SOLTUB.AGRIA.G00000001112

Description : 40S ribosomal protein S9, putative

Gene families : OG_02_0000412 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000001112
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_16

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000013069	No alias	40S ribosomal protein S9, putative	0.02	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000017612	No alias	40S ribosomal protein S9, putative	0.02	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000013069	No alias	40S ribosomal protein S9, putative	0.02	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000017612	No alias	40S ribosomal protein S9, putative	0.02	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000013069	No alias	40S ribosomal protein S9, putative	0.02	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000017612	No alias	40S ribosomal protein S9, putative	0.02	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
CC	GO:0000228	nuclear chromosome	IEA	AHRD
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0002181	cytoplasmic translation	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003735	structural constituent of ribosome	IEA	AHRD
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005694	chromosome	None	Extended
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005737	cytoplasm	None	Extended
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006412	translation	None	Extended
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006450	regulation of translational fidelity	None	Extended
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008284	positive regulation of cell population proliferation	IEA	AHRD
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
CC	GO:0022627	cytosolic small ribosomal subunit	IEA	AHRD
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030490	maturation of SSU-rRNA	None	Extended
CC	GO:0030684	preribosome	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
CC	GO:0031982	vesicle	IEA	AHRD
CC	GO:0032040	small-subunit processome	IEA	AHRD
CC	GO:0032838	plasma membrane bounded cell projection cytoplasm	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034250	positive regulation of cellular amide metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
MF	GO:0045182	translation regulator activity	IEA	AHRD
CC	GO:0045202	synapse	IEA	AHRD
BP	GO:0045727	positive regulation of translation	None	Extended
BP	GO:0045903	positive regulation of translational fidelity	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0097014	ciliary plasm	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0099568	cytoplasmic region	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended
MF	GO:1990932	5.8S rRNA binding	IEA	AHRD
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000054	ribosomal subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0000138	Golgi trans cisterna	IEP	Predict GO terms from Neighborhoods
BP	GO:0000303	response to superoxide	IEP	Predict GO terms from Neighborhoods
BP	GO:0000305	response to oxygen radical	IEP	Predict GO terms from Neighborhoods
BP	GO:0000338	protein deneddylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0000349	generation of catalytic spliceosome for first transesterification step	IEP	Predict GO terms from Neighborhoods
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	Predict GO terms from Neighborhoods
MF	GO:0000386	second spliceosomal transesterification activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000390	spliceosomal complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000429	carbon catabolite regulation of transcription from RNA polymerase II promoter	IEP	Predict GO terms from Neighborhoods
BP	GO:0000430	regulation of transcription from RNA polymerase II promoter by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0000433	carbon catabolite repression of transcription from RNA polymerase II promoter by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0000460	maturation of 5.8S rRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0000470	maturation of LSU-rRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0000491	small nucleolar ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000492	box C/D snoRNP assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0000785	chromatin	IEP	Predict GO terms from Neighborhoods
BP	GO:0000957	mitochondrial RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000958	mitochondrial mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000965	mitochondrial RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0001056	RNA polymerase III activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001501	skeletal system development	IEP	Predict GO terms from Neighborhoods
CC	GO:0001651	dense fibrillar component	IEP	Predict GO terms from Neighborhoods
BP	GO:0001732	formation of cytoplasmic translation initiation complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0001758	retinal dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0001882	nucleoside binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001889	liver development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001936	regulation of endothelial cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002072	optic cup morphogenesis involved in camera-type eye development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002138	retinoic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002931	response to ischemia	IEP	Predict GO terms from Neighborhoods
BP	GO:0002943	tRNA dihydrouridine synthesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004028	3-chloroallyl aldehyde dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004029	aldehyde dehydrogenase (NAD+) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004165	delta(3)-delta(2)-enoyl-CoA isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004300	enoyl-CoA hydratase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004654	polyribonucleotide nucleotidyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004745	NAD-retinol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005501	retinoid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005638	lamin filament	IEP	Predict GO terms from Neighborhoods
CC	GO:0005666	RNA polymerase III complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005684	U2-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005690	U4atac snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005736	RNA polymerase I complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005774	vacuolar membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005797	Golgi medial cisterna	IEP	Predict GO terms from Neighborhoods
CC	GO:0005840	ribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005882	intermediate filament	IEP	Predict GO terms from Neighborhoods
BP	GO:0006040	amino sugar metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006041	glucosamine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006067	ethanol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006110	regulation of glycolytic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006117	acetaldehyde metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006140	regulation of nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006360	transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
BP	GO:0006383	transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
BP	GO:0006386	termination of RNA polymerase III transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006776	vitamin A metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006809	nitric oxide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006914	autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0007338	single fertilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007420	brain development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007494	midgut development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007498	mesoderm development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007569	obsolete cell aging	IEP	Predict GO terms from Neighborhoods
