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  5. SOLTUB.AGRIA.G00000017787

SOLTUB.AGRIA.G00000017787


Description : RNA-binding family protein, putative isoform 1


Gene families : OG_02_0014806 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000017787
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_130


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP Predict GO terms from Neighborhoods
BP GO:0000154 rRNA modification IEP Predict GO terms from Neighborhoods
MF GO:0000166 nucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0000373 Group II intron splicing IEP Predict GO terms from Neighborhoods
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predict GO terms from Neighborhoods
CC GO:0000427 plastid-encoded plastid RNA polymerase complex IEP Predict GO terms from Neighborhoods
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0000910 cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0000917 division septum assembly IEP Predict GO terms from Neighborhoods
CC GO:0000935 division septum IEP Predict GO terms from Neighborhoods
BP GO:0000959 mitochondrial RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0002103 endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) IEP Predict GO terms from Neighborhoods
MF GO:0003674 molecular_function IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003697 single-stranded DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003727 single-stranded RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003916 DNA topoisomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Predict GO terms from Neighborhoods
MF GO:0003924 GTPase activity IEP Predict GO terms from Neighborhoods
MF GO:0004396 hexokinase activity IEP Predict GO terms from Neighborhoods
MF GO:0005488 binding IEP Predict GO terms from Neighborhoods
MF GO:0005525 GTP binding IEP Predict GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005739 mitochondrion IEP Predict GO terms from Neighborhoods
BP GO:0006000 fructose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006225 UDP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006241 CTP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Predict GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006417 regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0006457 protein folding IEP Predict GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006996 organelle organization IEP Predict GO terms from Neighborhoods
MF GO:0008187 poly-pyrimidine tract binding IEP Predict GO terms from Neighborhoods
MF GO:0008266 poly(U) RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008865 fructokinase activity IEP Predict GO terms from Neighborhoods
MF GO:0009041 uridylate kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0009133 nucleoside diphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009138 pyrimidine nucleoside diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009139 pyrimidine nucleoside diphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009188 ribonucleoside diphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009193 pyrimidine ribonucleoside diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009194 pyrimidine ribonucleoside diphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0009295 nucleoid IEP Predict GO terms from Neighborhoods
BP GO:0009451 RNA modification IEP Predict GO terms from Neighborhoods
CC GO:0009507 chloroplast IEP Predict GO terms from Neighborhoods
CC GO:0009508 plastid chromosome IEP Predict GO terms from Neighborhoods
CC GO:0009528 plastid inner membrane IEP Predict GO terms from Neighborhoods
CC GO:0009532 plastid stroma IEP Predict GO terms from Neighborhoods
CC GO:0009535 chloroplast thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0009543 chloroplast thylakoid lumen IEP Predict GO terms from Neighborhoods
CC GO:0009570 chloroplast stroma IEP Predict GO terms from Neighborhoods
BP GO:0009637 response to blue light IEP Predict GO terms from Neighborhoods
CC GO:0009654 photosystem II oxygen evolving complex IEP Predict GO terms from Neighborhoods
BP GO:0009657 plastid organization IEP Predict GO terms from Neighborhoods
BP GO:0009658 chloroplast organization IEP Predict GO terms from Neighborhoods
BP GO:0009662 etioplast organization IEP Predict GO terms from Neighborhoods
CC GO:0009706 chloroplast inner membrane IEP Predict GO terms from Neighborhoods
BP GO:0009895 negative regulation of catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009902 chloroplast relocation IEP Predict GO terms from Neighborhoods
BP GO:0009987 cellular process IEP Predict GO terms from Neighborhoods
BP GO:0010020 chloroplast fission IEP Predict GO terms from Neighborhoods
BP GO:0010207 photosystem II assembly IEP Predict GO terms from Neighborhoods
CC GO:0010319 stromule IEP Predict GO terms from Neighborhoods
BP GO:0010468 regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010608 post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Predict GO terms from Neighborhoods
CC GO:0016465 chaperonin ATPase complex IEP Predict GO terms from Neighborhoods
BP GO:0016553 base conversion or substitution editing IEP Predict GO terms from Neighborhoods
BP GO:0016554 cytidine to uridine editing IEP Predict GO terms from Neighborhoods
BP GO:0016556 mRNA modification IEP Predict GO terms from Neighborhoods
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016853 isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predict GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0019001 guanyl nucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0019200 carbohydrate kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Predict GO terms from Neighborhoods
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019750 chloroplast localization IEP Predict GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0019866 organelle inner membrane IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
CC GO:0030288 outer membrane-bounded periplasmic space IEP Predict GO terms from Neighborhoods
