SOLTUB.AGRIA.G00000023041


Description : Polynucleotidyl transferase, ribonuclease H-like superfamily protein


Gene families : OG_02_0001873 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000023041
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_62


Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEA AHRD
CC GO:0000932 P-body IEA AHRD
BP GO:0002213 defense response to insect IEA AHRD
MF GO:0003682 chromatin binding IEA AHRD
MF GO:0003714 transcription corepressor activity IEA AHRD
MF GO:0003723 RNA binding IEA AHRD
MF GO:0004535 poly(A)-specific ribonuclease activity IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0008284 positive regulation of cell population proliferation IEA AHRD
BP GO:0008285 negative regulation of cell population proliferation IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
BP GO:0009611 response to wounding IEA AHRD
CC GO:0016607 nuclear speck IEA AHRD
CC GO:0030015 CCR4-NOT core complex IEA AHRD
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEA AHRD
BP GO:0033962 P-body assembly IEA AHRD
BP GO:0035195 miRNA-mediated gene silencing IEA AHRD
BP GO:0042509 regulation of tyrosine phosphorylation of STAT protein IEA AHRD
BP GO:0042742 defense response to bacterium IEA AHRD
CC GO:0043186 P granule IEA AHRD
BP GO:0043928 exonucleolytic catabolism of deadenylated mRNA IEA AHRD
BP GO:0045070 positive regulation of viral genome replication IEA AHRD
BP GO:0045892 negative regulation of DNA-templated transcription IEA AHRD
CC GO:0046658 anchored component of plasma membrane IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
BP GO:0048477 oogenesis IEA AHRD
BP GO:0051607 defense response to virus IEA AHRD
BP GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA AHRD
BP GO:0060339 negative regulation of type I interferon-mediated signaling pathway IEA AHRD
BP GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA AHRD
MF GO:0140297 DNA-binding transcription factor binding IEA AHRD
BP GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000082 G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0000117 regulation of transcription involved in G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0000281 mitotic cytokinesis IEP Predict GO terms from Neighborhoods
CC GO:0000791 euchromatin IEP Predict GO terms from Neighborhoods
CC GO:0000813 ESCRT I complex IEP Predict GO terms from Neighborhoods
MF GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific IEP Predict GO terms from Neighborhoods
BP GO:0002696 positive regulation of leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0002699 positive regulation of immune effector process IEP Predict GO terms from Neighborhoods
MF GO:0004664 prephenate dehydratase activity IEP Predict GO terms from Neighborhoods
CC GO:0005700 polytene chromosome IEP Predict GO terms from Neighborhoods
BP GO:0006277 DNA amplification IEP Predict GO terms from Neighborhoods
BP GO:0006558 L-phenylalanine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006570 tyrosine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006571 tyrosine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0007099 centriole replication IEP Predict GO terms from Neighborhoods
BP GO:0007127 meiosis I IEP Predict GO terms from Neighborhoods
BP GO:0007140 male meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0007141 male meiosis I IEP Predict GO terms from Neighborhoods
BP GO:0007307 eggshell chorion gene amplification IEP Predict GO terms from Neighborhoods
BP GO:0007605 sensory perception of sound IEP Predict GO terms from Neighborhoods
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predict GO terms from Neighborhoods
BP GO:0009642 response to light intensity IEP Predict GO terms from Neighborhoods
BP GO:0009886 post-embryonic animal morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009913 epidermal cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010045 response to nickel cation IEP Predict GO terms from Neighborhoods
BP GO:0010117 photoprotection IEP Predict GO terms from Neighborhoods
BP GO:0010200 response to chitin IEP Predict GO terms from Neighborhoods
BP GO:0010243 response to organonitrogen compound IEP Predict GO terms from Neighborhoods
BP GO:0010244 response to low fluence blue light stimulus by blue low-fluence system IEP Predict GO terms from Neighborhoods
BP GO:0010528 regulation of transposition IEP Predict GO terms from Neighborhoods
BP GO:0010529 negative regulation of transposition IEP Predict GO terms from Neighborhoods
BP GO:0010929 positive regulation of auxin mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010942 positive regulation of cell death IEP Predict GO terms from Neighborhoods
BP GO:0010971 positive regulation of G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Predict GO terms from Neighborhoods
CC GO:0016363 nuclear matrix IEP Predict GO terms from Neighborhoods
BP GO:0017145 stem cell division IEP Predict GO terms from Neighborhoods
BP GO:0022407 regulation of cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0022409 positive regulation of cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0030098 lymphocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030183 B cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030261 chromosome condensation IEP Predict GO terms from Neighborhoods
BP GO:0031023 microtubule organizing center organization IEP Predict GO terms from Neighborhoods
CC GO:0031523 Myb complex IEP Predict GO terms from Neighborhoods
CC GO:0032420 stereocilium IEP Predict GO terms from Neighborhoods
BP GO:0034587 piRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035264 multicellular organism growth IEP Predict GO terms from Neighborhoods
BP GO:0035315 hair cell differentiation IEP Predict GO terms from Neighborhoods
CC GO:0036452 ESCRT complex IEP Predict GO terms from Neighborhoods
BP GO:0042113 B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0042490 mechanoreceptor differentiation IEP Predict GO terms from Neighborhoods
