SOLTUB.AGRIA.G00000033135

Description : Transcription initiation factor tfiid subunit 6

Gene families : OG_02_0006812 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033135
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_36

Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	None	Extended
CC	GO:0000124	SAGA complex	IEA	AHRD
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0003712	transcription coregulator activity	None	Extended
MF	GO:0003713	transcription coactivator activity	IEA	AHRD
MF	GO:0005102	signaling receptor binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005669	transcription factor TFIID complex	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006473	protein acetylation	None	Extended
BP	GO:0006475	internal protein amino acid acetylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008285	negative regulation of cell population proliferation	IEA	AHRD
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009860	pollen tube growth	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009967	positive regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010647	positive regulation of cell communication	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0010942	positive regulation of cell death	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
MF	GO:0016251	RNA polymerase II general transcription initiation factor activity	IEA	AHRD
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016573	histone acetylation	IEA	AHRD
MF	GO:0017162	aryl hydrocarbon receptor binding	IEA	AHRD
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0018393	internal peptidyl-lysine acetylation	None	Extended
BP	GO:0018394	peptidyl-lysine acetylation	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023056	positive regulation of signaling	None	Extended
CC	GO:0031248	protein acetyltransferase complex	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0033276	transcription factor TFTC complex	IEA	AHRD
CC	GO:0034708	methyltransferase complex	None	Extended
CC	GO:0035097	histone methyltransferase complex	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0042981	regulation of apoptotic process	None	Extended
BP	GO:0043065	positive regulation of apoptotic process	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043068	positive regulation of programmed cell death	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043543	protein acylation	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044665	MLL1/2 complex	None	Extended
BP	GO:0045786	negative regulation of cell cycle	IEA	AHRD
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	None	Extended
CC	GO:0046695	SLIK (SAGA-like) complex	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051123	RNA polymerase II preinitiation complex assembly	IEA	AHRD
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
MF	GO:0060090	molecular adaptor activity	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060260	regulation of transcription initiation by RNA polymerase II	None	Extended
BP	GO:0060261	positive regulation of transcription initiation by RNA polymerase II	IEA	AHRD
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
MF	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070461	SAGA-type complex	None	Extended
BP	GO:0070897	transcription preinitiation complex assembly	None	Extended
CC	GO:0071339	MLL1 complex	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:0140223	general transcription initiation factor activity	None	Extended
MF	GO:0140297	DNA-binding transcription factor binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902493	acetyltransferase complex	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902531	regulation of intracellular signal transduction	None	Extended
BP	GO:1902533	positive regulation of intracellular signal transduction	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
CC	GO:1905368	peptidase complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2000142	regulation of DNA-templated transcription initiation	None	Extended
BP	GO:2000144	positive regulation of DNA-templated transcription initiation	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended
BP	GO:2001233	regulation of apoptotic signaling pathway	None	Extended
BP	GO:2001235	positive regulation of apoptotic signaling pathway	None	Extended
BP	GO:2001242	regulation of intrinsic apoptotic signaling pathway	None	Extended
BP	GO:2001244	positive regulation of intrinsic apoptotic signaling pathway	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
BP	GO:0000045	autophagosome assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0000323	lytic vacuole	IEP	Predict GO terms from Neighborhoods
BP	GO:0000422	autophagy of mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0001817	regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0001818	negative regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0001932	regulation of protein phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001933	negative regulation of protein phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002683	negative regulation of immune system process	IEP	Predict GO terms from Neighborhoods
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004725	protein tyrosine phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005539	glycosaminoglycan binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005543	phospholipid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005764	lysosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005815	microtubule organizing center	IEP	Predict GO terms from Neighborhoods
CC	GO:0005887	integral component of plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006469	negative regulation of protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006470	protein dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006497	protein lipidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006810	transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006914	autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007005	mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007030	Golgi organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007033	vacuole organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007155	cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007162	negative regulation of cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007166	cell surface receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007276	gamete generation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007411	axon guidance	IEP	Predict GO terms from Neighborhoods
MF	GO:0008289	lipid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009056	catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009896	positive regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010498	proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010506	regulation of autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010508	positive regulation of autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010563	negative regulation of phosphorus metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010975	regulation of neuron projection development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010977	negative regulation of neuron projection development	IEP	Predict GO terms from Neighborhoods
