differentiation 2.74% (2/73) 3.94 0.007654 0.027441
GO:0003677 DNA binding 17.81% (13/73) 1.08 0.007683 0.027474
GO:0097435 supramolecular fiber organization 5.48% (4/73) 2.36 0.007791 0.027716
GO:0030865 cortical cytoskeleton organization 4.11% (3/73) 2.89 0.007791 0.027786
GO:0045597 positive regulation of cell differentiation 5.48% (4/73) 2.36 0.007856 0.027872
GO:0010119 regulation of stomatal movement 6.85% (5/73) 2.01 0.008105 0.028684
GO:0071219 cellular response to molecule of bacterial origin 2.74% (2/73) 3.87 0.008299 0.029292
GO:0035017 cuticle pattern formation 2.74% (2/73) 3.86 0.008519 0.029839
GO:0005200 structural constituent of cytoskeleton 2.74% (2/73) 3.86 0.008519 0.029839
GO:0010091 trichome branching 4.11% (3/73) 2.85 0.008498 0.029917
GO:0050727 regulation of inflammatory response 2.74% (2/73) 3.82 0.008968 0.031329
GO:0030775 glucuronoxylan 4-O-methyltransferase activity 1.37% (1/73) 6.74 0.009304 0.032174
GO:0006307 DNA dealkylation involved in DNA repair 1.37% (1/73) 6.74 0.009304 0.032174
GO:0072708 response to sorbitol 1.37% (1/73) 6.74 0.009304 0.032174
GO:0009893 positive regulation of metabolic process 19.18% (14/73) 0.99 0.00926 0.032268
GO:0043650 dicarboxylic acid biosynthetic process 2.74% (2/73) 3.78 0.009426 0.032353
GO:0001664 G protein-coupled receptor binding 2.74% (2/73) 3.78 0.009426 0.032353
GO:0043207 response to external biotic stimulus 27.4% (20/73) 0.77 0.009418 0.032488
GO:0070063 RNA polymerase binding 2.74% (2/73) 3.76 0.00966 0.03307
GO:0000976 transcription cis-regulatory region binding 12.33% (9/73) 1.32 0.009834 0.033582
GO:0001067 transcription regulatory region nucleic acid binding 12.33% (9/73) 1.31 0.010054 0.034249
GO:0019219 regulation of nucleobase-containing compound metabolic process 20.55% (15/73) 0.93 0.010146 0.034304
GO:0035264 multicellular organism growth 2.74% (2/73) 3.72 0.010134 0.034349
GO:0051384 response to glucocorticoid 2.74% (2/73) 3.72 0.010134 0.034349
GO:0051591 response to cAMP 2.74% (2/73) 3.71 0.010375 0.034992
GO:0080091 regulation of raffinose metabolic process 2.74% (2/73) 3.69 0.010618 0.035637
GO:0071375 cellular response to peptide hormone stimulus 2.74% (2/73) 3.69 0.010618 0.035637
GO:0045637 regulation of myeloid cell differentiation 2.74% (2/73) 3.66 0.011112 0.037205
GO:0009607 response to biotic stimulus 27.4% (20/73) 0.75 0.011281 0.037677
GO:1990837 sequence-specific double-stranded DNA binding 12.33% (9/73) 1.28 0.011316 0.037703
GO:0031323 regulation of cellular metabolic process 27.4% (20/73) 0.75 0.011376 0.037717
GO:0042285 xylosyltransferase activity 2.74% (2/73) 3.64 0.011363 0.037767
GO:0007507 heart development 2.74% (2/73) 3.62 0.011617 0.038238
GO:0050779 RNA destabilization 2.74% (2/73) 3.62 0.011617 0.038238
GO:0061157 mRNA destabilization 2.74% (2/73) 3.62 0.011617 0.038238
GO:0080187 floral organ senescence 2.74% (2/73) 3.61 0.011873 0.038986
GO:0030098 lymphocyte differentiation 2.74% (2/73) 3.59 0.012131 0.039739
GO:0009800 cinnamic acid biosynthetic process 2.74% (2/73) 3.57 0.012392 0.040208
GO:1901957 regulation of cutin biosynthetic process 2.74% (2/73) 3.57 0.012392 0.040208
GO:0031960 response to corticosteroid 2.74% (2/73) 3.57 0.012392 0.040208
GO:0071322 cellular response to carbohydrate stimulus 2.74% (2/73) 3.57 0.012392 0.040208
GO:0032897 negative regulation of viral transcription 1.37% (1/73) 6.26 0.013001 0.041984
GO:0034314 Arp2/3 complex-mediated actin nucleation 1.37% (1/73) 6.26 0.013001 0.041984
GO:0008168 methyltransferase activity 5.48% (4/73) 2.14 0.013181 0.042465
GO:1901362 organic cyclic compound biosynthetic process 15.07% (11/73) 1.09 0.013609 0.043742
GO:0051249 regulation of lymphocyte activation 2.74% (2/73) 3.49 0.013733 0.044035
GO:0046658 anchored component of plasma membrane 4.11% (3/73) 2.58 0.013931 0.044566
GO:0071244 cellular response to carbon dioxide 2.74% (2/73) 3.48 0.014008 0.044709
GO:0080090 regulation of primary metabolic process 26.03% (19/73) 0.75 0.014133 0.045001
GO:0016741 transferase activity, transferring one-carbon groups 5.48% (4/73) 2.08 0.014872 0.046702
GO:2000051 negative regulation of non-canonical Wnt signaling pathway 1.37% (1/73) 6.06 0.014845 0.046723
GO:0033319 UDP-D-xylose metabolic process 1.37% (1/73) 6.06 0.014845 0.046723
GO:0033320 UDP-D-xylose biosynthetic process 1.37% (1/73) 6.06 0.014845 0.046723
GO:0048040 UDP-glucuronate decarboxylase activity 1.37% (1/73) 6.06 0.014845 0.046723
GO:0005885 Arp2/3 protein complex 1.37% (1/73) 6.06 0.014845 0.046723
GO:0000904 cell morphogenesis involved in differentiation 8.22% (6/73) 1.58 0.015248 0.047774
GO:1903131 mononuclear cell differentiation 2.74% (2/73) 3.41 0.015421 0.048204
GO:0010453 regulation of cell fate commitment 2.74% (2/73) 3.38 0.016003 0.049908
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_116 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_168 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_179 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_193 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_195 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_253 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_4 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_61 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_63 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_68 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (73) (download table)

InterPro Domains

GO Terms

Family Terms