SOLTUB.AGRIA.G00000002342

Description : Dynein light chain 1, cytoplasmic

Gene families : OG_02_0005343 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000002342
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_126

Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	None	Extended
BP	GO:0000132	establishment of mitotic spindle orientation	IEA	AHRD
BP	GO:0000226	microtubule cytoskeleton organization	None	Extended
CC	GO:0000776	kinetochore	IEA	AHRD
BP	GO:0001505	regulation of neurotransmitter levels	None	Extended
BP	GO:0002791	regulation of peptide secretion	None	Extended
BP	GO:0002793	positive regulation of peptide secretion	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0004857	enzyme inhibitor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005643	nuclear pore	IEA	AHRD
CC	GO:0005737	cytoplasm	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
CC	GO:0005813	centrosome	IEA	AHRD
CC	GO:0005814	centriole	IEA	AHRD
CC	GO:0005815	microtubule organizing center	None	Extended
CC	GO:0005819	spindle	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005868	cytoplasmic dynein complex	IEA	AHRD
CC	GO:0005874	microtubule	IEA	AHRD
CC	GO:0005875	microtubule associated complex	None	Extended
CC	GO:0005886	plasma membrane	IEA	AHRD
CC	GO:0005929	cilium	None	Extended
CC	GO:0005930	axoneme	IEA	AHRD
BP	GO:0006810	transport	None	Extended
BP	GO:0006914	autophagy	IEA	AHRD
BP	GO:0006915	apoptotic process	IEA	AHRD
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0006997	nucleus organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007015	actin filament organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007018	microtubule-based movement	None	Extended
BP	GO:0007097	nuclear migration	None	Extended
BP	GO:0007276	gamete generation	None	Extended
BP	GO:0007281	germ cell development	None	Extended
BP	GO:0007290	spermatid nucleus elongation	IEA	AHRD
BP	GO:0007291	sperm individualization	IEA	AHRD
BP	GO:0007292	female gamete generation	None	Extended
BP	GO:0007349	cellularization	None	Extended
BP	GO:0007476	imaginal disc-derived wing morphogenesis	IEA	AHRD
MF	GO:0008022	protein C-terminus binding	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0008180	COP9 signalosome	IEA	AHRD
BP	GO:0008219	cell death	None	Extended
BP	GO:0008407	chaeta morphogenesis	IEA	AHRD
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009886	post-embryonic animal morphogenesis	None	Extended
BP	GO:0009887	animal organ morphogenesis	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010563	negative regulation of phosphorus metabolic process	None	Extended
BP	GO:0010623	programmed cell death involved in cell development	None	Extended
BP	GO:0010638	positive regulation of organelle organization	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010647	positive regulation of cell communication	None	Extended
BP	GO:0010720	positive regulation of cell development	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0010970	transport along microtubule	None	Extended
BP	GO:0012501	programmed cell death	None	Extended
CC	GO:0012506	vesicle membrane	None	Extended
BP	GO:0014041	regulation of neuron maturation	None	Extended
BP	GO:0014042	positive regulation of neuron maturation	None	Extended
CC	GO:0014069	postsynaptic density	IEA	AHRD
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0016459	myosin complex	None	Extended
CC	GO:0016461	unconventional myosin complex	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019899	enzyme binding	IEA	AHRD
MF	GO:0019904	protein domain specific binding	None	Extended
BP	GO:0019954	asexual reproduction	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023056	positive regulation of signaling	None	Extended
BP	GO:0030030	cell projection organization	None	Extended
BP	GO:0030031	cell projection assembly	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030235	nitric-oxide synthase regulator activity	IEA	AHRD
CC	GO:0030286	dynein complex	None	Extended
BP	GO:0030435	sporulation resulting in formation of a cellular spore	None	Extended
BP	GO:0030436	asexual sporulation	None	Extended
BP	GO:0030473	nuclear migration along microtubule	IEA	AHRD
CC	GO:0030659	cytoplasmic vesicle membrane	None	Extended
CC	GO:0030667	secretory granule membrane	None	Extended
BP	GO:0030705	cytoskeleton-dependent intracellular transport	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031344	regulation of cell projection organization	None	Extended
BP	GO:0031346	positive regulation of cell projection organization	None	Extended
CC	GO:0031475	myosin V complex	IEA	AHRD
BP	GO:0031503	protein-containing complex localization	None	Extended
CC	GO:0031514	motile cilium	IEA	AHRD
BP	GO:0032024	positive regulation of insulin secretion	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032838	plasma membrane bounded cell projection cytoplasm	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0034293	sexual sporulation	None	Extended
CC	GO:0034399	nuclear periphery	IEA	AHRD
BP	GO:0034453	microtubule anchoring	None	Extended
BP	GO:0034454	microtubule anchoring at centrosome	IEA	AHRD
BP	GO:0035071	salivary gland cell autophagic cell death	IEA	AHRD
BP	GO:0035107	appendage morphogenesis	None	Extended
BP	GO:0035114	imaginal disc-derived appendage morphogenesis	None	Extended
BP	GO:0035120	post-embryonic appendage morphogenesis	None	Extended
