SOLTUB.AGRIA.G00000026708


Description : Growth-regulating factor 4


Gene families : OG_02_0004821 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000026708
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_200


Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEA AHRD
MF GO:0005515 protein binding IEA AHRD
MF GO:0005524 ATP binding IEA AHRD
CC GO:0005634 nucleus IEA AHRD
BP GO:0008285 negative regulation of cell population proliferation IEA AHRD
BP GO:0009409 response to cold IEA AHRD
BP GO:0009624 response to nematode IEA AHRD
BP GO:0009739 response to gibberellin IEA AHRD
BP GO:0019760 glucosinolate metabolic process IEA AHRD
BP GO:0030912 response to deep water IEA AHRD
BP GO:0045893 positive regulation of DNA-templated transcription IEA AHRD
BP GO:0048316 seed development IEA AHRD
BP GO:0048364 root development IEA AHRD
BP GO:0048366 leaf development IEA AHRD
BP GO:0061062 regulation of nematode larval development IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Predict GO terms from Neighborhoods
BP GO:0001173 DNA-templated transcriptional start site selection IEP Predict GO terms from Neighborhoods
BP GO:0002084 protein depalmitoylation IEP Predict GO terms from Neighborhoods
BP GO:0002244 hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:0003682 chromatin binding IEP Predict GO terms from Neighborhoods
CC GO:0005677 chromatin silencing complex IEP Predict GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005731 nucleolus organizer region IEP Predict GO terms from Neighborhoods
BP GO:0006277 DNA amplification IEP Predict GO terms from Neighborhoods
BP GO:0006335 DNA replication-dependent chromatin assembly IEP Predict GO terms from Neighborhoods
BP GO:0006349 regulation of gene expression by genomic imprinting IEP Predict GO terms from Neighborhoods
BP GO:0006401 RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006402 mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007143 female meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0007307 eggshell chorion gene amplification IEP Predict GO terms from Neighborhoods
BP GO:0007379 segment specification IEP Predict GO terms from Neighborhoods
BP GO:0007389 pattern specification process IEP Predict GO terms from Neighborhoods
BP GO:0008306 associative learning IEP Predict GO terms from Neighborhoods
MF GO:0008474 palmitoyl-(protein) hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0009511 plasmodesmatal endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0009616 RNAi-mediated antiviral immune response IEP Predict GO terms from Neighborhoods
BP GO:0009639 response to red or far red light IEP Predict GO terms from Neighborhoods
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth IEP Predict GO terms from Neighborhoods
BP GO:0009836 fruit ripening, climacteric IEP Predict GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009900 dehiscence IEP Predict GO terms from Neighborhoods
BP GO:0009909 regulation of flower development IEP Predict GO terms from Neighborhoods
BP GO:0009911 positive regulation of flower development IEP Predict GO terms from Neighborhoods
BP GO:0009955 adaxial/abaxial pattern specification IEP Predict GO terms from Neighborhoods
BP GO:0010026 trichome differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010072 primary shoot apical meristem specification IEP Predict GO terms from Neighborhoods
BP GO:0010114 response to red light IEP Predict GO terms from Neighborhoods
BP GO:0010218 response to far red light IEP Predict GO terms from Neighborhoods
BP GO:0010271 regulation of chlorophyll catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010501 RNA secondary structure unwinding IEP Predict GO terms from Neighborhoods
BP GO:0010586 miRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010770 positive regulation of cell morphogenesis involved in differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010807 regulation of synaptic vesicle priming IEP Predict GO terms from Neighborhoods
BP GO:0010930 negative regulation of auxin mediated signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0016442 RISC complex IEP Predict GO terms from Neighborhoods
CC GO:0016514 SWI/SNF complex IEP Predict GO terms from Neighborhoods
CC GO:0016581 NuRD complex IEP Predict GO terms from Neighborhoods
BP GO:0016584 obsolete nucleosome positioning IEP Predict GO terms from Neighborhoods
CC GO:0016589 NURF complex IEP Predict GO terms from Neighborhoods
BP GO:0017156 calcium-ion regulated exocytosis IEP Predict GO terms from Neighborhoods
MF GO:0019905 syntaxin binding IEP Predict GO terms from Neighborhoods
