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  5. SOLTUB.AGRIA.G00000033055

SOLTUB.AGRIA.G00000033055


Description : Pentatricopeptide repeat-containing protein


Gene families : OG_02_0016698 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033055
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_65


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
BP GO:0006396 RNA processing IEA AHRD
CC GO:0016020 membrane IEA AHRD
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Type GO Term Name Evidence Source
CC GO:0000314 organellar small ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0000373 Group II intron splicing IEP Predict GO terms from Neighborhoods
MF GO:0001671 ATPase activator activity IEP Predict GO terms from Neighborhoods
CC GO:0001772 immunological synapse IEP Predict GO terms from Neighborhoods
BP GO:0001775 cell activation IEP Predict GO terms from Neighborhoods
BP GO:0001817 regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0001819 positive regulation of cytokine production IEP Predict GO terms from Neighborhoods
BP GO:0002429 immune response-activating cell surface receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0002768 immune response-regulating cell surface receptor signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0003714 transcription corepressor activity IEP Predict GO terms from Neighborhoods
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Predict GO terms from Neighborhoods
CC GO:0005743 mitochondrial inner membrane IEP Predict GO terms from Neighborhoods
CC GO:0005758 mitochondrial intermembrane space IEP Predict GO terms from Neighborhoods
CC GO:0005763 mitochondrial small ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0005929 cilium IEP Predict GO terms from Neighborhoods
CC GO:0005930 axoneme IEP Predict GO terms from Neighborhoods
BP GO:0006164 purine nucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006260 DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006275 regulation of DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006458 'de novo' protein folding IEP Predict GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0006754 ATP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006811 ion transport IEP Predict GO terms from Neighborhoods
BP GO:0006816 calcium ion transport IEP Predict GO terms from Neighborhoods
BP GO:0006839 mitochondrial transport IEP Predict GO terms from Neighborhoods
BP GO:0006851 mitochondrial calcium ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0006874 cellular calcium ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0007006 mitochondrial membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0008053 mitochondrial fusion IEP Predict GO terms from Neighborhoods
CC GO:0008180 COP9 signalosome IEP Predict GO terms from Neighborhoods
MF GO:0008320 protein transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0009141 nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009260 ribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010821 regulation of mitochondrion organization IEP Predict GO terms from Neighborhoods
BP GO:0010822 positive regulation of mitochondrion organization IEP Predict GO terms from Neighborhoods
BP GO:0010876 lipid localization IEP Predict GO terms from Neighborhoods
BP GO:0010918 positive regulation of mitochondrial membrane potential IEP Predict GO terms from Neighborhoods
CC GO:0014069 postsynaptic density IEP Predict GO terms from Neighborhoods
CC GO:0015629 actin cytoskeleton IEP Predict GO terms from Neighborhoods
CC GO:0015935 small ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0015986 proton motive force-driven ATP synthesis IEP Predict GO terms from Neighborhoods
BP GO:0016485 protein processing IEP Predict GO terms from Neighborhoods
BP GO:0017004 cytochrome complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0019897 extrinsic component of plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
CC GO:0022627 cytosolic small ribosomal subunit IEP Predict GO terms from Neighborhoods
MF GO:0022884 macromolecule transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0030150 protein import into mitochondrial matrix IEP Predict GO terms from Neighborhoods
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
BP GO:0030433 ubiquitin-dependent ERAD pathway IEP Predict GO terms from Neighborhoods
MF GO:0030544 Hsp70 protein binding IEP Predict GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Predict GO terms from Neighborhoods
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
CC GO:0031514 motile cilium IEP Predict GO terms from Neighborhoods
CC GO:0031970 organelle envelope lumen IEP Predict GO terms from Neighborhoods
BP GO:0032543 mitochondrial translation IEP Predict GO terms from Neighborhoods
BP GO:0032663 regulation of interleukin-2 production IEP Predict GO terms from Neighborhoods
BP GO:0032743 positive regulation of interleukin-2 production IEP Predict GO terms from Neighborhoods
BP GO:0032781 positive regulation of ATP-dependent activity IEP Predict GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:0034982 mitochondrial protein processing IEP Predict GO terms from Neighborhoods
BP GO:0035710 CD4-positive, alpha-beta T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0035966 response to topologically incorrect protein IEP Predict GO terms from Neighborhoods
BP GO:0035967 cellular response to topologically incorrect protein IEP Predict GO terms from Neighborhoods
CC GO:0036126 sperm flagellum IEP Predict GO terms from Neighborhoods
BP GO:0036503 ERAD pathway IEP Predict GO terms from Neighborhoods
BP GO:0042026 protein refolding IEP Predict GO terms from Neighborhoods
CC GO:0042101 T cell receptor complex IEP Predict GO terms from Neighborhoods
BP GO:0042110 T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0042391 regulation of membrane potential IEP Predict GO terms from Neighborhoods
BP GO:0042776 proton motive force-driven mitochondrial ATP synthesis IEP Predict GO terms from Neighborhoods
