SOLTUB.AGRIA.G00000004074


Description : RecQ family ATP-dependent DNA helicase


Gene families : OG_02_0012345 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000004074
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_57


Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEA AHRD
MF GO:0000287 magnesium ion binding IEA AHRD
MF GO:0000400 four-way junction DNA binding IEA AHRD
MF GO:0000403 Y-form DNA binding IEA AHRD
MF GO:0000405 bubble DNA binding IEA AHRD
BP GO:0000729 DNA double-strand break processing IEA AHRD
BP GO:0000731 DNA synthesis involved in DNA repair IEA AHRD
BP GO:0000732 strand displacement IEA AHRD
CC GO:0000781 chromosome, telomeric region IEA AHRD
CC GO:0000800 lateral element IEA AHRD
CC GO:0001673 male germ cell nucleus IEA AHRD
MF GO:0002039 p53 binding IEA AHRD
MF GO:0005524 ATP binding IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005813 centrosome IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0006268 DNA unwinding involved in DNA replication IEA AHRD
BP GO:0006284 base-excision repair IEA AHRD
BP GO:0006303 double-strand break repair via nonhomologous end joining IEA AHRD
BP GO:0006979 response to oxidative stress IEA AHRD
BP GO:0007095 mitotic G2 DNA damage checkpoint signaling IEA AHRD
MF GO:0008270 zinc ion binding IEA AHRD
MF GO:0008408 3'-5' exonuclease activity IEA AHRD
BP GO:0009267 cellular response to starvation IEA AHRD
MF GO:0009378 four-way junction helicase activity IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
BP GO:0010165 response to X-ray IEA AHRD
BP GO:0010225 response to UV-C IEA AHRD
BP GO:0010259 multicellular organism aging IEA AHRD
CC GO:0016363 nuclear matrix IEA AHRD
CC GO:0016592 mediator complex IEA AHRD
CC GO:0016605 PML body IEA AHRD
CC GO:0016607 nuclear speck IEA AHRD
MF GO:0016887 ATP hydrolysis activity IEA AHRD
MF GO:0017116 single-stranded DNA helicase activity IEA AHRD
CC GO:0017117 single-stranded DNA-dependent ATP-dependent DNA helicase complex IEA AHRD
MF GO:0030145 manganese ion binding IEA AHRD
CC GO:0030894 replisome IEA AHRD
BP GO:0031297 replication fork processing IEA AHRD
MF GO:0032405 MutLalpha complex binding IEA AHRD
MF GO:0036310 ATP-dependent DNA/DNA annealing activity IEA AHRD
BP GO:0040009 regulation of growth rate IEA AHRD
BP GO:0042631 cellular response to water deprivation IEA AHRD
MF GO:0042803 protein homodimerization activity IEA AHRD
MF GO:0043138 3'-5' DNA helicase activity IEA AHRD
CC GO:0043590 bacterial nucleoid IEA AHRD
BP GO:0044806 G-quadruplex DNA unwinding IEA AHRD
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEA AHRD
CC GO:0045120 pronucleus IEA AHRD
BP GO:0045893 positive regulation of DNA-templated transcription IEA AHRD
BP GO:0045950 negative regulation of mitotic recombination IEA AHRD
BP GO:0046632 alpha-beta T cell differentiation IEA AHRD
BP GO:0046641 positive regulation of alpha-beta T cell proliferation IEA AHRD
BP GO:0051098 regulation of binding IEA AHRD
BP GO:0051260 protein homooligomerization IEA AHRD
BP GO:0051345 positive regulation of hydrolase activity IEA AHRD
BP GO:0051782 negative regulation of cell division IEA AHRD
MF GO:0051880 G-quadruplex DNA binding IEA AHRD
MF GO:0061749 forked DNA-dependent helicase activity IEA AHRD
BP GO:0061820 telomeric D-loop disassembly IEA AHRD
MF GO:0061821 telomeric D-loop binding IEA AHRD
BP GO:0070244 negative regulation of thymocyte apoptotic process IEA AHRD
MF GO:0070337 3'-flap-structured DNA binding IEA AHRD
BP GO:0070417 cellular response to cold IEA AHRD
BP GO:0071215 cellular response to abscisic acid stimulus IEA AHRD
BP GO:0071480 cellular response to gamma radiation IEA AHRD
BP GO:0072711 cellular response to hydroxyurea IEA AHRD
BP GO:0072757 cellular response to camptothecin IEA AHRD
BP GO:0090329 regulation of DNA-templated DNA replication IEA AHRD
BP GO:0090399 replicative senescence IEA AHRD
BP GO:0098530 positive regulation of strand invasion IEA AHRD
BP GO:1901291 negative regulation of double-strand break repair via single-strand annealing IEA AHRD
BP GO:1902570 protein localization to nucleolus IEA AHRD
BP GO:1905168 positive regulation of double-strand break repair via homologous recombination IEA AHRD
MF GO:1905773 8-hydroxy-2'-deoxyguanosine DNA binding IEA AHRD
BP GO:1990414 replication-born double-strand break repair via sister chromatid exchange IEA AHRD
BP GO:1990918 double-strand break repair involved in meiotic recombination IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000302 response to reactive oxygen species IEP Predict GO terms from Neighborhoods
BP GO:0002230 positive regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0002237 response to molecule of bacterial origin IEP Predict GO terms from Neighborhoods
MF GO:0003712 transcription coregulator activity IEP Predict GO terms from Neighborhoods
MF GO:0003713 transcription coactivator activity IEP Predict GO terms from Neighborhoods
BP GO:0006482 protein demethylation IEP Predict GO terms from Neighborhoods
BP GO:0008214 protein dealkylation IEP Predict GO terms from Neighborhoods
BP GO:0009555 pollen development IEP Predict GO terms from Neighborhoods
BP GO:0009639 response to red or far red light IEP Predict GO terms from Neighborhoods
BP GO:0009642 response to light intensity IEP Predict GO terms from Neighborhoods
BP GO:0009644 response to high light intensity IEP Predict GO terms from Neighborhoods
BP GO:0009648 photoperiodism IEP Predict GO terms from Neighborhoods
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009789 positive regulation of abscisic acid-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009819 drought recovery IEP Predict GO terms from Neighborhoods
BP GO:0009825 multidimensional cell growth IEP Predict GO terms from Neighborhoods
BP GO:0009832 plant-type cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009834 plant-type secondary cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009835 fruit ripening IEP Predict GO terms from Neighborhoods
BP GO:0009908 flower development IEP Predict GO terms from Neighborhoods
BP GO:0009962 regulation of flavonoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010114 response to red light IEP Predict GO terms from Neighborhoods
BP GO:0010150 leaf senescence IEP Predict GO terms from Neighborhoods
BP GO:0010200 response to chitin IEP Predict GO terms from Neighborhoods
BP GO:0010224 response to UV-B IEP Predict GO terms from Neighborhoods
BP GO:0010267 ta-siRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0016032 viral process IEP Predict GO terms from Neighborhoods
BP GO:0016570 histone modification IEP Predict GO terms from Neighborhoods
BP GO:0016577 histone demethylation IEP Predict GO terms from Neighborhoods
BP GO:0021700 developmental maturation IEP Predict GO terms from Neighborhoods
BP GO:0022411 cellular component disassembly IEP Predict GO terms from Neighborhoods
BP GO:0030422 siRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0031930 mitochondria-nucleus signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0034599 cellular response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:0034614 cellular response to reactive oxygen species IEP Predict GO terms from Neighborhoods
BP GO:0034720 histone H3-K4 demethylation IEP Predict GO terms from Neighborhoods
BP GO:0042542 response to hydrogen peroxide IEP Predict GO terms from Neighborhoods
BP GO:0042546 cell wall biogenesis IEP Predict GO terms from Neighborhoods
MF GO:0043621 protein self-association IEP Predict GO terms from Neighborhoods
BP GO:0044085 cellular component biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048367 shoot system development IEP Predict GO terms from Neighborhoods
BP GO:0048573 photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048829 root cap development IEP Predict GO terms from Neighborhoods
BP GO:0050688 regulation of defense response to virus IEP Predict GO terms from Neighborhoods
BP GO:0050691 regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0051301 cell division IEP Predict GO terms from Neighborhoods
BP GO:0060966 regulation of gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0062197 cellular response to chemical stress IEP Predict GO terms from Neighborhoods
BP GO:0070076 histone lysine demethylation IEP Predict GO terms from Neighborhoods
BP GO:0070301 cellular response to hydrogen peroxide IEP Predict GO terms from Neighborhoods
BP GO:0070918 small regulatory ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0070988 demethylation IEP Predict GO terms from Neighborhoods
BP GO:0071365 cellular response to auxin stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0071695 anatomical structure maturation IEP Predict GO terms from Neighborhoods
BP GO:0090567 reproductive shoot system development IEP Predict GO terms from Neighborhoods
BP GO:0090601 enucleation IEP Predict GO terms from Neighborhoods
BP GO:0090602 sieve element enucleation IEP Predict GO terms from Neighborhoods
BP GO:0090693 plant organ senescence IEP Predict GO terms from Neighborhoods
BP GO:1900101 regulation of endoplasmic reticulum unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1900407 regulation of cellular response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:1900409 positive regulation of cellular response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:1901419 regulation of response to alcohol IEP Predict GO terms from Neighborhoods
BP GO:1902882 regulation of response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:1902884 positive regulation of response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:1905897 regulation of response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:1905898 positive regulation of response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:1905957 regulation of cellular response to alcohol IEP Predict GO terms from Neighborhoods
BP GO:2000377 regulation of reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR032284 RecQ_Zn-bd 637 688
IPR001650 Helicase_C 521 616
IPR009060 UBA-like_sf 4 41
IPR004589 DNA_helicase_ATP-dep_RecQ 157 387
IPR027417 P-loop_NTPase 206 627
IPR011545 DEAD/DEAH_box_helicase_dom 169 337
No external refs found!