SOLTUB.AGRIA.G00000015541


Description : 40S ribosomal protein S15a


Gene families : OG_02_0000247 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000015541
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_16


Type GO Term Name Evidence Source
BP GO:0002181 cytoplasmic translation IEA AHRD
MF GO:0003735 structural constituent of ribosome IEA AHRD
CC GO:0005618 cell wall IEA AHRD
CC GO:0005774 vacuolar membrane IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0007420 brain development IEA AHRD
BP GO:0008284 positive regulation of cell population proliferation IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
BP GO:0009615 response to virus IEA AHRD
CC GO:0022627 cytosolic small ribosomal subunit IEA AHRD
BP GO:0030218 erythrocyte differentiation IEA AHRD
CC GO:0042788 polysomal ribosome IEA AHRD
BP GO:0043009 chordate embryonic development IEA AHRD
BP GO:0045787 positive regulation of cell cycle IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Predict GO terms from Neighborhoods
BP GO:0000338 protein deneddylation IEP Predict GO terms from Neighborhoods
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000470 maturation of LSU-rRNA IEP Predict GO terms from Neighborhoods
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0000492 box C/D snoRNP assembly IEP Predict GO terms from Neighborhoods
CC GO:0000794 condensed nuclear chromosome IEP Predict GO terms from Neighborhoods
MF GO:0001221 transcription coregulator binding IEP Predict GO terms from Neighborhoods
MF GO:0001223 transcription coactivator binding IEP Predict GO terms from Neighborhoods
BP GO:0001501 skeletal system development IEP Predict GO terms from Neighborhoods
BP GO:0001503 ossification IEP Predict GO terms from Neighborhoods
BP GO:0001523 retinoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0001568 blood vessel development IEP Predict GO terms from Neighborhoods
CC GO:0001651 dense fibrillar component IEP Predict GO terms from Neighborhoods
MF GO:0001758 retinal dehydrogenase activity IEP Predict GO terms from Neighborhoods
BP GO:0001822 kidney development IEP Predict GO terms from Neighborhoods
BP GO:0001889 liver development IEP Predict GO terms from Neighborhoods
BP GO:0001936 regulation of endothelial cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0001947 heart looping IEP Predict GO terms from Neighborhoods
BP GO:0002072 optic cup morphogenesis involved in camera-type eye development IEP Predict GO terms from Neighborhoods
BP GO:0002138 retinoic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0002931 response to ischemia IEP Predict GO terms from Neighborhoods
BP GO:0003008 system process IEP Predict GO terms from Neighborhoods
BP GO:0003143 embryonic heart tube morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0004029 aldehyde dehydrogenase (NAD+) activity IEP Predict GO terms from Neighborhoods
MF GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity IEP Predict GO terms from Neighborhoods
MF GO:0004745 NAD-retinol dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0005501 retinoid binding IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005690 U4atac snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
BP GO:0006040 amino sugar metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006067 ethanol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006117 acetaldehyde metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006417 regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0006450 regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0006775 fat-soluble vitamin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006776 vitamin A metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007338 single fertilization IEP Predict GO terms from Neighborhoods
BP GO:0007494 midgut development IEP Predict GO terms from Neighborhoods
BP GO:0007498 mesoderm development IEP Predict GO terms from Neighborhoods
BP GO:0007605 sensory perception of sound IEP Predict GO terms from Neighborhoods
CC GO:0008180 COP9 signalosome IEP Predict GO terms from Neighborhoods
MF GO:0008289 lipid binding IEP Predict GO terms from Neighborhoods
BP GO:0008631 intrinsic apoptotic signaling pathway in response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:0008637 apoptotic mitochondrial changes IEP Predict GO terms from Neighborhoods
MF GO:0008774 acetaldehyde dehydrogenase (acetylating) activity IEP Predict GO terms from Neighborhoods
MF GO:0008957 phenylacetaldehyde dehydrogenase activity IEP Predict GO terms from Neighborhoods
BP GO:0009448 gamma-aminobutyric acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009449 gamma-aminobutyric acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009585 red, far-red light phototransduction IEP Predict GO terms from Neighborhoods
BP GO:0009954 proximal/distal pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010387 COP9 signalosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0010608 post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010628 positive regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0014032 neural crest cell development IEP Predict GO terms from Neighborhoods
CC GO:0014069 postsynaptic density IEP Predict GO terms from Neighborhoods
BP GO:0014706 striated muscle tissue development IEP Predict GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016236 macroautophagy IEP Predict GO terms from Neighborhoods
BP GO:0016331 morphogenesis of embryonic epithelium IEP Predict GO terms from Neighborhoods
MF GO:0016918 retinal binding IEP Predict GO terms from Neighborhoods
MF GO:0017022 myosin binding IEP Predict GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0018479 benzaldehyde dehydrogenase (NAD+) activity IEP Predict GO terms from Neighborhoods
