SOLTUB.AGRIA.G00000024780

Description : WD repeat-containing protein 61

Gene families : OG_02_0009801 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000024780
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_126

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
BP	GO:0002682	regulation of immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005929	cilium	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	None	Extended
BP	GO:0006368	transcription elongation by RNA polymerase II promoter	IEA	AHRD
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
CC	GO:0008023	transcription elongation factor complex	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009909	regulation of flower development	None	Extended
BP	GO:0009910	negative regulation of flower development	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016301	kinase activity	IEA	AHRD
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
CC	GO:0016593	Cdc73/Paf1 complex	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018023	peptidyl-lysine trimethylation	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031058	positive regulation of histone modification	None	Extended
BP	GO:0031060	regulation of histone methylation	None	Extended
BP	GO:0031062	positive regulation of histone methylation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
CC	GO:0042995	cell projection	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045596	negative regulation of cell differentiation	None	Extended
BP	GO:0045637	regulation of myeloid cell differentiation	None	Extended
BP	GO:0045638	negative regulation of myeloid cell differentiation	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051568	histone H3-K4 methylation	None	Extended
BP	GO:0051569	regulation of histone H3-K4 methylation	None	Extended
BP	GO:0051571	positive regulation of histone H3-K4 methylation	IEA	AHRD
CC	GO:0055087	Ski complex	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEA	AHRD
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080182	histone H3-K4 trimethylation	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0099111	microtubule-based transport	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1903706	regulation of hemopoiesis	None	Extended
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000242	negative regulation of reproductive process	None	Extended
BP	GO:2001160	regulation of histone H3-K79 methylation	None	Extended
BP	GO:2001162	positive regulation of histone H3-K79 methylation	IEA	AHRD

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000118	histone deacetylase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000220	vacuolar proton-transporting V-type ATPase, V0 domain	IEP	Predict GO terms from Neighborhoods
BP	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0002064	epithelial cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002066	columnar/cuboidal epithelial cell development	IEP	Predict GO terms from Neighborhoods
MF	GO:0003714	transcription corepressor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004470	malic enzyme activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005742	mitochondrial outer membrane translocase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005765	lysosomal membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005774	vacuolar membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005801	cis-Golgi network	IEP	Predict GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006099	tricarboxylic acid cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0006107	oxaloacetate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006108	malate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006734	NADH metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006839	mitochondrial transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006885	regulation of pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0007035	vacuolar acidification	IEP	Predict GO terms from Neighborhoods
MF	GO:0008553	P-type proton-exporting transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008643	carbohydrate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010043	response to zinc ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010506	regulation of autophagy	IEP	Predict GO terms from Neighborhoods
MF	GO:0015662	P-type ion transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015774	polysaccharide transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0016021	integral component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016241	regulation of macroautophagy	IEP	Predict GO terms from Neighborhoods
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0016471	vacuolar proton-transporting V-type ATPase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016615	malate dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019674	NAD metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019829	ATPase-coupled cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030004	cellular monovalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0030060	L-malate dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030134	COPII-coated ER to Golgi transport vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030135	coated vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0030243	cellulose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030244	cellulose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030641	regulation of cellular pH	IEP	Predict GO terms from Neighborhoods
CC	GO:0030666	endocytic vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030670	phagocytic vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031224	intrinsic component of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031985	Golgi cisterna	IEP	Predict GO terms from Neighborhoods
CC	GO:0032588	trans-Golgi network membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0033119	negative regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
CC	GO:0033176	proton-transporting V-type ATPase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Predict GO terms from Neighborhoods
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	Predict GO terms from Neighborhoods
BP	GO:0034406	cell wall beta-glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034410	cell wall beta-glucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0035145	exon-exon junction complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043065	positive regulation of apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043484	regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predict GO terms from Neighborhoods
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Predict GO terms from Neighborhoods
BP	GO:0045489	pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	Predict GO terms from Neighborhoods
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048025	negative regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048766	root hair initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050684	regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0050686	negative regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0051287	NAD binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051452	intracellular pH reduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0051453	regulation of intracellular pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0052324	plant-type cell wall cellulose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0060576	intestinal epithelial cell development	IEP	Predict GO terms from Neighborhoods
CC	GO:0061574	ASAP complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0070585	protein localization to mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071806	protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Predict GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098799	outer mitochondrial membrane protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098852	lytic vacuole membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0140358	P-type transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902600	proton transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903312	negative regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR024977	Apc4_WD40_dom	136	197
IPR036322	WD40_repeat_dom_sf	9	322
IPR001680	WD40_repeat	94	131
IPR001680	WD40_repeat	237	273
IPR001680	WD40_repeat	51	87
IPR001680	WD40_repeat	280	320

External Links

No external refs found!

SOLTUB.AGRIA.G00000024780

Expression Profile

Co-expression Networks

Functional Annotation