BP	GO:0035721	intraciliary retrograde transport	IEA	AHRD
BP	GO:0035774	positive regulation of insulin secretion involved in cellular response to glucose stimulus	IEA	AHRD
BP	GO:0040001	establishment of mitotic spindle localization	None	Extended
BP	GO:0042073	intraciliary transport	None	Extended
BP	GO:0042133	neurotransmitter metabolic process	IEA	AHRD
BP	GO:0042325	regulation of phosphorylation	None	Extended
BP	GO:0042326	negative regulation of phosphorylation	IEA	AHRD
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IEA	AHRD
CC	GO:0042995	cell projection	None	Extended
BP	GO:0043086	negative regulation of catalytic activity	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043934	sporulation	None	Extended
BP	GO:0043935	sexual sporulation resulting in formation of a cellular spore	IEA	AHRD
BP	GO:0044087	regulation of cellular component biogenesis	None	Extended
BP	GO:0044089	positive regulation of cellular component biogenesis	None	Extended
BP	GO:0044092	negative regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044458	motile cilium assembly	IEA	AHRD
BP	GO:0044782	cilium organization	None	Extended
MF	GO:0044877	protein-containing complex binding	IEA	AHRD
BP	GO:0045019	negative regulation of nitric oxide biosynthetic process	IEA	AHRD
CC	GO:0045202	synapse	None	Extended
BP	GO:0045428	regulation of nitric oxide biosynthetic process	None	Extended
MF	GO:0045505	dynein intermediate chain binding	IEA	AHRD
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045597	positive regulation of cell differentiation	None	Extended
BP	GO:0045664	regulation of neuron differentiation	None	Extended
BP	GO:0045724	positive regulation of cilium assembly	None	Extended
BP	GO:0045936	negative regulation of phosphate metabolic process	None	Extended
BP	GO:0046883	regulation of hormone secretion	None	Extended
BP	GO:0046887	positive regulation of hormone secretion	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048102	autophagic cell death	None	Extended
BP	GO:0048315	conidium formation	IEA	AHRD
BP	GO:0048468	cell development	None	Extended
BP	GO:0048477	oogenesis	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0050708	regulation of protein secretion	None	Extended
BP	GO:0050714	positive regulation of protein secretion	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050796	regulation of insulin secretion	None	Extended
BP	GO:0051017	actin filament bundle assembly	IEA	AHRD
BP	GO:0051028	mRNA transport	IEA	AHRD
BP	GO:0051046	regulation of secretion	None	Extended
BP	GO:0051047	positive regulation of secretion	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051050	positive regulation of transport	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051222	positive regulation of protein transport	None	Extended
BP	GO:0051223	regulation of protein transport	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051293	establishment of spindle localization	None	Extended
BP	GO:0051294	establishment of spindle orientation	None	Extended
BP	GO:0051301	cell division	IEA	AHRD
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051647	nucleus localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051653	spindle localization	None	Extended
BP	GO:0051656	establishment of organelle localization	None	Extended
MF	GO:0051959	dynein light intermediate chain binding	IEA	AHRD
BP	GO:0060271	cilium assembly	None	Extended
BP	GO:0060284	regulation of cell development	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0060491	regulation of cell projection assembly	None	Extended
BP	GO:0061178	regulation of insulin secretion involved in cellular response to glucose stimulus	None	Extended
BP	GO:0061572	actin filament bundle organization	None	Extended
BP	GO:0061919	process utilizing autophagic mechanism	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0070201	regulation of establishment of protein localization	None	Extended
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072384	organelle transport along microtubule	None	Extended
BP	GO:0072393	microtubule anchoring at microtubule organizing center	None	Extended
CC	GO:0072686	mitotic spindle	IEA	AHRD
BP	GO:0080164	regulation of nitric oxide metabolic process	None	Extended
BP	GO:0090087	regulation of peptide transport	None	Extended
BP	GO:0090276	regulation of peptide hormone secretion	None	Extended
BP	GO:0090277	positive regulation of peptide hormone secretion	None	Extended
MF	GO:0097110	scaffold protein binding	IEA	AHRD
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0097542	ciliary tip	IEA	AHRD
MF	GO:0097718	disordered domain specific binding	IEA	AHRD
CC	GO:0097730	non-motile cilium	None	Extended
CC	GO:0097731	9+0 non-motile cilium	IEA	AHRD
CC	GO:0098588	bounding membrane of organelle	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0098978	glutamatergic synapse	IEA	AHRD
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0099081	supramolecular polymer	None	Extended
BP	GO:0099111	microtubule-based transport	None	Extended
CC	GO:0099512	supramolecular fiber	None	Extended
CC	GO:0099513	polymeric cytoskeletal fiber	None	Extended
CC	GO:0099568	cytoplasmic region	None	Extended
CC	GO:0099572	postsynaptic specialization	None	Extended
CC	GO:0101003	ficolin-1-rich granule membrane	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
BP	GO:0120031	plasma membrane bounded cell projection assembly	None	Extended