CC GO:0043197 dendritic spine IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043235 receptor complex IEP Predict GO terms from Neighborhoods
BP GO:0043462 regulation of ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0043620 regulation of DNA-templated transcription in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
MF GO:0044183 protein folding chaperone IEP Predict GO terms from Neighborhoods
CC GO:0044309 neuron spine IEP Predict GO terms from Neighborhoods
CC GO:0044391 ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predict GO terms from Neighborhoods
CC GO:0045121 membrane raft IEP Predict GO terms from Neighborhoods
BP GO:0045321 leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0045740 positive regulation of DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0045838 positive regulation of membrane potential IEP Predict GO terms from Neighborhoods
BP GO:0046034 ATP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046390 ribose phosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046631 alpha-beta T cell activation IEP Predict GO terms from Neighborhoods
BP GO:0046649 lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0048284 organelle fusion IEP Predict GO terms from Neighborhoods
BP GO:0050851 antigen receptor-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0050852 T cell receptor signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0051020 GTPase binding IEP Predict GO terms from Neighborhoods
MF GO:0051082 unfolded protein binding IEP Predict GO terms from Neighborhoods
BP GO:0051084 'de novo' post-translational protein folding IEP Predict GO terms from Neighborhoods
BP GO:0051085 chaperone cofactor-dependent protein refolding IEP Predict GO terms from Neighborhoods
MF GO:0051087 chaperone binding IEP Predict GO terms from Neighborhoods
MF GO:0051117 ATPase binding IEP Predict GO terms from Neighborhoods
BP GO:0051788 response to misfolded protein IEP Predict GO terms from Neighborhoods
BP GO:0051881 regulation of mitochondrial membrane potential IEP Predict GO terms from Neighborhoods
BP GO:0055074 calcium ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0061077 chaperone-mediated protein folding IEP Predict GO terms from Neighborhoods
CC GO:0061827 sperm head IEP Predict GO terms from Neighborhoods
BP GO:0065002 intracellular protein transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0070585 protein localization to mitochondrion IEP Predict GO terms from Neighborhoods
BP GO:0070588 calcium ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0071218 cellular response to misfolded protein IEP Predict GO terms from Neighborhoods
BP GO:0071806 protein transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0072503 cellular divalent inorganic cation homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predict GO terms from Neighborhoods
BP GO:0090083 regulation of inclusion body assembly IEP Predict GO terms from Neighborhoods
BP GO:0090084 negative regulation of inclusion body assembly IEP Predict GO terms from Neighborhoods
BP GO:0090296 regulation of mitochondrial DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0090297 positive regulation of mitochondrial DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0090329 regulation of DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0097201 negative regulation of transcription from RNA polymerase II promoter in response to stress IEP Predict GO terms from Neighborhoods
CC GO:0097224 sperm connecting piece IEP Predict GO terms from Neighborhoods
CC GO:0097729 9+2 motile cilium IEP Predict GO terms from Neighborhoods
CC GO:0098794 postsynapse IEP Predict GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Predict GO terms from Neighborhoods
CC GO:0098797 plasma membrane protein complex IEP Predict GO terms from Neighborhoods
CC GO:0098798 mitochondrial protein-containing complex IEP Predict GO terms from Neighborhoods
CC GO:0098799 outer mitochondrial membrane protein complex IEP Predict GO terms from Neighborhoods
CC GO:0098802 plasma membrane signaling receptor complex IEP Predict GO terms from Neighborhoods
CC GO:0098857 membrane microdomain IEP Predict GO terms from Neighborhoods
CC GO:0098978 glutamatergic synapse IEP Predict GO terms from Neighborhoods
CC GO:0099522 cytosolic region IEP Predict GO terms from Neighborhoods
CC GO:0099524 postsynaptic cytosol IEP Predict GO terms from Neighborhoods
CC GO:0099572 postsynaptic specialization IEP Predict GO terms from Neighborhoods
MF GO:0140318 protein transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0140677 molecular function activator activity IEP Predict GO terms from Neighborhoods
BP GO:1900208 regulation of cardiolipin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1900210 positive regulation of cardiolipin metabolic process IEP Predict GO terms from Neighborhoods
MF GO:1901611 phosphatidylglycerol binding IEP Predict GO terms from Neighborhoods
MF GO:1901612 cardiolipin binding IEP Predict GO terms from Neighborhoods
BP GO:1901858 regulation of mitochondrial DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901860 positive regulation of mitochondrial DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903725 regulation of phospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903727 positive regulation of phospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1904158 axonemal central apparatus assembly IEP Predict GO terms from Neighborhoods
BP GO:1990046 stress-induced mitochondrial fusion IEP Predict GO terms from Neighborhoods
BP GO:1990542 mitochondrial transmembrane transport IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
BP GO:2000105 positive regulation of DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 117 141
IPR011990 TPR-like_helical_dom_sf 287 395
IPR002885 Pentatricopeptide_repeat 183 216
IPR002885 Pentatricopeptide_repeat 117 143
IPR002885 Pentatricopeptide_repeat 253 286
IPR002885 Pentatricopeptide_repeat 288 321
IPR002885 Pentatricopeptide_repeat 326 355
IPR002885 Pentatricopeptide_repeat 179 226
IPR002885 Pentatricopeptide_repeat 280 313
No external refs found!