SOLTUB.AGRIA.G00000035207


Description : Polyadenylate-binding protein


Gene families : OG_02_0010866 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000035207
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_90


Type GO Term Name Evidence Source
MF GO:0003730 mRNA 3'-UTR binding IEA AHRD
MF GO:0003743 translation initiation factor activity IEA AHRD
CC GO:0005634 nucleus IEA AHRD
CC GO:0005829 cytosol IEA AHRD
CC GO:0005844 polysome IEA AHRD
BP GO:0006397 mRNA processing IEA AHRD
BP GO:0006446 regulation of translational initiation IEA AHRD
BP GO:0007507 heart development IEA AHRD
BP GO:0007596 blood coagulation IEA AHRD
MF GO:0008143 poly(A) binding IEA AHRD
MF GO:0008266 poly(U) RNA binding IEA AHRD
CC GO:0030425 dendrite IEA AHRD
BP GO:0031047 gene silencing by RNA IEA AHRD
CC GO:0031252 cell leading edge IEA AHRD
MF GO:0031370 eukaryotic initiation factor 4G binding IEA AHRD
BP GO:0043009 chordate embryonic development IEA AHRD
MF GO:0043621 protein self-association IEA AHRD
CC GO:0045202 synapse IEA AHRD
BP GO:0046686 response to cadmium ion IEA AHRD
BP GO:0048255 mRNA stabilization IEA AHRD
BP GO:0060212 negative regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA AHRD
BP GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA AHRD
BP GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA AHRD
CC GO:1990124 messenger ribonucleoprotein complex IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000911 cytokinesis by cell plate formation IEP Predict GO terms from Neighborhoods
MF GO:0001671 ATPase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0002097 tRNA wobble base modification IEP Predict GO terms from Neighborhoods
BP GO:0002098 tRNA wobble uridine modification IEP Predict GO terms from Neighborhoods
MF GO:0003714 transcription corepressor activity IEP Predict GO terms from Neighborhoods
MF GO:0004564 beta-fructofuranosidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004575 sucrose alpha-glucosidase activity IEP Predict GO terms from Neighborhoods
CC GO:0005930 axoneme IEP Predict GO terms from Neighborhoods
BP GO:0005982 starch metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0005984 disaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0005985 sucrose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0005987 sucrose catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006404 RNA import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006458 'de novo' protein folding IEP Predict GO terms from Neighborhoods
BP GO:0006626 protein targeting to mitochondrion IEP Predict GO terms from Neighborhoods
BP GO:0006790 sulfur compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006810 transport IEP Predict GO terms from Neighborhoods
BP GO:0006839 mitochondrial transport IEP Predict GO terms from Neighborhoods
BP GO:0006892 post-Golgi vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:0006896 Golgi to vacuole transport IEP Predict GO terms from Neighborhoods
BP GO:0006898 receptor-mediated endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0006913 nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
BP GO:0006986 response to unfolded protein IEP Predict GO terms from Neighborhoods
BP GO:0008104 protein localization IEP Predict GO terms from Neighborhoods
MF GO:0008198 ferrous iron binding IEP Predict GO terms from Neighborhoods
BP GO:0009311 oligosaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009313 oligosaccharide catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0009504 cell plate IEP Predict GO terms from Neighborhoods
BP GO:0009553 embryo sac development IEP Predict GO terms from Neighborhoods
BP GO:0009911 positive regulation of flower development IEP Predict GO terms from Neighborhoods
BP GO:0010016 shoot system morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010022 meristem determinacy IEP Predict GO terms from Neighborhoods
BP GO:0010036 response to boron-containing substance IEP Predict GO terms from Neighborhoods
BP GO:0010093 specification of floral organ identity IEP Predict GO terms from Neighborhoods
BP GO:0010094 specification of carpel identity IEP Predict GO terms from Neighborhoods
BP GO:0010097 specification of stamen identity IEP Predict GO terms from Neighborhoods
BP GO:0010582 floral meristem determinacy IEP Predict GO terms from Neighborhoods
BP GO:0010622 specification of ovule identity IEP Predict GO terms from Neighborhoods
BP GO:0010821 regulation of mitochondrion organization IEP Predict GO terms from Neighborhoods
BP GO:0015031 protein transport IEP Predict GO terms from Neighborhoods