BP	GO:0120032	regulation of plasma membrane bounded cell projection assembly	None	Extended
BP	GO:0120034	positive regulation of plasma membrane bounded cell projection assembly	None	Extended
BP	GO:0120035	regulation of plasma membrane bounded cell projection organization	None	Extended
BP	GO:0120036	plasma membrane bounded cell projection organization	None	Extended
CC	GO:0120111	neuron projection cytoplasm	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1902017	regulation of cilium assembly	None	Extended
BP	GO:1902115	regulation of organelle assembly	None	Extended
BP	GO:1902117	positive regulation of organelle assembly	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902850	microtubule cytoskeleton organization involved in mitosis	None	Extended
BP	GO:1902855	regulation of non-motile cilium assembly	None	Extended
BP	GO:1902857	positive regulation of non-motile cilium assembly	IEA	AHRD
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1903047	mitotic cell cycle process	None	Extended
BP	GO:1903429	regulation of cell maturation	None	Extended
BP	GO:1903431	positive regulation of cell maturation	None	Extended
BP	GO:1903530	regulation of secretion by cell	None	Extended
BP	GO:1903532	positive regulation of secretion by cell	None	Extended
BP	GO:1903829	positive regulation of protein localization	None	Extended
CC	GO:1904115	axon cytoplasm	IEA	AHRD
BP	GO:1904406	negative regulation of nitric oxide metabolic process	None	Extended
BP	GO:1904799	regulation of neuron remodeling	None	Extended
BP	GO:1904801	positive regulation of neuron remodeling	IEA	AHRD
BP	GO:1904951	positive regulation of establishment of protein localization	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000245	spliceosomal complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predict GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005682	U5 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005684	U2-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005811	lipid droplet	IEP	Predict GO terms from Neighborhoods
BP	GO:0006513	protein monoubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010620	negative regulation of transcription by transcription factor catabolism	IEP	Predict GO terms from Neighborhoods
BP	GO:0030433	ubiquitin-dependent ERAD pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0032387	negative regulation of intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0033157	regulation of intracellular protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035456	response to interferon-beta	IEP	Predict GO terms from Neighborhoods
BP	GO:0035458	cellular response to interferon-beta	IEP	Predict GO terms from Neighborhoods
BP	GO:0036369	transcription factor catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0036503	ERAD pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0043065	positive regulation of apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043523	regulation of neuron apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043525	positive regulation of neuron apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043949	regulation of cAMP-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0043951	negative regulation of cAMP-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0045292	mRNA cis splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0051224	negative regulation of protein transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0061631	ubiquitin conjugating enzyme activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0061650	ubiquitin-like protein conjugating enzyme activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070534	protein K63-linked ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0070861	regulation of protein exit from endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0070862	negative regulation of protein exit from endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0070936	protein K48-linked ubiquitination	IEP	Predict GO terms from Neighborhoods
CC	GO:0071005	U2-type precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071011	precatalytic spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0090083	regulation of inclusion body assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0090261	positive regulation of inclusion body assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0090317	negative regulation of intracellular protein transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1901214	regulation of neuron death	IEP	Predict GO terms from Neighborhoods
BP	GO:1901216	positive regulation of neuron death	IEP	Predict GO terms from Neighborhoods
BP	GO:1903828	negative regulation of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1904152	regulation of retrograde protein transport, ER to cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:1904153	negative regulation of retrograde protein transport, ER to cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:1904950	negative regulation of establishment of protein localization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001372	Dynein_light_chain_typ-1/2	35	118
IPR037177	DLC_sf	34	119

External Links

No external refs found!

SOLTUB.AGRIA.G00000002342

Expression Profile

Co-expression Networks

Functional Annotation