BP GO:0042491 inner ear auditory receptor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0043370 regulation of CD4-positive, alpha-beta T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0043372 positive regulation of CD4-positive, alpha-beta T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0044843 cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
BP GO:0045580 regulation of T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045582 positive regulation of T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045619 regulation of lymphocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045621 positive regulation of lymphocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045622 regulation of T-helper cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045624 positive regulation of T-helper cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045785 positive regulation of cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0045792 negative regulation of cell size IEP Predict GO terms from Neighborhoods
BP GO:0046634 regulation of alpha-beta T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0046635 positive regulation of alpha-beta T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0046637 regulation of alpha-beta T cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0046638 positive regulation of alpha-beta T cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:0047769 arogenate dehydratase activity IEP Predict GO terms from Neighborhoods
BP GO:0048536 spleen development IEP Predict GO terms from Neighborhoods
BP GO:0048538 thymus development IEP Predict GO terms from Neighborhoods
BP GO:0048563 post-embryonic animal organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048565 digestive tract development IEP Predict GO terms from Neighborhoods
BP GO:0048566 embryonic digestive tract development IEP Predict GO terms from Neighborhoods
BP GO:0048568 embryonic organ development IEP Predict GO terms from Neighborhoods
BP GO:0048666 neuron development IEP Predict GO terms from Neighborhoods
BP GO:0048872 homeostasis of number of cells IEP Predict GO terms from Neighborhoods
BP GO:0050863 regulation of T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050867 positive regulation of cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050870 positive regulation of T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050954 sensory perception of mechanical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0051249 regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051251 positive regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051301 cell division IEP Predict GO terms from Neighborhoods
BP GO:0051569 regulation of histone H3-K4 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051570 regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051571 positive regulation of histone H3-K4 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
CC GO:0060091 kinocilium IEP Predict GO terms from Neighborhoods
BP GO:0060113 inner ear receptor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0060118 vestibular receptor cell development IEP Predict GO terms from Neighborhoods
BP GO:0060119 inner ear receptor cell development IEP Predict GO terms from Neighborhoods
BP GO:0060122 inner ear receptor cell stereocilium organization IEP Predict GO terms from Neighborhoods
BP GO:0061982 meiosis I cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0070741 response to interleukin-6 IEP Predict GO terms from Neighborhoods
BP GO:0071289 cellular response to nickel ion IEP Predict GO terms from Neighborhoods
BP GO:0071354 cellular response to interleukin-6 IEP Predict GO terms from Neighborhoods
MF GO:0071987 WD40-repeat domain binding IEP Predict GO terms from Neighborhoods
BP GO:0080167 response to karrikin IEP Predict GO terms from Neighborhoods
BP GO:0090282 positive regulation of transcription involved in G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
CC GO:0097730 non-motile cilium IEP Predict GO terms from Neighborhoods
CC GO:0097732 9+2 non-motile cilium IEP Predict GO terms from Neighborhoods
BP GO:0098534 centriole assembly IEP Predict GO terms from Neighborhoods
CC GO:0098858 actin-based cell projection IEP Predict GO terms from Neighborhoods
BP GO:1901216 positive regulation of neuron death IEP Predict GO terms from Neighborhoods
BP GO:1901347 negative regulation of secondary cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:1901348 positive regulation of secondary cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:1901532 regulation of hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1901533 negative regulation of hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1901698 response to nitrogen compound IEP Predict GO terms from Neighborhoods
BP GO:1902105 regulation of leukocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902107 positive regulation of leukocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902751 positive regulation of cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
BP GO:1903037 regulation of leukocyte cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:1903039 positive regulation of leukocyte cell-cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:1903131 mononuclear cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1903339 negative regulation of cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:1903340 positive regulation of cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:1903708 positive regulation of hemopoiesis IEP Predict GO terms from Neighborhoods
BP GO:1990511 piRNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1990823 response to leukemia inhibitory factor IEP Predict GO terms from Neighborhoods
BP GO:1990830 cellular response to leukemia inhibitory factor IEP Predict GO terms from Neighborhoods
BP GO:2000514 regulation of CD4-positive, alpha-beta T cell activation IEP Predict GO terms from Neighborhoods
BP GO:2000516 positive regulation of CD4-positive, alpha-beta T cell activation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 251 375
IPR004864 LEA_2 74 177
IPR012337 RNaseH-like_sf 248 507
No external refs found!