Coexpression cluster: Cluster_254 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1903311 regulation of mRNA metabolic process 17.74% (11/62) 4.08 0.0 0.0
GO:0061013 regulation of mRNA catabolic process 11.29% (7/62) 4.24 0.0 4.3e-05
GO:0050684 regulation of mRNA processing 11.29% (7/62) 4.24 0.0 4.3e-05
GO:0006396 RNA processing 22.58% (14/62) 2.38 0.0 8.6e-05
GO:0003723 RNA binding 27.42% (17/62) 2.08 0.0 9.5e-05
GO:0016070 RNA metabolic process 25.81% (16/62) 2.11 0.0 0.000111
GO:0090304 nucleic acid metabolic process 29.03% (18/62) 1.82 2e-06 0.000314
GO:0036002 pre-mRNA binding 6.45% (4/62) 5.15 5e-06 0.000883
GO:0016604 nuclear body 12.9% (8/62) 2.9 1.2e-05 0.001599
GO:0005681 spliceosomal complex 9.68% (6/62) 3.6 1.1e-05 0.001615
GO:0000398 mRNA splicing, via spliceosome 8.06% (5/62) 4.03 1.4e-05 0.00179
GO:0043488 regulation of mRNA stability 8.06% (5/62) 3.95 1.9e-05 0.002142
GO:0006397 mRNA processing 11.29% (7/62) 3.05 2.1e-05 0.00226
GO:0006139 nucleobase-containing compound metabolic process 29.03% (18/62) 1.52 2.7e-05 0.002452
GO:0009894 regulation of catabolic process 14.52% (9/62) 2.48 3.1e-05 0.002488
GO:0008380 RNA splicing 9.68% (6/62) 3.37 2.6e-05 0.002544
GO:0003676 nucleic acid binding 35.48% (22/62) 1.29 3.4e-05 0.00256
GO:0031329 regulation of cellular catabolic process 12.9% (8/62) 2.67 3.6e-05 0.002619
GO:0043487 regulation of RNA stability 8.06% (5/62) 3.8 3.1e-05 0.002623
GO:0043484 regulation of RNA splicing 8.06% (5/62) 3.68 4.6e-05 0.002731
GO:0010608 post-transcriptional regulation of gene expression 12.9% (8/62) 2.61 4.8e-05 0.002736
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 8.06% (5/62) 3.72 4e-05 0.002738
GO:0003730 mRNA 3'-UTR binding 6.45% (4/62) 4.36 4.5e-05 0.00282
GO:0031016 pancreas development 3.23% (2/62) 7.49 5.2e-05 0.002838
GO:0000375 RNA splicing, via transesterification reactions 8.06% (5/62) 3.69 4.5e-05 0.002934
GO:0019219 regulation of nucleobase-containing compound metabolic process 29.03% (18/62) 1.43 6.3e-05 0.003201
GO:0006376 mRNA splice site selection 4.84% (3/62) 5.3 6.2e-05 0.003296
GO:0010628 positive regulation of gene expression 12.9% (8/62) 2.45 0.0001 0.004921
GO:0005684 U2-type spliceosomal complex 6.45% (4/62) 4.02 0.000111 0.005073
GO:0097550 transcription preinitiation complex 3.23% (2/62) 6.98 0.00011 0.005227
GO:0016071 mRNA metabolic process 12.9% (8/62) 2.37 0.000154 0.006807
GO:0048024 regulation of mRNA splicing, via spliceosome 6.45% (4/62) 3.76 0.000223 0.00957
GO:2000628 regulation of miRNA metabolic process 3.23% (2/62) 6.39 0.000256 0.010663
GO:0051252 regulation of RNA metabolic process 25.81% (16/62) 1.38 0.000268 0.010814
GO:0000389 mRNA 3'-splice site recognition 3.23% (2/62) 6.21 0.000332 0.012996
GO:0048513 animal organ development 12.9% (8/62) 2.19 0.000352 0.013418
GO:0000243 commitment complex 3.23% (2/62) 6.13 0.000373 0.013452
GO:1990904 ribonucleoprotein complex 12.9% (8/62) 2.18 0.000372 0.013778
GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding 3.23% (2/62) 5.98 0.000462 0.016244
GO:0010468 regulation of gene expression 29.03% (18/62) 1.18 0.000563 0.018402
GO:0140513 nuclear protein-containing complex 14.52% (9/62) 1.93 0.000537 0.018424
GO:0051123 RNA polymerase II preinitiation complex assembly 3.23% (2/62) 5.84 0.00056 0.018748
GO:0003727 single-stranded RNA binding 6.45% (4/62) 3.32 0.000712 0.022722
GO:0046483 heterocycle metabolic process 29.03% (18/62) 1.14 0.000786 0.023976
GO:0070897 transcription preinitiation complex assembly 3.23% (2/62) 5.6 0.000785 0.024478
