SOLTUB.AGRIA.G00000020727

Description : Poly(A) polymerase

Gene families : OG_02_0016098 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000020727
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_177

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0000287	magnesium ion binding	IEA	AHRD
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002683	negative regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
BP	GO:0002832	negative regulation of response to biotic stimulus	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	IEA	AHRD
CC	GO:0005849	mRNA cleavage factor complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006378	mRNA polyadenylation	IEA	AHRD
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007129	homologous chromosome pairing at meiosis	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008285	negative regulation of cell population proliferation	IEA	AHRD
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016074	sno(s)RNA metabolic process	None	Extended
CC	GO:0016604	nuclear body	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
MF	GO:0030145	manganese ion binding	IEA	AHRD
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	None	Extended
BP	GO:0031126	sno(s)RNA 3'-end processing	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	None	Extended
BP	GO:0031440	regulation of mRNA 3'-end processing	IEA	AHRD
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032102	negative regulation of response to external stimulus	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0033620	Mei2 nuclear dot complex	IEA	AHRD
BP	GO:0033621	nuclear-transcribed mRNA catabolic process, meiosis-specific transcripts	IEA	AHRD
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	AHRD
BP	GO:0042710	biofilm formation	None	Extended
BP	GO:0043144	sno(s)RNA processing	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043628	small regulatory ncRNA 3'-end processing	None	Extended
BP	GO:0043629	ncRNA polyadenylation	None	Extended
BP	GO:0043631	RNA polyadenylation	None	Extended
BP	GO:0044010	single-species biofilm formation	None	Extended
BP	GO:0044011	single-species biofilm formation on inanimate substrate	IEA	AHRD
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045824	negative regulation of innate immune response	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048366	leaf development	IEA	AHRD
BP	GO:0048449	floral organ formation	None	Extended
BP	GO:0048451	petal formation	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050684	regulation of mRNA processing	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050777	negative regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
MF	GO:0070566	adenylyltransferase activity	None	Extended
BP	GO:0071050	sno(s)RNA polyadenylation	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090605	submerged biofilm formation	None	Extended
BP	GO:0090609	single-species submerged biofilm formation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0098630	aggregation of unicellular organisms	None	Extended
BP	GO:0098743	cell aggregation	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended
BP	GO:1905393	plant organ formation	None	Extended
CC	GO:1990251	nuclear exosome focus	IEA	AHRD
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000054	ribosomal subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000303	response to superoxide	IEP	Predict GO terms from Neighborhoods
BP	GO:0000305	response to oxygen radical	IEP	Predict GO terms from Neighborhoods
CC	GO:0000439	transcription factor TFIIH core complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000460	maturation of 5.8S rRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0000470	maturation of LSU-rRNA	IEP	Predict GO terms from Neighborhoods
CC	GO:0000785	chromatin	IEP	Predict GO terms from Neighborhoods
CC	GO:0000791	euchromatin	IEP	Predict GO terms from Neighborhoods
BP	GO:0002237	response to molecule of bacterial origin	IEP	Predict GO terms from Neighborhoods
BP	GO:0002943	tRNA dihydrouridine synthesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0003849	3-deoxy-7-phosphoheptulonate synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004529	exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004536	deoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005638	lamin filament	IEP	Predict GO terms from Neighborhoods
CC	GO:0005667	transcription regulator complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005797	Golgi medial cisterna	IEP	Predict GO terms from Neighborhoods
CC	GO:0005882	intermediate filament	IEP	Predict GO terms from Neighborhoods
BP	GO:0006110	regulation of glycolytic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006140	regulation of nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006305	DNA alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006306	DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	Predict GO terms from Neighborhoods
BP	GO:0006809	nitric oxide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007569	obsolete cell aging	IEP	Predict GO terms from Neighborhoods
MF	GO:0008296	3'-5'-exodeoxyribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009410	response to xenobiotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009423	chorismate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009554	megasporogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010118	stomatal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0010483	pollen tube reception	IEP	Predict GO terms from Neighborhoods
BP	GO:0010528	regulation of transposition	IEP	Predict GO terms from Neighborhoods
BP	GO:0010529	negative regulation of transposition	IEP	Predict GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0015030	Cajal body	IEP	Predict GO terms from Neighborhoods
MF	GO:0016251	RNA polymerase II general transcription initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016570	histone modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
MF	GO:0016895	exodeoxyribonuclease activity, producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018205	peptidyl-lysine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0019048	modulation by virus of host process	IEP	Predict GO terms from Neighborhoods
CC	GO:0019907	cyclin-dependent protein kinase activating kinase holoenzyme complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0019908	nuclear cyclin-dependent protein kinase holoenzyme complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031047	gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031985	Golgi cisterna	IEP	Predict GO terms from Neighborhoods
CC	GO:0032806	carboxy-terminal domain protein kinase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033750	ribosome localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0035195	miRNA-mediated gene silencing	IEP	Predict GO terms from Neighborhoods
MF	GO:0035197	siRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0035198	miRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035278	miRNA-mediated gene silencing by inhibition of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035821	modulation of process of another organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0042255	ribosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0042256	mature ribosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0042325	regulation of phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0043470	regulation of carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0043680	filiform apparatus	IEP	Predict GO terms from Neighborhoods
BP	GO:0044003	modulation by symbiont of host process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045005	DNA-templated DNA replication maintenance of fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045637	regulation of myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045652	regulation of megakaryocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046209	nitric oxide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046417	chorismate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048533	sporocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051567	histone H3-K9 methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0051880	G-quadruplex DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0060176	regulation of aggregation involved in sorocarp development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061647	histone H3-K9 modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0061980	regulatory RNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0070461	SAGA-type complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0070516	CAK-ERCC2 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0070816	phosphorylation of RNA polymerase II C-terminal domain	IEP	Predict GO terms from Neighborhoods
CC	GO:0070985	transcription factor TFIIK complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071588	hydrogen peroxide mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0080147	root hair cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0097272	ammonium homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0097275	cellular ammonium homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0106413	dihydrouridine synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140223	general transcription initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Predict GO terms from Neighborhoods
CC	GO:0150005	enzyme activator complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1900542	regulation of purine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902288	regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
BP	GO:1902289	negative regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
BP	GO:1903578	regulation of ATP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1904159	megasporocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905623	positive regulation of leaf development	IEP	Predict GO terms from Neighborhoods
BP	GO:1990069	stomatal opening	IEP	Predict GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000024	regulation of leaf development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000071	regulation of defense response by callose deposition	IEP	Predict GO terms from Neighborhoods
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001057	reactive nitrogen species metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007012	PolA_pol_cen_dom	87	148
IPR011068	NuclTrfase_I-like_C	250	376
IPR043519	NT_sf	3	126
IPR007012	PolA_pol_cen_dom	154	246
IPR007010	PolA_pol_RNA-bd_dom	315	383
IPR007010	PolA_pol_RNA-bd_dom	250	306
IPR002934	Polymerase_NTP_transf_dom	6	80

External Links

No external refs found!

SOLTUB.AGRIA.G00000020727

Expression Profile

Co-expression Networks

Functional Annotation