SOLTUB.AGRIA.G00000041167

Description : Zinc phosphodiesterase ELAC protein 2

Gene families : OG_02_0021369 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041167
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_254

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
BP	GO:0031426	polycistronic mRNA processing	IEA	AHRD
CC	GO:0031974	membrane-enclosed lumen	None	Extended
BP	GO:0032501	multicellular organismal process	IEA	AHRD
BP	GO:0034414	tRNA 3'-trailer cleavage, endonucleolytic	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042779	tRNA 3'-trailer cleavage	None	Extended
MF	GO:0042781	3'-tRNA processing endoribonuclease activity	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043233	organelle lumen	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070013	intracellular organelle lumen	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0090501	RNA phosphodiester bond hydrolysis	None	Extended
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1905267	endonucleolytic cleavage involved in tRNA processing	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000018	regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
MF	GO:0000217	DNA secondary structure binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000266	mitochondrial fission	IEP	Predict GO terms from Neighborhoods
BP	GO:0000422	autophagy of mitochondrion	IEP	Predict GO terms from Neighborhoods
MF	GO:0003678	DNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003691	double-stranded telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005929	cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0006289	nucleotide-excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007005	mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007063	regulation of sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007399	nervous system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0008356	asymmetric cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0010070	zygote asymmetric cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0010564	regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010948	negative regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
CC	GO:0015630	microtubule cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0016236	macroautophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0016559	peroxisome fission	IEP	Predict GO terms from Neighborhoods
BP	GO:0016584	obsolete nucleosome positioning	IEP	Predict GO terms from Neighborhoods
BP	GO:0030261	chromosome condensation	IEP	Predict GO terms from Neighborhoods
MF	GO:0031490	chromatin DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031491	nucleosome binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031492	nucleosomal DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031936	obsolete negative regulation of chromatin silencing	IEP	Predict GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Predict GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Predict GO terms from Neighborhoods
BP	GO:0033120	positive regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
MF	GO:0042162	telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0043473	pigmentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045786	negative regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045875	negative regulation of sister chromatid cohesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0045910	negative regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048026	positive regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048519	negative regulation of biological process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048523	negative regulation of cellular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048705	skeletal system morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050685	positive regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051301	cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0061726	mitochondrion disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070316	regulation of G0 to G1 transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0070317	negative regulation of G0 to G1 transition	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Predict GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1903008	organelle disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1903313	positive regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905744	regulation of mRNA cis splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:1905746	positive regulation of mRNA cis splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
MF	GO:1990841	promoter-specific chromatin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2001251	negative regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036866	RibonucZ/Hydroxyglut_hydro	49	310
IPR001279	Metallo-B-lactamas	545	772
IPR027794	tRNase_Z_dom	47	101
IPR036866	RibonucZ/Hydroxyglut_hydro	514	800

External Links

No external refs found!

SOLTUB.AGRIA.G00000041167

Expression Profile

Co-expression Networks

Functional Annotation