SOLTUB.AGRIA.G00000019122

Description : CCR4-NOT transcription complex subunit 9

Gene families : OG_02_0001406 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000019122
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_30

Type	GO Term	Name	Evidence	Source
CC	GO:0000932	P-body	IEA	AHRD
BP	GO:0001932	regulation of protein phosphorylation	None	Extended
BP	GO:0001934	positive regulation of protein phosphorylation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	None	Extended
MF	GO:0003713	transcription coactivator activity	None	Extended
MF	GO:0005102	signaling receptor binding	None	Extended
MF	GO:0005154	epidermal growth factor receptor binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007166	cell surface receptor signaling pathway	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009967	positive regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010562	positive regulation of phosphorus metabolic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	IEA	AHRD
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010647	positive regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019221	cytokine-mediated signaling pathway	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0019900	kinase binding	IEA	AHRD
MF	GO:0019904	protein domain specific binding	IEA	AHRD
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023056	positive regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
CC	GO:0030015	CCR4-NOT core complex	IEA	AHRD
MF	GO:0030374	nuclear receptor coactivator activity	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
BP	GO:0032784	regulation of DNA-templated transcription elongation	None	Extended
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	None	Extended
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033135	regulation of peptidyl-serine phosphorylation	None	Extended
BP	GO:0033138	positive regulation of peptidyl-serine phosphorylation	IEA	AHRD
BP	GO:0033143	regulation of intracellular steroid hormone receptor signaling pathway	None	Extended
BP	GO:0033144	negative regulation of intracellular steroid hormone receptor signaling pathway	None	Extended
BP	GO:0033146	regulation of intracellular estrogen receptor signaling pathway	None	Extended
BP	GO:0033147	negative regulation of intracellular estrogen receptor signaling pathway	IEA	AHRD
CC	GO:0033620	Mei2 nuclear dot complex	IEA	AHRD
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	None	Extended
CC	GO:0035770	ribonucleoprotein granule	None	Extended
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	None	Extended
BP	GO:0042058	regulation of epidermal growth factor receptor signaling pathway	None	Extended
BP	GO:0042325	regulation of phosphorylation	None	Extended
BP	GO:0042327	positive regulation of phosphorylation	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0045742	positive regulation of epidermal growth factor receptor signaling pathway	IEA	AHRD
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045937	positive regulation of phosphate metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0070851	growth factor receptor binding	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901184	regulation of ERBB signaling pathway	None	Extended
BP	GO:1901186	positive regulation of ERBB signaling pathway	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000012	single strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0002230	positive regulation of defense response to virus by host	IEP	Predict GO terms from Neighborhoods
BP	GO:0002244	hematopoietic progenitor cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003845	11-beta-hydroxysteroid dehydrogenase [NAD(P)] activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004303	estradiol 17-beta-dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004529	exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005662	DNA replication factor A complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005797	Golgi medial cisterna	IEP	Predict GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006076	(1->3)-beta-D-glucan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006260	DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006268	DNA unwinding involved in DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006278	RNA-templated DNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006284	base-excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006298	mismatch repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006476	protein deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006706	steroid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007004	telomere maintenance via telomerase	IEP	Predict GO terms from Neighborhoods
MF	GO:0008169	C-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008211	glucocorticoid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008409	5'-3' exonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009856	pollination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010833	telomere maintenance via telomere lengthening	IEP	Predict GO terms from Neighborhoods
BP	GO:0010971	positive regulation of G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0012511	monolayer-surrounded lipid storage body	IEP	Predict GO terms from Neighborhoods
MF	GO:0016229	steroid dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016575	histone deacetylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0016580	Sin3 complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016819	hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016895	exodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
BP	GO:0021895	cerebral cortex neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0021953	central nervous system neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0022622	root system development	IEP	Predict GO terms from Neighborhoods
CC	GO:0030014	CCR4-NOT complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0030795	methyl jasmonate methylesterase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030983	mismatched DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031098	stress-activated protein kinase signaling cascade	IEP	Predict GO terms from Neighborhoods
CC	GO:0031225	anchored component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031937	obsolete positive regulation of chromatin silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0032578	aleurone grain membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0033699	DNA 5'-adenosine monophosphate hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0035067	negative regulation of histone acetylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0035312	5'-3' exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0042162	telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042754	negative regulation of circadian rhythm	IEP	Predict GO terms from Neighborhoods
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043392	negative regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043619	regulation of transcription from RNA polymerase II promoter in response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0043647	inositol phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045666	positive regulation of neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046173	polyol biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0046658	anchored component of plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0047627	adenylylsulfatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050691	regulation of defense response to virus by host	IEP	Predict GO terms from Neighborhoods
BP	GO:0051275	beta-glucan catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051403	stress-activated MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0051595	response to methylglyoxal	IEP	Predict GO terms from Neighborhoods
MF	GO:0052624	2-phytyl-1,4-naphthoquinone methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052793	pectin acetylesterase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070524	11-beta-hydroxysteroid dehydrogenase (NADP+) activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0070822	Sin3-type complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071944	cell periphery	IEP	Predict GO terms from Neighborhoods
MF	GO:0072582	17-beta-hydroxysteroid dehydrogenase (NADP+) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080150	S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0098505	G-rich strand telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0140416	transcription regulator inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140678	molecular function inhibitor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900181	negative regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1901674	regulation of histone H3-K27 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901675	negative regulation of histone H3-K27 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902751	positive regulation of cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
MF	GO:1990165	single-strand break-containing DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000677	regulation of transcription regulatory region DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000678	negative regulation of transcription regulatory region DNA binding	IEP	Predict GO terms from Neighborhoods

No InterPro domains available for this sequence

External Links

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SOLTUB.AGRIA.G00000019122

Expression Profile

Co-expression Networks

Functional Annotation