GO:0140098 catalytic activity, acting on RNA 9.68% (6/62) 2.43 0.000847 0.025276
GO:0051171 regulation of nitrogen compound metabolic process 30.65% (19/62) 1.07 0.000947 0.027641
GO:0140640 catalytic activity, acting on a nucleic acid 11.29% (7/62) 2.12 0.001101 0.03147
GO:0034641 cellular nitrogen compound metabolic process 29.03% (18/62) 1.09 0.001188 0.033251
GO:0030626 U12 snRNA binding 1.61% (1/62) 9.3 0.001586 0.03627
GO:0002144 cytosolic tRNA wobble base thiouridylase complex 1.61% (1/62) 9.3 0.001586 0.03627
GO:0106054 tRNA U34 sulfurtransferase activity 1.61% (1/62) 9.3 0.001586 0.03627
GO:0039595 induction by virus of catabolism of host mRNA 1.61% (1/62) 9.3 0.001586 0.03627
GO:0039644 suppression by virus of host NF-kappaB cascade 1.61% (1/62) 9.3 0.001586 0.03627
GO:0002063 chondrocyte development 1.61% (1/62) 9.3 0.001586 0.03627
GO:0060734 regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation 1.61% (1/62) 9.3 0.001586 0.03627
GO:1902010 negative regulation of translation in response to endoplasmic reticulum stress 1.61% (1/62) 9.3 0.001586 0.03627
GO:1903786 regulation of glutathione biosynthetic process 1.61% (1/62) 9.3 0.001586 0.03627
GO:1903788 positive regulation of glutathione biosynthetic process 1.61% (1/62) 9.3 0.001586 0.03627
GO:0061014 positive regulation of mRNA catabolic process 4.84% (3/62) 3.8 0.001341 0.036796
GO:0005689 U12-type spliceosomal complex 3.23% (2/62) 5.05 0.001677 0.037727
GO:0005669 transcription factor TFIID complex 3.23% (2/62) 5.01 0.001766 0.037863
GO:0016251 RNA polymerase II general transcription initiation factor activity 3.23% (2/62) 5.01 0.001766 0.037863
GO:0003677 DNA binding 20.97% (13/62) 1.31 0.001761 0.038969
GO:0007417 central nervous system development 3.23% (2/62) 4.98 0.001857 0.039203
GO:0022618 ribonucleoprotein complex assembly 6.45% (4/62) 2.91 0.001999 0.04156
GO:0080090 regulation of primary metabolic process 30.65% (19/62) 0.98 0.002069 0.042374
GO:0005686 U2 snRNP 3.23% (2/62) 4.87 0.002144 0.042623
GO:2000112 regulation of cellular macromolecule biosynthetic process 9.68% (6/62) 2.17 0.002115 0.042667
GO:0000245 spliceosomal complex assembly 3.23% (2/62) 4.81 0.002345 0.044692
GO:0004540 ribonuclease activity 4.84% (3/62) 3.52 0.002327 0.044968
GO:0016607 nuclear speck 6.45% (4/62) 2.86 0.002294 0.04497
GO:0071826 ribonucleoprotein complex subunit organization 6.45% (4/62) 2.83 0.002465 0.04633
GO:0004532 exoribonuclease activity 3.23% (2/62) 4.75 0.002556 0.046752
GO:0060255 regulation of macromolecule metabolic process 30.65% (19/62) 0.96 0.002545 0.047184
GO:0043170 macromolecule metabolic process 38.71% (24/62) 0.79 0.002702 0.04877
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_268 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_34 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_51 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_87 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_106 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_115 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_131 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_136 0.017 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_197 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_212 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_217 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_229 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (62) (download table)

InterPro Domains

GO Terms

Family Terms