MF GO:0019003 GDP binding IEP Predict GO terms from Neighborhoods
MF GO:0019115 benzaldehyde dehydrogenase [NAD(P)+] activity IEP Predict GO terms from Neighborhoods
MF GO:0019145 aminobutyraldehyde dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0019840 isoprenoid binding IEP Predict GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0021515 cell differentiation in spinal cord IEP Predict GO terms from Neighborhoods
BP GO:0021522 spinal cord motor neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0021768 nucleus accumbens development IEP Predict GO terms from Neighborhoods
BP GO:0021915 neural tube development IEP Predict GO terms from Neighborhoods
BP GO:0021953 central nervous system neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0021983 pituitary gland development IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0022625 cytosolic large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0030324 lung development IEP Predict GO terms from Neighborhoods
BP GO:0030326 embryonic limb morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0030389 fructosamine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030392 fructosamine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030490 maturation of SSU-rRNA IEP Predict GO terms from Neighborhoods
MF GO:0030515 snoRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0030534 adult behavior IEP Predict GO terms from Neighborhoods
MF GO:0030621 U4 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0030622 U4atac snRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Predict GO terms from Neighborhoods
CC GO:0030687 preribosome, large subunit precursor IEP Predict GO terms from Neighborhoods
BP GO:0030902 hindbrain development IEP Predict GO terms from Neighborhoods
BP GO:0031016 pancreas development IEP Predict GO terms from Neighborhoods
BP GO:0031100 animal organ regeneration IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
BP GO:0031397 negative regulation of protein ubiquitination IEP Predict GO terms from Neighborhoods
CC GO:0031428 box C/D RNP complex IEP Predict GO terms from Neighborhoods
BP GO:0031960 response to corticosteroid IEP Predict GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Predict GO terms from Neighborhoods
BP GO:0032355 response to estradiol IEP Predict GO terms from Neighborhoods
BP GO:0032526 response to retinoic acid IEP Predict GO terms from Neighborhoods
BP GO:0032570 response to progesterone IEP Predict GO terms from Neighborhoods
CC GO:0032838 plasma membrane bounded cell projection cytoplasm IEP Predict GO terms from Neighborhoods
BP GO:0032986 protein-DNA complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0033189 response to vitamin A IEP Predict GO terms from Neighborhoods
BP GO:0033273 response to vitamin IEP Predict GO terms from Neighborhoods
CC GO:0033291 eukaryotic 80S initiation complex IEP Predict GO terms from Neighborhoods
BP GO:0033574 response to testosterone IEP Predict GO terms from Neighborhoods
BP GO:0034248 regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034463 90S preribosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0034511 U3 snoRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0034512 box C/D RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035094 response to nicotine IEP Predict GO terms from Neighborhoods
BP GO:0035107 appendage morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0035108 limb morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0035113 embryonic appendage morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0035115 embryonic forelimb morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0035136 forelimb morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0035634 response to stilbenoid IEP Predict GO terms from Neighborhoods
BP GO:0035799 ureter maturation IEP Predict GO terms from Neighborhoods
BP GO:0036296 response to increased oxygen levels IEP Predict GO terms from Neighborhoods
BP GO:0042273 ribosomal large subunit biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042472 inner ear morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042474 middle ear morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0042562 hormone binding IEP Predict GO terms from Neighborhoods
BP GO:0042573 retinoic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042574 retinal metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042904 9-cis-retinoic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042905 9-cis-retinoic acid metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0043878 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
CC GO:0045202 synapse IEP Predict GO terms from Neighborhoods
BP GO:0045292 mRNA cis splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0045903 positive regulation of translational fidelity IEP Predict GO terms from Neighborhoods
BP GO:0046348 amino sugar catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predict GO terms from Neighborhoods
BP GO:0046677 response to antibiotic IEP Predict GO terms from Neighborhoods
BP GO:0048149 behavioral response to ethanol IEP Predict GO terms from Neighborhoods
BP GO:0048318 axial mesoderm development IEP Predict GO terms from Neighborhoods
BP GO:0048384 retinoic acid receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0048385 regulation of retinoic acid receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0048386 positive regulation of retinoic acid receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0048545 response to steroid hormone IEP Predict GO terms from Neighborhoods
BP GO:0048565 digestive tract development IEP Predict GO terms from Neighborhoods
