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  5. SOLTUB.AGRIA.G00000019718

SOLTUB.AGRIA.G00000019718


Description : rRNA-processing protein fcf2


Gene families : OG_02_0019829 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000019718
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_96


Type GO Term Name Evidence Source
BP GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005694 chromosome IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predict GO terms from Neighborhoods
MF GO:0003712 transcription coregulator activity IEP Predict GO terms from Neighborhoods
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004930 G protein-coupled receptor activity IEP Predict GO terms from Neighborhoods
CC GO:0005667 transcription regulator complex IEP Predict GO terms from Neighborhoods
CC GO:0005876 spindle microtubule IEP Predict GO terms from Neighborhoods
CC GO:0005881 cytoplasmic microtubule IEP Predict GO terms from Neighborhoods
BP GO:0006022 aminoglycan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006023 aminoglycan biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006024 glycosaminoglycan biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006029 proteoglycan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0006486 protein glycosylation IEP Predict GO terms from Neighborhoods
BP GO:0006493 protein O-linked glycosylation IEP Predict GO terms from Neighborhoods
BP GO:0006901 vesicle coating IEP Predict GO terms from Neighborhoods
BP GO:0007020 microtubule nucleation IEP Predict GO terms from Neighborhoods
BP GO:0007030 Golgi organization IEP Predict GO terms from Neighborhoods
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0007622 rhythmic behavior IEP Predict GO terms from Neighborhoods
MF GO:0008194 UDP-glycosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008378 galactosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008502 melatonin receptor activity IEP Predict GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009100 glycoprotein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009101 glycoprotein biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009850 auxin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010192 mucilage biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010384 cell wall proteoglycan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010404 cell wall hydroxyproline-rich glycoprotein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010405 arabinogalactan protein metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0010488 UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0010493 Lewis a epitope biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0015020 glucuronosyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0016592 mediator complex IEP Predict GO terms from Neighborhoods
MF GO:0016757 glycosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016758 hexosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0018193 peptidyl-amino acid modification IEP Predict GO terms from Neighborhoods
BP GO:0018208 peptidyl-proline modification IEP Predict GO terms from Neighborhoods
BP GO:0018258 protein O-linked glycosylation via hydroxyproline IEP Predict GO terms from Neighborhoods
BP GO:0019236 response to pheromone IEP Predict GO terms from Neighborhoods
BP GO:0030031 cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0030111 regulation of Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0030166 proteoglycan biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0030177 positive regulation of Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0030178 negative regulation of Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0030203 glycosaminoglycan metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0030426 growth cone IEP Predict GO terms from Neighborhoods
BP GO:0030865 cortical cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0031122 cytoplasmic microtubule organization IEP Predict GO terms from Neighborhoods
CC GO:0031984 organelle subcompartment IEP Predict GO terms from Neighborhoods
BP GO:0032091 negative regulation of protein binding IEP Predict GO terms from Neighborhoods
BP GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032922 circadian regulation of gene expression IEP Predict GO terms from Neighborhoods
CC GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane IEP Predict GO terms from Neighborhoods
BP GO:0034067 protein localization to Golgi apparatus IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035196 miRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0035250 UDP-galactosyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0036064 ciliary basal body IEP Predict GO terms from Neighborhoods
BP GO:0042752 regulation of circadian rhythm IEP Predict GO terms from Neighborhoods
BP GO:0043393 regulation of protein binding IEP Predict GO terms from Neighborhoods
BP GO:0043413 macromolecule glycosylation IEP Predict GO terms from Neighborhoods
BP GO:0043622 cortical microtubule organization IEP Predict GO terms from Neighborhoods
BP GO:0044260 cellular macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044380 protein localization to cytoskeleton IEP Predict GO terms from Neighborhoods
BP GO:0044782 cilium organization IEP Predict GO terms from Neighborhoods
BP GO:0045664 regulation of neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045666 positive regulation of neuron differentiation IEP Predict GO terms from Neighborhoods
MF GO:0047225 acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0048208 COPII vesicle coating IEP Predict GO terms from Neighborhoods
BP GO:0048354 mucilage biosynthetic process involved in seed coat development IEP Predict GO terms from Neighborhoods
BP GO:0048359 mucilage metabolic process involved in seed coat development IEP Predict GO terms from Neighborhoods
BP GO:0048512 circadian behavior IEP Predict GO terms from Neighborhoods
MF GO:0050321 tau-protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0050650 chondroitin sulfate proteoglycan biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0050654 chondroitin sulfate proteoglycan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051100 negative regulation of binding IEP Predict GO terms from Neighborhoods
BP GO:0051225 spindle assembly IEP Predict GO terms from Neighborhoods
CC GO:0055028 cortical microtubule IEP Predict GO terms from Neighborhoods
BP GO:0060271 cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:0060828 regulation of canonical Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0061512 protein localization to cilium IEP Predict GO terms from Neighborhoods
CC GO:0070847 core mediator complex IEP Predict GO terms from Neighborhoods
BP GO:0070848 response to growth factor IEP Predict GO terms from Neighborhoods
BP GO:0070918 small regulatory ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0071363 cellular response to growth factor stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071539 protein localization to centrosome IEP Predict GO terms from Neighborhoods
BP GO:0072698 protein localization to microtubule cytoskeleton IEP Predict GO terms from Neighborhoods
BP GO:0080147 root hair cell development IEP Predict GO terms from Neighborhoods
BP GO:0090263 positive regulation of canonical Wnt signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0090395 plant cell papilla IEP Predict GO terms from Neighborhoods
CC GO:0090397 stigma papilla IEP Predict GO terms from Neighborhoods
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Predict GO terms from Neighborhoods
CC GO:0098791 Golgi apparatus subcompartment IEP Predict GO terms from Neighborhoods
BP GO:0120031 plasma membrane bounded cell projection assembly IEP Predict GO terms from Neighborhoods
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:1900056 negative regulation of leaf senescence IEP Predict GO terms from Neighborhoods
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901800 positive regulation of proteasomal protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902003 regulation of amyloid-beta formation IEP Predict GO terms from Neighborhoods
BP GO:1902004 positive regulation of amyloid-beta formation IEP Predict GO terms from Neighborhoods
BP GO:1902991 regulation of amyloid precursor protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902993 positive regulation of amyloid precursor protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903052 positive regulation of proteolysis involved in protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1904338 regulation of dopaminergic neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:1904340 positive regulation of dopaminergic neuron differentiation IEP Predict GO terms from Neighborhoods
MF GO:1904408 melatonin binding IEP Predict GO terms from Neighborhoods
BP GO:1904956 regulation of midbrain dopaminergic neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:1904958 positive regulation of midbrain dopaminergic neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:1905424 regulation of Wnt-mediated midbrain dopaminergic neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:1905426 positive regulation of Wnt-mediated midbrain dopaminergic neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:1905508 protein localization to microtubule organizing center IEP Predict GO terms from Neighborhoods
BP GO:1905515 non-motile cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:1990089 response to nerve growth factor IEP Predict GO terms from Neighborhoods
BP GO:1990090 cellular response to nerve growth factor stimulus IEP Predict GO terms from Neighborhoods
MF GO:1990714 hydroxyproline O-galactosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:2000050 regulation of non-canonical Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2000052 positive regulation of non-canonical Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR014810 Fcf2_C 66 161
No external refs found!