BP GO:0019953 sexual reproduction IEP Predict GO terms from Neighborhoods
MF GO:0030374 nuclear receptor coactivator activity IEP Predict GO terms from Neighborhoods
CC GO:0030874 nucleolar chromatin IEP Predict GO terms from Neighborhoods
CC GO:0031010 ISWI-type complex IEP Predict GO terms from Neighborhoods
BP GO:0031056 regulation of histone modification IEP Predict GO terms from Neighborhoods
BP GO:0031057 negative regulation of histone modification IEP Predict GO terms from Neighborhoods
BP GO:0031058 positive regulation of histone modification IEP Predict GO terms from Neighborhoods
BP GO:0031060 regulation of histone methylation IEP Predict GO terms from Neighborhoods
BP GO:0031062 positive regulation of histone methylation IEP Predict GO terms from Neighborhoods
BP GO:0031101 fin regeneration IEP Predict GO terms from Neighborhoods
BP GO:0031137 regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0031138 negative regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
CC GO:0031302 intrinsic component of endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0031332 RNAi effector complex IEP Predict GO terms from Neighborhoods
BP GO:0031344 regulation of cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0031401 positive regulation of protein modification process IEP Predict GO terms from Neighborhoods
BP GO:0031440 regulation of mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031445 regulation of heterochromatin formation IEP Predict GO terms from Neighborhoods
MF GO:0031490 chromatin DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0031491 nucleosome binding IEP Predict GO terms from Neighborhoods
MF GO:0031492 nucleosomal DNA binding IEP Predict GO terms from Neighborhoods
CC GO:0031519 PcG protein complex IEP Predict GO terms from Neighborhoods
CC GO:0031523 Myb complex IEP Predict GO terms from Neighborhoods
BP GO:0031936 obsolete negative regulation of chromatin silencing IEP Predict GO terms from Neighborhoods
BP GO:0031937 obsolete positive regulation of chromatin silencing IEP Predict GO terms from Neighborhoods
BP GO:0033169 histone H3-K9 demethylation IEP Predict GO terms from Neighborhoods
CC GO:0033186 CAF-1 complex IEP Predict GO terms from Neighborhoods
CC GO:0033620 Mei2 nuclear dot complex IEP Predict GO terms from Neighborhoods
CC GO:0034064 Tor2-Mei2-Ste11 complex IEP Predict GO terms from Neighborhoods
BP GO:0035019 somatic stem cell population maintenance IEP Predict GO terms from Neighborhoods
BP GO:0035065 regulation of histone acetylation IEP Predict GO terms from Neighborhoods
BP GO:0035067 negative regulation of histone acetylation IEP Predict GO terms from Neighborhoods
CC GO:0035098 ESC/E(Z) complex IEP Predict GO terms from Neighborhoods
MF GO:0035197 siRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0035198 miRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0042157 lipoprotein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042159 lipoprotein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042246 tissue regeneration IEP Predict GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Predict GO terms from Neighborhoods
BP GO:0042595 behavioral response to starvation IEP Predict GO terms from Neighborhoods
BP GO:0042766 obsolete nucleosome mobilization IEP Predict GO terms from Neighborhoods
MF GO:0042803 protein homodimerization activity IEP Predict GO terms from Neighborhoods
BP GO:0043268 positive regulation of potassium ion transport IEP Predict GO terms from Neighborhoods
CC GO:0043679 axon terminus IEP Predict GO terms from Neighborhoods
BP GO:0044030 regulation of DNA methylation IEP Predict GO terms from Neighborhoods
CC GO:0044306 neuron projection terminus IEP Predict GO terms from Neighborhoods
BP GO:0045787 positive regulation of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0045836 positive regulation of meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0046689 response to mercury ion IEP Predict GO terms from Neighborhoods
BP GO:0046928 regulation of neurotransmitter secretion IEP Predict GO terms from Neighborhoods
BP GO:0048578 positive regulation of long-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048582 positive regulation of post-embryonic development IEP Predict GO terms from Neighborhoods
CC GO:0048786 presynaptic active zone IEP Predict GO terms from Neighborhoods
BP GO:0048814 regulation of dendrite morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048831 regulation of shoot system development IEP Predict GO terms from Neighborhoods