BP	GO:0007584	response to nutrient	IEP	Predict GO terms from Neighborhoods
BP	GO:0007626	locomotory behavior	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0008180	COP9 signalosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0008296	3'-5'-exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008631	intrinsic apoptotic signaling pathway in response to oxidative stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0008692	3-hydroxybutyryl-CoA epimerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008774	acetaldehyde dehydrogenase (acetylating) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008957	phenylacetaldehyde dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009304	tRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0009448	gamma-aminobutyric acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009449	gamma-aminobutyric acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009663	plasmodesma organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009749	response to glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0010171	body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010172	embryonic body morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010215	cellulose microfibril organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010387	COP9 signalosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010799	regulation of peptidyl-threonine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010801	negative regulation of peptidyl-threonine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010939	regulation of necrotic cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0010981	regulation of cell wall macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0014032	neural crest cell development	IEP	Predict GO terms from Neighborhoods
CC	GO:0014069	postsynaptic density	IEP	Predict GO terms from Neighborhoods
BP	GO:0014706	striated muscle tissue development	IEP	Predict GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0016236	macroautophagy	IEP	Predict GO terms from Neighborhoods
MF	GO:0016262	protein N-acetylglucosaminyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016331	morphogenesis of embryonic epithelium	IEP	Predict GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
MF	GO:0016856	racemase and epimerase activity, acting on hydroxy acids and derivatives	IEP	Predict GO terms from Neighborhoods
MF	GO:0016863	intramolecular oxidoreductase activity, transposing C=C bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016918	retinal binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0017122	protein N-acetylglucosaminyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0017148	negative regulation of translation	IEP	Predict GO terms from Neighborhoods
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0018479	benzaldehyde dehydrogenase (NAD+) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018992	germ-line sex determination	IEP	Predict GO terms from Neighborhoods
MF	GO:0019115	benzaldehyde dehydrogenase [NAD(P)+] activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019145	aminobutyraldehyde dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0021515	cell differentiation in spinal cord	IEP	Predict GO terms from Neighborhoods
BP	GO:0021522	spinal cord motor neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0021768	nucleus accumbens development	IEP	Predict GO terms from Neighborhoods
BP	GO:0021915	neural tube development	IEP	Predict GO terms from Neighborhoods
BP	GO:0021983	pituitary gland development	IEP	Predict GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0030099	myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030218	erythrocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030326	embryonic limb morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030389	fructosamine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030392	fructosamine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030522	intracellular receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0030534	adult behavior	IEP	Predict GO terms from Neighborhoods
MF	GO:0030621	U4 snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030622	U4atac snRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030902	hindbrain development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031016	pancreas development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031053	primary miRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031428	box C/D RNP complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031672	A band	IEP	Predict GO terms from Neighborhoods
CC	GO:0031985	Golgi cisterna	IEP	Predict GO terms from Neighborhoods
BP	GO:0032496	response to lipopolysaccharide	IEP	Predict GO terms from Neighborhoods
MF	GO:0032549	ribonucleoside binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032570	response to progesterone	IEP	Predict GO terms from Neighborhoods
BP	GO:0032648	regulation of interferon-beta production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032728	positive regulation of interferon-beta production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032988	ribonucleoprotein complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0033137	negative regulation of peptidyl-serine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033189	response to vitamin A	IEP	Predict GO terms from Neighborhoods
CC	GO:0033290	eukaryotic 48S preinitiation complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0033291	eukaryotic 80S initiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033750	ribosome localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034249	negative regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034395	regulation of transcription from RNA polymerase II promoter in response to iron	IEP	Predict GO terms from Neighborhoods
BP	GO:0034396	negative regulation of transcription from RNA polymerase II promoter in response to iron	IEP	Predict GO terms from Neighborhoods
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034463	90S preribosome assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0034511	U3 snoRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0034512	box C/D RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035020	regulation of Rac protein signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0035094	response to nicotine	IEP	Predict GO terms from Neighborhoods
BP	GO:0035108	limb morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0035113	embryonic appendage morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0035115	embryonic forelimb morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0035136	forelimb morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0035278	miRNA-mediated gene silencing by inhibition of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035634	response to stilbenoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0035799	ureter maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0036296	response to increased oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0040021	hermaphrodite germ-line sex determination	IEP	Predict GO terms from Neighborhoods
BP	GO:0040022	feminization of hermaphroditic germ-line	IEP	Predict GO terms from Neighborhoods
BP	GO:0040024	dauer larval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0042255	ribosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0042256	mature ribosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0042472	inner ear morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042474	middle ear morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042573	retinoic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042574	retinal metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042588	zymogen granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0042788	polysomal ribosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0042797	tRNA transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
BP	GO:0042904	9-cis-retinoic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042905	9-cis-retinoic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043009	chordate embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	Predict GO terms from Neighborhoods
