SOLTUB.AGRIA.G00000021051

Description : RNA binding protein

Gene families : OG_02_0019947 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000021051
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_145

Type	GO Term	Name	Evidence	Source
CC	GO:0000785	chromatin	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006378	mRNA polyadenylation	IEA	AHRD
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009553	embryo sac development	IEA	AHRD
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009909	regulation of flower development	None	Extended
BP	GO:0009911	positive regulation of flower development	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031047	gene silencing by RNA	None	Extended
BP	GO:0031048	small non-coding RNA-dependent heterochromatin formation	IEA	AHRD
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043484	regulation of RNA splicing	None	Extended
BP	GO:0043631	RNA polyadenylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEA	AHRD
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048513	animal organ development	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	IEA	AHRD
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048582	positive regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050684	regulation of mRNA processing	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	IEA	AHRD
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000243	positive regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000153	cytoplasmic ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEP	Predict GO terms from Neighborhoods
MF	GO:0000900	mRNA regulatory element binding translation repressor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001555	oocyte growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0001556	oocyte maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001704	formation of primary germ layer	IEP	Predict GO terms from Neighborhoods
BP	GO:0001709	cell fate determination	IEP	Predict GO terms from Neighborhoods
CC	GO:0005819	spindle	IEP	Predict GO terms from Neighborhoods
BP	GO:0010948	negative regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
CC	GO:0017117	single-stranded DNA-dependent ATP-dependent DNA helicase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0017145	stem cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0030217	T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030397	membrane disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0031063	regulation of histone deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031064	negative regulation of histone deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031137	regulation of conjugation with cellular fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0031138	negative regulation of conjugation with cellular fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0031139	positive regulation of conjugation with cellular fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0032069	regulation of nuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032075	positive regulation of nuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0033046	negative regulation of sister chromatid segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033047	regulation of mitotic sister chromatid segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033048	negative regulation of mitotic sister chromatid segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033077	T cell differentiation in thymus	IEP	Predict GO terms from Neighborhoods
CC	GO:0033202	DNA helicase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034612	response to tumor necrosis factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0035019	somatic stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
MF	GO:0035925	mRNA 3'-UTR AU-rich region binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0040019	positive regulation of embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0042110	T cell activation	IEP	Predict GO terms from Neighborhoods
CC	GO:0043186	P granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0043223	cytoplasmic SCF ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0043406	positive regulation of MAP kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044091	membrane biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0044344	cellular response to fibroblast growth factor stimulus	IEP	Predict GO terms from Neighborhoods
MF	GO:0044692	exoribonuclease activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045577	regulation of B cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045598	regulation of fat cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045599	negative regulation of fat cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045619	regulation of lymphocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045786	negative regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045839	negative regulation of mitotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0045841	negative regulation of mitotic metaphase/anaphase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0045930	negative regulation of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0048103	somatic stem cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0048601	oocyte morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050864	regulation of B cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051078	meiotic nuclear membrane disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051081	nuclear membrane disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051446	positive regulation of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051447	negative regulation of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051784	negative regulation of nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051985	negative regulation of chromosome segregation	IEP	Predict GO terms from Neighborhoods
MF	GO:0052793	pectin acetylesterase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060211	regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predict GO terms from Neighborhoods
BP	GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predict GO terms from Neighborhoods
BP	GO:0060216	definitive hemopoiesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060278	regulation of ovulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060280	negative regulation of ovulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060281	regulation of oocyte development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060282	positive regulation of oocyte development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061158	3'-UTR-mediated mRNA destabilization	IEP	Predict GO terms from Neighborhoods
MF	GO:0062104	pumilio-response element binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070371	ERK1 and ERK2 cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0070849	response to epidermal growth factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0071168	protein localization to chromatin	IEP	Predict GO terms from Neighborhoods
BP	GO:0071356	cellular response to tumor necrosis factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0071364	cellular response to epidermal growth factor stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071383	cellular response to steroid hormone stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071384	cellular response to corticosteroid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071385	cellular response to glucocorticoid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071559	response to transforming growth factor beta	IEP	Predict GO terms from Neighborhoods
BP	GO:0071560	cellular response to transforming growth factor beta stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071763	nuclear membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071774	response to fibroblast growth factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0071902	positive regulation of protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0071987	WD40-repeat domain binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0080154	regulation of fertilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0090311	regulation of protein deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0097011	cellular response to granulocyte macrophage colony-stimulating factor stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0097012	response to granulocyte macrophage colony-stimulating factor	IEP	Predict GO terms from Neighborhoods
MF	GO:0097602	cullin family protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0101025	nuclear membrane biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0101026	mitotic nuclear membrane biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0110044	regulation of cell cycle switching, mitotic to meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
MF	GO:0140313	molecular sequestering activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140610	RNA sequestering activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900151	regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEP	Predict GO terms from Neighborhoods
BP	GO:1900153	positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEP	Predict GO terms from Neighborhoods
BP	GO:1900193	regulation of oocyte maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900194	negative regulation of oocyte maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900195	positive regulation of oocyte maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901991	negative regulation of mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902100	negative regulation of metaphase/anaphase transition of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1902105	regulation of leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903429	regulation of cell maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903430	negative regulation of cell maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903431	positive regulation of cell maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903538	regulation of meiotic cell cycle process involved in oocyte maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904145	negative regulation of meiotic cell cycle process involved in oocyte maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904146	positive regulation of meiotic cell cycle process involved in oocyte maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905516	positive regulation of fertilization	IEP	Predict GO terms from Neighborhoods
MF	GO:1905762	CCR4-NOT complex binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1905819	negative regulation of chromosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905879	regulation of oogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:1990444	F-box domain binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000737	negative regulation of stem cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000816	negative regulation of mitotic sister chromatid separation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	11	75
IPR035979	RBD_domain_sf	103	193
IPR035979	RBD_domain_sf	6	97
IPR012921	SPOC_C	261	376

External Links

No external refs found!

SOLTUB.AGRIA.G00000021051

Expression Profile

Co-expression Networks

Functional Annotation