BP GO:0050775 positive regulation of dendrite morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050806 positive regulation of synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0051094 positive regulation of developmental process IEP Predict GO terms from Neighborhoods
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051240 positive regulation of multicellular organismal process IEP Predict GO terms from Neighborhoods
BP GO:0051247 positive regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051570 regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051588 regulation of neurotransmitter transport IEP Predict GO terms from Neighborhoods
BP GO:0051607 defense response to virus IEP Predict GO terms from Neighborhoods
BP GO:0051665 membrane raft localization IEP Predict GO terms from Neighborhoods
MF GO:0051749 indole acetic acid carboxyl methyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0055038 recycling endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0060076 excitatory synapse IEP Predict GO terms from Neighborhoods
BP GO:0061085 regulation of histone H3-K27 methylation IEP Predict GO terms from Neighborhoods
BP GO:0061087 positive regulation of histone H3-K27 methylation IEP Predict GO terms from Neighborhoods
BP GO:0061866 obsolete negative regulation of histone H3-S10 phosphorylation IEP Predict GO terms from Neighborhoods
CC GO:0070578 RISC-loading complex IEP Predict GO terms from Neighborhoods
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predict GO terms from Neighborhoods
CC GO:0070822 Sin3-type complex IEP Predict GO terms from Neighborhoods
BP GO:0070829 obsolete heterochromatin maintenance IEP Predict GO terms from Neighborhoods
CC GO:0071565 nBAF complex IEP Predict GO terms from Neighborhoods
CC GO:0071683 sensory dendrite IEP Predict GO terms from Neighborhoods
BP GO:0080167 response to karrikin IEP Predict GO terms from Neighborhoods
BP GO:0090068 positive regulation of cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0090398 cellular senescence IEP Predict GO terms from Neighborhoods
BP GO:0090400 stress-induced premature senescence IEP Predict GO terms from Neighborhoods
BP GO:0090436 leaf pavement cell development IEP Predict GO terms from Neighborhoods
CC GO:0090545 CHD-type complex IEP Predict GO terms from Neighborhoods
BP GO:0090709 regulation of timing of plant organ formation IEP Predict GO terms from Neighborhoods
MF GO:0098599 palmitoyl hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0098734 macromolecule depalmitoylation IEP Predict GO terms from Neighborhoods
CC GO:0098936 intrinsic component of postsynaptic membrane IEP Predict GO terms from Neighborhoods
CC GO:0098948 intrinsic component of postsynaptic specialization membrane IEP Predict GO terms from Neighborhoods
CC GO:0098949 intrinsic component of postsynaptic endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0098951 intrinsic component of postsynaptic recycling endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0099011 neuronal dense core vesicle exocytosis IEP Predict GO terms from Neighborhoods
CC GO:0099025 anchored component of postsynaptic membrane IEP Predict GO terms from Neighborhoods
CC GO:0099030 anchored component of postsynaptic specialization membrane IEP Predict GO terms from Neighborhoods
CC GO:0099031 anchored component of postsynaptic density membrane IEP Predict GO terms from Neighborhoods
CC GO:0099033 anchored component of postsynaptic recycling endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0099034 anchored component of postsynaptic endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0099144 anchored component of synaptic membrane IEP Predict GO terms from Neighborhoods
CC GO:0099146 intrinsic component of postsynaptic density membrane IEP Predict GO terms from Neighborhoods
BP GO:0099175 regulation of postsynapse organization IEP Predict GO terms from Neighborhoods
CC GO:0099240 intrinsic component of synaptic membrane IEP Predict GO terms from Neighborhoods
MF GO:0103007 indole-3-acetate carboxyl methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0110046 signal transduction involved in cell cycle switching, mitotic to meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0120035 regulation of plasma membrane bounded cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0120261 regulation of heterochromatin organization IEP Predict GO terms from Neighborhoods
MF GO:0140110 transcription regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0140311 protein sequestering activity IEP Predict GO terms from Neighborhoods
MF GO:0140313 molecular sequestering activity IEP Predict GO terms from Neighborhoods