BP	GO:0043470	regulation of carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043878	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0043981	histone H4-K5 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043982	histone H4-K8 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043984	histone H4-K16 acetylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0044692	exoribonuclease activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045013	carbon catabolite repression of transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045014	carbon catabolite repression of transcription by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0045471	response to ethanol	IEP	Predict GO terms from Neighborhoods
BP	GO:0045652	regulation of megakaryocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045793	positive regulation of cell size	IEP	Predict GO terms from Neighborhoods
BP	GO:0046015	regulation of transcription by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0046209	nitric oxide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048015	phosphatidylinositol-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0048017	inositol lipid-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0048149	behavioral response to ethanol	IEP	Predict GO terms from Neighborhoods
BP	GO:0048312	intracellular distribution of mitochondria	IEP	Predict GO terms from Neighborhoods
BP	GO:0048318	axial mesoderm development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048384	retinoic acid receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0048385	regulation of retinoic acid receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0048386	positive regulation of retinoic acid receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0048513	animal organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048545	response to steroid hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:0048566	embryonic digestive tract development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048568	embryonic organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048598	embryonic morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048732	gland development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048738	cardiac muscle tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048799	animal organ maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048857	neural nucleus development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048863	stem cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050885	neuromuscular process controlling balance	IEP	Predict GO terms from Neighborhoods
BP	GO:0051248	negative regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0051287	NAD binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051385	response to mineralocorticoid	IEP	Predict GO terms from Neighborhoods
MF	GO:0051880	G-quadruplex DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0055093	response to hyperoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0060004	reflex	IEP	Predict GO terms from Neighborhoods
BP	GO:0060013	righting reflex	IEP	Predict GO terms from Neighborhoods
BP	GO:0060166	olfactory pit development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060324	face development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060544	regulation of necroptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0060964	regulation of miRNA-mediated gene silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0061087	positive regulation of histone H3-K27 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0061158	3'-UTR-mediated mRNA destabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Predict GO terms from Neighborhoods
BP	GO:0061984	catabolite repression	IEP	Predict GO terms from Neighborhoods
BP	GO:0061985	carbon catabolite repression	IEP	Predict GO terms from Neighborhoods
BP	GO:0061986	negative regulation of transcription by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0061987	negative regulation of transcription from RNA polymerase II promoter by glucose	IEP	Predict GO terms from Neighborhoods
BP	GO:0062098	regulation of programmed necrotic cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0070122	obsolete isopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070324	thyroid hormone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070384	Harderian gland development	IEP	Predict GO terms from Neighborhoods
MF	GO:0070403	NAD+ binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0070404	NADH binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0070992	translation initiation complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071005	U2-type precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071011	precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071020	post-spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071021	U2-type post-spliceosomal complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071300	cellular response to retinoic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0071478	cellular response to radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071482	cellular response to light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0080182	histone H3-K4 trimethylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0090242	retinoic acid receptor signaling pathway involved in somitogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090313	regulation of protein targeting to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0090315	negative regulation of protein targeting to membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0097363	protein O-GlcNAc transferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0098552	side of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098554	cytoplasmic side of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098556	cytoplasmic side of rough endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098562	cytoplasmic side of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098588	bounding membrane of organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0099572	postsynaptic specialization	IEP	Predict GO terms from Neighborhoods
MF	GO:0106373	3-deoxyglucosone dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0106413	dihydrouridine synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0110095	cellular detoxification of aldehyde	IEP	Predict GO terms from Neighborhoods
BP	GO:0120162	positive regulation of cold-induced thermogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:1900037	regulation of cellular response to hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:1900038	negative regulation of cellular response to hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:1900370	positive regulation of post-transcriptional gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:1900542	regulation of purine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901654	response to ketone	IEP	Predict GO terms from Neighborhoods
BP	GO:1903578	regulation of ATP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904044	response to aldosterone	IEP	Predict GO terms from Neighborhoods
BP	GO:1904638	response to resveratrol	IEP	Predict GO terms from Neighborhoods
BP	GO:1904639	cellular response to resveratrol	IEP	Predict GO terms from Neighborhoods
BP	GO:1905214	regulation of RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1905216	positive regulation of RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1990403	embryonic brain development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000637	positive regulation of miRNA-mediated gene silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:2001009	regulation of plant-type cell wall cellulose biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001912	Ribosomal_S4/S9_N	7	59
IPR005710	Ribosomal_S4/S9_euk/arc	7	161
IPR002942	S4_RNA-bd	104	147

External Links

No external refs found!

SOLTUB.AGRIA.G00000001112

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation