SOLTUB.AGRIA.G00000017878

Description : Metalloendoproteinase 1-MMP

Gene families : OG_02_0000587 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000017878
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_192

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
BP	GO:0002237	response to molecule of bacterial origin	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004222	metalloendopeptidase activity	IEA	AHRD
MF	GO:0005488	binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005615	extracellular space	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006508	proteolysis	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0007565	female pregnancy	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
BP	GO:0009056	catabolic process	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009612	response to mechanical stimulus	IEA	AHRD
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEA	AHRD
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009753	response to jasmonic acid	IEA	AHRD
BP	GO:0009892	negative regulation of metabolic process	IEA	AHRD
BP	GO:0009893	positive regulation of metabolic process	IEA	AHRD
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010468	regulation of gene expression	IEA	AHRD
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0014070	response to organic cyclic compound	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0030198	extracellular matrix organization	IEA	AHRD
BP	GO:0030334	regulation of cell migration	None	Extended
BP	GO:0030335	positive regulation of cell migration	IEA	AHRD
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031225	anchored component of membrane	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031668	cellular response to extracellular stimulus	IEA	AHRD
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032496	response to lipopolysaccharide	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034097	response to cytokine	None	Extended
BP	GO:0034612	response to tumor necrosis factor	IEA	AHRD
BP	GO:0040007	growth	None	Extended
BP	GO:0040012	regulation of locomotion	None	Extended
BP	GO:0040017	positive regulation of locomotion	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042698	ovulation cycle	IEA	AHRD
BP	GO:0042742	defense response to bacterium	IEA	AHRD
BP	GO:0043062	extracellular structure organization	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043200	response to amino acid	IEA	AHRD
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0044703	multi-organism reproductive process	None	Extended
BP	GO:0044706	multi-multicellular organism process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046686	response to cadmium ion	IEA	AHRD
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048513	animal organ development	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	IEA	AHRD
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	IEA	AHRD
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050727	regulation of inflammatory response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0070555	response to interleukin-1	IEA	AHRD
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	IEA	AHRD
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071345	cellular response to cytokine stimulus	IEA	AHRD
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080186	developmental vegetative growth	IEA	AHRD
BP	GO:0098542	defense response to other organism	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:0150077	regulation of neuroinflammatory response	IEA	AHRD
BP	GO:1900055	regulation of leaf senescence	None	Extended
BP	GO:1900056	negative regulation of leaf senescence	IEA	AHRD
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901699	cellular response to nitrogen compound	IEA	AHRD
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901701	cellular response to oxygen-containing compound	IEA	AHRD
BP	GO:1902531	regulation of intracellular signal transduction	IEA	AHRD
BP	GO:2000028	regulation of photoperiodism, flowering	IEA	AHRD
BP	GO:2000145	regulation of cell motility	None	Extended
BP	GO:2000147	positive regulation of cell motility	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005887	integral component of plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006260	DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006261	DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Predict GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Predict GO terms from Neighborhoods
CC	GO:0009330	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0009682	induced systemic resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010026	trichome differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0015935	small ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0030176	integral component of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031301	integral component of organelle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0042023	DNA endoreduplication	IEP	Predict GO terms from Neighborhoods
BP	GO:0044786	cell cycle DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0050826	response to freezing	IEP	Predict GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Predict GO terms from Neighborhoods
BP	GO:0071446	cellular response to salicylic acid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900150	regulation of defense response to fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900426	positive regulation of defense response to bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:1902288	regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
BP	GO:1902290	positive regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
MF	GO:1990841	promoter-specific chromatin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000022	regulation of jasmonic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000031	regulation of salicylic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001818	Pept_M10_metallopeptidase	159	315
IPR036365	PGBD-like_sf	66	129
IPR002477	Peptidoglycan-bd-like	64	119

External Links

No external refs found!

SOLTUB.AGRIA.G00000017878

Expression Profile

Co-expression Networks

Functional Annotation