MF GO:0015926 glucosidase activity IEP Predict GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0016226 iron-sulfur cluster assembly IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
BP GO:0030100 regulation of endocytosis IEP Predict GO terms from Neighborhoods
CC GO:0030135 coated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030136 clathrin-coated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030139 endocytic vesicle IEP Predict GO terms from Neighborhoods
MF GO:0030276 clathrin binding IEP Predict GO terms from Neighborhoods
BP GO:0030433 ubiquitin-dependent ERAD pathway IEP Predict GO terms from Neighborhoods
MF GO:0030544 Hsp70 protein binding IEP Predict GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Predict GO terms from Neighborhoods
BP GO:0031163 metallo-sulfur cluster assembly IEP Predict GO terms from Neighborhoods
BP GO:0032781 positive regulation of ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:0032878 regulation of establishment or maintenance of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:0033036 macromolecule localization IEP Predict GO terms from Neighborhoods
BP GO:0034756 regulation of iron ion transport IEP Predict GO terms from Neighborhoods
BP GO:0034757 negative regulation of iron ion transport IEP Predict GO terms from Neighborhoods
BP GO:0034759 regulation of iron ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0034760 negative regulation of iron ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0034763 negative regulation of transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0034766 negative regulation of ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0035719 tRNA import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0035966 response to topologically incorrect protein IEP Predict GO terms from Neighborhoods
BP GO:0036503 ERAD pathway IEP Predict GO terms from Neighborhoods
BP GO:0042689 regulation of crystal cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0042691 positive regulation of crystal cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0043271 negative regulation of ion transport IEP Predict GO terms from Neighborhoods
BP GO:0043457 regulation of cellular respiration IEP Predict GO terms from Neighborhoods
BP GO:0043462 regulation of ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predict GO terms from Neighborhoods
BP GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0043620 regulation of DNA-templated transcription in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0044093 positive regulation of molecular function IEP Predict GO terms from Neighborhoods
MF GO:0044183 protein folding chaperone IEP Predict GO terms from Neighborhoods
BP GO:0044275 cellular carbohydrate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044571 [2Fe-2S] cluster assembly IEP Predict GO terms from Neighborhoods
BP GO:0044572 [4Fe-4S] cluster assembly IEP Predict GO terms from Neighborhoods
BP GO:0045047 protein targeting to ER IEP Predict GO terms from Neighborhoods
BP GO:0045184 establishment of protein localization IEP Predict GO terms from Neighborhoods
CC GO:0045334 clathrin-coated endocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0045610 regulation of hemocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045612 positive regulation of hemocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0046352 disaccharide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046907 intracellular transport IEP Predict GO terms from Neighborhoods
BP GO:0048281 inflorescence morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048283 indeterminate inflorescence morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048285 organelle fission IEP Predict GO terms from Neighborhoods
BP GO:0048459 floral whorl structural organization IEP Predict GO terms from Neighborhoods
BP GO:0048481 plant ovule development IEP Predict GO terms from Neighborhoods
BP GO:0048532 anatomical structure arrangement IEP Predict GO terms from Neighborhoods
BP GO:0048766 root hair initiation IEP Predict GO terms from Neighborhoods
BP GO:0048832 specification of plant organ number IEP Predict GO terms from Neighborhoods
BP GO:0048833 specification of floral organ number IEP Predict GO terms from Neighborhoods
BP GO:0050657 nucleic acid transport IEP Predict GO terms from Neighborhoods
BP GO:0050658 RNA transport IEP Predict GO terms from Neighborhoods
BP GO:0050793 regulation of developmental process IEP Predict GO terms from Neighborhoods
BP GO:0050821 protein stabilization IEP Predict GO terms from Neighborhoods
BP GO:0051031 tRNA transport IEP Predict GO terms from Neighborhoods
BP GO:0051049 regulation of transport IEP Predict GO terms from Neighborhoods
MF GO:0051082 unfolded protein binding IEP Predict GO terms from Neighborhoods
BP GO:0051084 'de novo' post-translational protein folding IEP Predict GO terms from Neighborhoods
BP GO:0051085 chaperone cofactor-dependent protein refolding IEP Predict GO terms from Neighborhoods
MF GO:0051087 chaperone binding IEP Predict GO terms from Neighborhoods
BP GO:0051094 positive regulation of developmental process IEP Predict GO terms from Neighborhoods
MF GO:0051117 ATPase binding IEP Predict GO terms from Neighborhoods
BP GO:0051169 nuclear transport IEP Predict GO terms from Neighborhoods
BP GO:0051170 import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0051236 establishment of RNA localization IEP Predict GO terms from Neighborhoods
BP GO:0051339 regulation of lyase activity IEP Predict GO terms from Neighborhoods
BP GO:0051349 positive regulation of lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0051536 iron-sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0051540 metal cluster binding IEP Predict GO terms from Neighborhoods
BP GO:0051649 establishment of localization in cell IEP Predict GO terms from Neighborhoods
BP GO:0052575 carbohydrate localization IEP Predict GO terms from Neighborhoods
BP GO:0052576 carbohydrate storage IEP Predict GO terms from Neighborhoods
BP GO:0061077 chaperone-mediated protein folding IEP Predict GO terms from Neighborhoods
BP GO:0061640 cytoskeleton-dependent cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0070585 protein localization to mitochondrion IEP Predict GO terms from Neighborhoods
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0071836 nectar secretion IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0072583 clathrin-dependent endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predict GO terms from Neighborhoods
BP GO:0080060 integument development IEP Predict GO terms from Neighborhoods
BP GO:0080112 seed growth IEP Predict GO terms from Neighborhoods
BP GO:0090083 regulation of inclusion body assembly IEP Predict GO terms from Neighborhoods
BP GO:0090084 negative regulation of inclusion body assembly IEP Predict GO terms from Neighborhoods
MF GO:0090599 alpha-glucosidase activity IEP Predict GO terms from Neighborhoods
BP GO:0090701 specification of plant organ identity IEP Predict GO terms from Neighborhoods
BP GO:0097201 negative regulation of transcription from RNA polymerase II promoter in response to stress IEP Predict GO terms from Neighborhoods
CC GO:0097224 sperm connecting piece IEP Predict GO terms from Neighborhoods
MF GO:0098772 molecular function regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0098793 presynapse IEP Predict GO terms from Neighborhoods
CC GO:0098794 postsynapse IEP Predict GO terms from Neighborhoods
BP GO:0099003 vesicle-mediated transport in synapse IEP Predict GO terms from Neighborhoods
MF GO:0140677 molecular function activator activity IEP Predict GO terms from Neighborhoods
BP GO:1900034 regulation of cellular response to heat IEP Predict GO terms from Neighborhoods
BP GO:1901857 positive regulation of cellular respiration IEP Predict GO terms from Neighborhoods
BP GO:1902956 regulation of mitochondrial electron transport, NADH to ubiquinone IEP Predict GO terms from Neighborhoods
BP GO:1902958 positive regulation of mitochondrial electron transport, NADH to ubiquinone IEP Predict GO terms from Neighborhoods
BP GO:1903715 regulation of aerobic respiration IEP Predict GO terms from Neighborhoods
BP GO:1904062 regulation of cation transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1904063 negative regulation of cation transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1904158 axonemal central apparatus assembly IEP Predict GO terms from Neighborhoods
BP GO:1904232 regulation of aconitate hydratase activity IEP Predict GO terms from Neighborhoods
BP GO:1904234 positive regulation of aconitate hydratase activity IEP Predict GO terms from Neighborhoods
BP GO:1904438 regulation of iron ion import across plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:1904439 negative regulation of iron ion import across plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:2000114 regulation of establishment of cell polarity IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR035979 RBD_domain_sf 289 382
IPR035979 RBD_domain_sf 5 99
IPR000504 RRM_dom 193 261
IPR000504 RRM_dom 102 170
IPR000504 RRM_dom 296 364
IPR000504 RRM_dom 14 83
IPR006515 PABP_1234 12 617
IPR035979 RBD_domain_sf 101 272
IPR036053 PABP-dom 467 626
IPR002004 PABP_HYD 551 616
No external refs found!