CC GO:0030428 cell septum IEP Predict GO terms from Neighborhoods
CC GO:0030880 RNA polymerase complex IEP Predict GO terms from Neighborhoods
CC GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex IEP Predict GO terms from Neighborhoods
BP GO:0031329 regulation of cellular catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031330 negative regulation of cellular catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0031969 chloroplast membrane IEP Predict GO terms from Neighborhoods
CC GO:0031977 thylakoid lumen IEP Predict GO terms from Neighborhoods
CC GO:0031978 plastid thylakoid lumen IEP Predict GO terms from Neighborhoods
BP GO:0032205 negative regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
BP GO:0032210 regulation of telomere maintenance via telomerase IEP Predict GO terms from Neighborhoods
BP GO:0032211 negative regulation of telomere maintenance via telomerase IEP Predict GO terms from Neighborhoods
BP GO:0032506 cytokinetic process IEP Predict GO terms from Neighborhoods
BP GO:0032543 mitochondrial translation IEP Predict GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0032561 guanyl ribonucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0033862 UMP kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0034248 regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0034335 DNA negative supercoiling activity IEP Predict GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predict GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Predict GO terms from Neighborhoods
BP GO:0042026 protein refolding IEP Predict GO terms from Neighborhoods
CC GO:0042170 plastid membrane IEP Predict GO terms from Neighborhoods
CC GO:0042597 periplasmic space IEP Predict GO terms from Neighborhoods
CC GO:0042644 chloroplast nucleoid IEP Predict GO terms from Neighborhoods
CC GO:0042646 plastid nucleoid IEP Predict GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0042750 hibernation IEP Predict GO terms from Neighborhoods
BP GO:0042793 plastid transcription IEP Predict GO terms from Neighborhoods
MF GO:0043024 ribosomal small subunit binding IEP Predict GO terms from Neighborhoods
BP GO:0043093 FtsZ-dependent cytokinesis IEP Predict GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Predict GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043335 protein unfolding IEP Predict GO terms from Neighborhoods
BP GO:0043487 regulation of RNA stability IEP Predict GO terms from Neighborhoods
BP GO:0043489 RNA stabilization IEP Predict GO terms from Neighborhoods
BP GO:0043572 plastid fission IEP Predict GO terms from Neighborhoods
MF GO:0043621 protein self-association IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
MF GO:0044183 protein folding chaperone IEP Predict GO terms from Neighborhoods
BP GO:0044210 'de novo' CTP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045036 protein targeting to chloroplast IEP Predict GO terms from Neighborhoods
BP GO:0045037 protein import into chloroplast stroma IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0046036 CTP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046048 UDP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046940 nucleoside monophosphate phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0048285 organelle fission IEP Predict GO terms from Neighborhoods
BP GO:0048564 photosystem I assembly IEP Predict GO terms from Neighborhoods
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0050518 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity IEP Predict GO terms from Neighborhoods
BP GO:0051252 regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051258 protein polymerization IEP Predict GO terms from Neighborhoods
BP GO:0051644 plastid localization IEP Predict GO terms from Neighborhoods
BP GO:0051667 establishment of plastid localization IEP Predict GO terms from Neighborhoods
CC GO:0055035 plastid thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0061077 chaperone-mediated protein folding IEP Predict GO terms from Neighborhoods
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0070181 small ribosomal subunit rRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0070567 cytidylyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0072596 establishment of protein localization to chloroplast IEP Predict GO terms from Neighborhoods
BP GO:0080156 mitochondrial mRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090529 cell septum assembly IEP Predict GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Predict GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Predict GO terms from Neighborhoods
BP GO:0097659 nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
CC GO:0140535 intracellular protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:1900864 mitochondrial RNA modification IEP Predict GO terms from Neighborhoods
BP GO:1900865 chloroplast RNA modification IEP Predict GO terms from Neighborhoods
BP GO:1900871 chloroplast mRNA modification IEP Predict GO terms from Neighborhoods
BP GO:1901259 chloroplast rRNA processing IEP Predict GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Predict GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:1902369 negative regulation of RNA catabolic process IEP Predict GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Predict GO terms from Neighborhoods
BP GO:1903533 regulation of protein targeting IEP Predict GO terms from Neighborhoods
BP GO:1904215 regulation of protein import into chloroplast stroma IEP Predict GO terms from Neighborhoods
BP GO:1904216 positive regulation of protein import into chloroplast stroma IEP Predict GO terms from Neighborhoods
BP GO:1904357 negative regulation of telomere maintenance via telomere lengthening IEP Predict GO terms from Neighborhoods
CC GO:1990220 GroEL-GroES complex IEP Predict GO terms from Neighborhoods
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000279 negative regulation of DNA biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR035979 RBD_domain_sf 185 266
No external refs found!