BP GO:0140538 negative regulation of conjugation with zygote IEP Predict GO terms from Neighborhoods
BP GO:0140546 defense response to symbiont IEP Predict GO terms from Neighborhoods
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:1900363 regulation of mRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:1901222 regulation of NIK/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:1901224 positive regulation of NIK/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:1901381 positive regulation of potassium ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1901403 positive regulation of tetrapyrrole metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901404 regulation of tetrapyrrole catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901406 positive regulation of tetrapyrrole catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901983 regulation of protein acetylation IEP Predict GO terms from Neighborhoods
BP GO:1901984 negative regulation of protein acetylation IEP Predict GO terms from Neighborhoods
BP GO:1901993 regulation of meiotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901995 positive regulation of meiotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902102 regulation of metaphase/anaphase transition of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902104 positive regulation of metaphase/anaphase transition of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:1902182 shoot apical meristem development IEP Predict GO terms from Neighborhoods
BP GO:1902183 regulation of shoot apical meristem development IEP Predict GO terms from Neighborhoods
BP GO:1902473 regulation of protein localization to synapse IEP Predict GO terms from Neighborhoods
CC GO:1902555 endoribonuclease complex IEP Predict GO terms from Neighborhoods
BP GO:1902816 regulation of protein localization to microtubule IEP Predict GO terms from Neighborhoods
BP GO:1902817 negative regulation of protein localization to microtubule IEP Predict GO terms from Neighborhoods
BP GO:1902950 regulation of dendritic spine maintenance IEP Predict GO terms from Neighborhoods
BP GO:1903286 regulation of potassium ion import IEP Predict GO terms from Neighborhoods
BP GO:1903288 positive regulation of potassium ion import across plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:1903341 regulation of meiotic DNA double-strand break formation IEP Predict GO terms from Neighborhoods
BP GO:1903343 positive regulation of meiotic DNA double-strand break formation IEP Predict GO terms from Neighborhoods
BP GO:1903648 positive regulation of chlorophyll catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1904248 regulation of age-related resistance IEP Predict GO terms from Neighborhoods
BP GO:1904250 positive regulation of age-related resistance IEP Predict GO terms from Neighborhoods
CC GO:1904949 ATPase complex IEP Predict GO terms from Neighborhoods
BP GO:1905132 regulation of meiotic chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905134 positive regulation of meiotic chromosome separation IEP Predict GO terms from Neighborhoods
BP GO:1905189 regulation of metaphase/anaphase transition of meiosis II IEP Predict GO terms from Neighborhoods
BP GO:1905191 positive regulation of metaphase/anaphase transition of meiosis II IEP Predict GO terms from Neighborhoods
CC GO:1905348 endonuclease complex IEP Predict GO terms from Neighborhoods
BP GO:1905666 regulation of protein localization to endosome IEP Predict GO terms from Neighborhoods
BP GO:1905668 positive regulation of protein localization to endosome IEP Predict GO terms from Neighborhoods
BP GO:1990504 dense core granule exocytosis IEP Predict GO terms from Neighborhoods
BP GO:2000014 regulation of endosperm development IEP Predict GO terms from Neighborhoods
BP GO:2000028 regulation of photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:2000241 regulation of reproductive process IEP Predict GO terms from Neighborhoods
BP GO:2000243 positive regulation of reproductive process IEP Predict GO terms from Neighborhoods
BP GO:2000615 regulation of histone H3-K9 acetylation IEP Predict GO terms from Neighborhoods
BP GO:2000616 negative regulation of histone H3-K9 acetylation IEP Predict GO terms from Neighborhoods
BP GO:2000653 regulation of genetic imprinting IEP Predict GO terms from Neighborhoods
BP GO:2000756 regulation of peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
BP GO:2000757 negative regulation of peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR014977 WRC_dom 93 135
IPR014978 Gln-Leu-Gln_QLQ 31 65
No external refs found!