BP GO:0048566 embryonic digestive tract development IEP Predict GO terms from Neighborhoods
BP GO:0048568 embryonic organ development IEP Predict GO terms from Neighborhoods
BP GO:0048598 embryonic morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048732 gland development IEP Predict GO terms from Neighborhoods
BP GO:0048738 cardiac muscle tissue development IEP Predict GO terms from Neighborhoods
BP GO:0048799 animal organ maturation IEP Predict GO terms from Neighborhoods
BP GO:0048857 neural nucleus development IEP Predict GO terms from Neighborhoods
BP GO:0048864 stem cell development IEP Predict GO terms from Neighborhoods
BP GO:0050678 regulation of epithelial cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0050727 regulation of inflammatory response IEP Predict GO terms from Neighborhoods
BP GO:0050877 nervous system process IEP Predict GO terms from Neighborhoods
BP GO:0050885 neuromuscular process controlling balance IEP Predict GO terms from Neighborhoods
BP GO:0050905 neuromuscular process IEP Predict GO terms from Neighborhoods
BP GO:0050954 sensory perception of mechanical stimulus IEP Predict GO terms from Neighborhoods
MF GO:0051117 ATPase binding IEP Predict GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051385 response to mineralocorticoid IEP Predict GO terms from Neighborhoods
BP GO:0051438 regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051444 negative regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0055093 response to hyperoxia IEP Predict GO terms from Neighborhoods
MF GO:0055105 ubiquitin-protein transferase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0055106 ubiquitin-protein transferase regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0060004 reflex IEP Predict GO terms from Neighborhoods
BP GO:0060013 righting reflex IEP Predict GO terms from Neighborhoods
BP GO:0060166 olfactory pit development IEP Predict GO terms from Neighborhoods
BP GO:0060324 face development IEP Predict GO terms from Neighborhoods
BP GO:0060537 muscle tissue development IEP Predict GO terms from Neighborhoods
BP GO:0060562 epithelial tube morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0070122 obsolete isopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0070180 large ribosomal subunit rRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0070300 phosphatidic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0070324 thyroid hormone binding IEP Predict GO terms from Neighborhoods
BP GO:0070384 Harderian gland development IEP Predict GO terms from Neighborhoods
MF GO:0070403 NAD+ binding IEP Predict GO terms from Neighborhoods
MF GO:0070404 NADH binding IEP Predict GO terms from Neighborhoods
CC GO:0070992 translation initiation complex IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071236 cellular response to antibiotic IEP Predict GO terms from Neighborhoods
BP GO:0071300 cellular response to retinoic acid IEP Predict GO terms from Neighborhoods
BP GO:0071398 cellular response to fatty acid IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0072716 response to actinomycin D IEP Predict GO terms from Neighborhoods
BP GO:0072717 cellular response to actinomycin D IEP Predict GO terms from Neighborhoods
BP GO:0090242 retinoic acid receptor signaling pathway involved in somitogenesis IEP Predict GO terms from Neighborhoods
CC GO:0097014 ciliary plasm IEP Predict GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:0097193 intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0097421 liver regeneration IEP Predict GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0098552 side of membrane IEP Predict GO terms from Neighborhoods
CC GO:0098554 cytoplasmic side of endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
CC GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
CC GO:0098562 cytoplasmic side of membrane IEP Predict GO terms from Neighborhoods
CC GO:0099568 cytoplasmic region IEP Predict GO terms from Neighborhoods
CC GO:0099572 postsynaptic specialization IEP Predict GO terms from Neighborhoods
MF GO:0106373 3-deoxyglucosone dehydrogenase activity IEP Predict GO terms from Neighborhoods
BP GO:0110095 cellular detoxification of aldehyde IEP Predict GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:1901654 response to ketone IEP Predict GO terms from Neighborhoods
BP GO:1901798 positive regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902882 regulation of response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:1903051 negative regulation of proteolysis involved in protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP Predict GO terms from Neighborhoods
BP GO:1904044 response to aldosterone IEP Predict GO terms from Neighborhoods
BP GO:1904638 response to resveratrol IEP Predict GO terms from Neighborhoods
BP GO:1904639 cellular response to resveratrol IEP Predict GO terms from Neighborhoods
BP GO:1904666 regulation of ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:1904667 negative regulation of ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:1905214 regulation of RNA binding IEP Predict GO terms from Neighborhoods
BP GO:1905216 positive regulation of RNA binding IEP Predict GO terms from Neighborhoods
BP GO:1990641 response to iron ion starvation IEP Predict GO terms from Neighborhoods
MF GO:1990932 5.8S rRNA binding IEP Predict GO terms from Neighborhoods
MF GO:1990948 ubiquitin ligase inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000630 Ribosomal_S8 464 492
IPR035987 Ribosomal_S8_sf 586 631
IPR035987 Ribosomal_S8_sf 426 493
IPR008972 Cupredoxin 487 592
IPR004314 Neprosin 152 370
IPR001117 Cu-oxidase 491 592
No external refs found!