CC	GO:0012505	endomembrane system	IEP	Predict GO terms from Neighborhoods
BP	GO:0016311	dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0016477	cell migration	IEP	Predict GO terms from Neighborhoods
MF	GO:0016791	phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0019898	extrinsic component of membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0019899	enzyme binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0021537	telencephalon development	IEP	Predict GO terms from Neighborhoods
BP	GO:0022411	cellular component disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0030030	cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030097	hemopoiesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030155	regulation of cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0030855	epithelial cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031175	neuron projection development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031331	positive regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031344	regulation of cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031345	negative regulation of cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031346	positive regulation of cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031400	negative regulation of protein modification process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031410	cytoplasmic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0031468	nuclear membrane reassembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0031982	vesicle	IEP	Predict GO terms from Neighborhoods
MF	GO:0032182	ubiquitin-like protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032266	phosphatidylinositol-3-phosphate binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0033549	MAP kinase phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0033550	MAP kinase tyrosine phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0033673	negative regulation of kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0034045	phagophore assembly site membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034497	protein localization to phagophore assembly site	IEP	Predict GO terms from Neighborhoods
MF	GO:0035091	phosphatidylinositol binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035335	peptidyl-tyrosine dephosphorylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0036477	somatodendritic compartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0040012	regulation of locomotion	IEP	Predict GO terms from Neighborhoods
BP	GO:0040013	negative regulation of locomotion	IEP	Predict GO terms from Neighborhoods
BP	GO:0042325	regulation of phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042326	negative regulation of phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0043005	neuron projection	IEP	Predict GO terms from Neighborhoods
BP	GO:0043086	negative regulation of catalytic activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0043130	ubiquitin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043408	regulation of MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0043549	regulation of kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0044248	cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044804	autophagy of nucleus	IEP	Predict GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0045202	synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0045859	regulation of protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045936	negative regulation of phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048534	hematopoietic or lymphoid organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048870	cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:0050767	regulation of neurogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050807	regulation of synapse organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0050839	cell adhesion molecule binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0050878	regulation of body fluid levels	IEP	Predict GO terms from Neighborhoods
MF	GO:0051117	ATPase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051129	negative regulation of cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051234	establishment of localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051271	obsolete negative regulation of cellular component movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0051338	regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051348	negative regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051960	regulation of nervous system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051962	positive regulation of nervous system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051963	regulation of synapse assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0060284	regulation of cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061025	membrane fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0061387	regulation of extent of cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0061726	mitochondrion disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Predict GO terms from Neighborhoods
MF	GO:0062078	TSC1-TSC2 complex binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070925	organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0071709	membrane assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0071763	nuclear membrane organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0097485	neuron projection guidance	IEP	Predict GO terms from Neighborhoods
CC	GO:0097708	intracellular vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0098609	cell-cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0098742	cell-cell adhesion via plasma-membrane adhesion molecules	IEP	Predict GO terms from Neighborhoods
CC	GO:0098793	presynapse	IEP	Predict GO terms from Neighborhoods
CC	GO:0098794	postsynapse	IEP	Predict GO terms from Neighborhoods
CC	GO:0098984	neuron to neuron synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0120035	regulation of plasma membrane bounded cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0120036	plasma membrane bounded cell projection organization	IEP	Predict GO terms from Neighborhoods
MF	GO:1901681	sulfur compound binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901888	regulation of cell junction assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	Predict GO terms from Neighborhoods
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1903008	organelle disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1905037	autophagosome organization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011442	TAF6_C	262	349
IPR016024	ARM-type_fold	205	386
IPR004823	TAF_TATA-bd_Histone-like_dom	1	65
IPR009072	Histone-fold	4	76

External Links

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SOLTUB.AGRIA.G00000033135

Expression Profile

Co-expression Networks

Functional Annotation